Published in Nucleic Acids Res on April 22, 2005
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Functional characterization of core promoter elements: the downstream core element is recognized by TAF1. Mol Cell Biol (2005) 1.46
Context-dependent DNA recognition code for C2H2 zinc-finger transcription factors. Bioinformatics (2008) 1.42
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Quantitative analysis of EGR proteins binding to DNA: assessing additivity in both the binding site and the protein. BMC Bioinformatics (2005) 1.31
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The features of Drosophila core promoters revealed by statistical analysis. BMC Genomics (2006) 1.26
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Making connections between novel transcription factors and their DNA motifs. Genome Res (2005) 1.16
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Novel transcription regulatory elements in Caenorhabditis elegans muscle genes. Genome Res (2004) 1.13
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Recognition models to predict DNA-binding specificities of homeodomain proteins. Bioinformatics (2012) 1.09
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An improved predictive recognition model for Cys(2)-His(2) zinc finger proteins. Nucleic Acids Res (2014) 1.02
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The cis-regulatory map of Shewanella genomes. Nucleic Acids Res (2008) 0.96
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Using defined finger-finger interfaces as units of assembly for constructing zinc-finger nucleases. Nucleic Acids Res (2013) 0.91
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Improving gene-finding in Chlamydomonas reinhardtii:GreenGenie2. BMC Genomics (2009) 0.88
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Discovering cis-regulatory RNAs in Shewanella genomes by Support Vector Machines. PLoS Comput Biol (2009) 0.88
Procom: a web-based tool to compare multiple eukaryotic proteomes. Bioinformatics (2004) 0.87
Genome wide screens in yeast to identify potential binding sites and target genes of DNA-binding proteins. Nucleic Acids Res (2007) 0.87
Putting the Leishmania genome to work: functional genomics by transposon trapping and expression profiling. Philos Trans R Soc Lond B Biol Sci (2002) 0.87
Exploring the DNA-recognition potential of homeodomains. Genome Res (2012) 0.83
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Promoter classifier: software package for promoter database analysis. Appl Bioinformatics (2005) 0.81
Discriminative motif optimization based on perceptron training. Bioinformatics (2013) 0.81
Conserved Motifs and Prediction of Regulatory Modules in Caenorhabditis elegans. G3 (Bethesda) (2012) 0.81
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Fast, sensitive discovery of conserved genome-wide motifs. J Comput Biol (2012) 0.78
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Optimized position weight matrices in prediction of novel putative binding sites for transcription factors in the Drosophila melanogaster genome. PLoS One (2013) 0.75
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