Published in J Eukaryot Microbiol on June 01, 2005
Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum. Genome Biol (2011) 1.72
Eumycetozoa = Amoebozoa?: SSUrDNA phylogeny of protosteloid slime molds and its significance for the amoebozoan supergroup. PLoS One (2009) 1.38
The chastity of amoebae: re-evaluating evidence for sex in amoeboid organisms. Proc Biol Sci (2011) 1.05
Comprehensive phylogenetic reconstruction of amoebozoa based on concatenated analyses of SSU-rDNA and actin genes. PLoS One (2011) 0.99
Genetic structure of two protist species (Myxogastria, Amoebozoa) suggests asexual reproduction in sexual Amoebae. PLoS One (2011) 0.86
The Amoebozoa. Methods Mol Biol (2013) 0.85
Polyphyletic origin of the genus Physarum (Physarales, Myxomycetes) revealed by nuclear rDNA mini-chromosome analysis and group I intron synapomorphy. BMC Evol Biol (2012) 0.79
RNA editing of 10 Didymium iridis mitochondrial genes and comparison with the homologous genes in Physarum polycephalum. RNA (2010) 0.79
Primal eukaryogenesis: on the communal nature of precellular States, ancestral to modern life. Life (Basel) (2012) 0.78
Two-gene phylogeny of bright-spored Myxomycetes (slime moulds, superorder Lucisporidia). PLoS One (2013) 0.77
Identification of Diachea leucopodia on Strawberry from Greenhouse in Korea. Mycobiology (2008) 0.75
Speciation in progress? A phylogeographic study among populations of Hemitrichia serpula (Myxomycetes). PLoS One (2017) 0.75
First insights into the biodiversity and biogeography of the Southern Ocean deep sea. Nature (2007) 4.98
Comparative genomic analysis of three Leishmania species that cause diverse human disease. Nat Genet (2007) 4.58
The revised classification of eukaryotes. J Eukaryot Microbiol (2012) 3.48
Phylogenomics reshuffles the eukaryotic supergroups. PLoS One (2007) 2.67
Extensive fungal diversity in plant roots. Science (2002) 2.65
The protistan origins of animals and fungi. Mol Biol Evol (2005) 2.61
Molecular phylogeny and evolution of morphology in the social amoebas. Science (2006) 2.53
Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes. Biol Lett (2008) 2.30
The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy. Nucleic Acids Res (2012) 1.93
Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, telonemia and centroheliozoa, are related to photosynthetic chromalveolates. Genome Biol Evol (2009) 1.89
How many novel eukaryotic 'kingdoms'? Pitfalls and limitations of environmental DNA surveys. BMC Biol (2004) 1.89
CBOL protist working group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms. PLoS Biol (2012) 1.84
Molecular phylogeny, evolutionary rates, and divergence timing of the symbiotic dinoflagellate genus Symbiodinium. Mol Phylogenet Evol (2005) 1.82
The origins of species richness in the Hymenoptera: insights from a family-level supertree. BMC Evol Biol (2010) 1.79
The response of avian feeding guilds to tropical forest disturbance. Conserv Biol (2007) 1.73
Plant expansins are a complex multigene family with an ancient evolutionary origin. Plant Physiol (2002) 1.72
The twilight of Heliozoa and rise of Rhizaria, an emerging supergroup of amoeboid eukaryotes. Proc Natl Acad Sci U S A (2004) 1.57
Evolutionary origin of cAMP-based chemoattraction in the social amoebae. Proc Natl Acad Sci U S A (2005) 1.56
A molecular time-scale for eukaryote evolution recalibrated with the continuous microfossil record. Proc Biol Sci (2006) 1.53
Evolution of nonstop, no-go and nonsense-mediated mRNA decay and their termination factor-derived components. BMC Evol Biol (2008) 1.49
The evolution of early Foraminifera. Proc Natl Acad Sci U S A (2003) 1.46
Phylogenomics of the intracellular parasite Mikrocytos mackini reveals evidence for a mitosome in rhizaria. Curr Biol (2013) 1.42
Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists. BMC Evol Biol (2010) 1.39
Many hexapod groups originated earlier and withstood extinction events better than previously realized: inferences from supertrees. Proc Biol Sci (2010) 1.36
Phylogeny of novel naked Filose and Reticulose Cercozoa: Granofilosea cl. n. and Proteomyxidea revised. Protist (2008) 1.36
Ultra-deep sequencing of foraminiferal microbarcodes unveils hidden richness of early monothalamous lineages in deep-sea sediments. Proc Natl Acad Sci U S A (2011) 1.34
Freshwater Perkinsea and marine-freshwater colonizations revealed by pyrosequencing and phylogeny of environmental rDNA. ISME J (2010) 1.31
Phylogenetic analysis and real time PCR detection of a presumbably undescribed Peronospora species on sweet basil and sage. Mycol Res (2005) 1.21
Potential of DNA sequences to identify zoanthids (Cnidaria: Zoantharia). Zoolog Sci (2008) 1.20
Deep phylogeny and evolution of slime moulds (mycetozoa). Protist (2009) 1.16
The testate lobose amoebae (order Arcellinida Kent, 1880) finally find their home within Amoebozoa. Protist (2005) 1.14
Monophyly of Rhizaria and multigene phylogeny of unicellular bikonts. Mol Biol Evol (2006) 1.12
A novel polyubiquitin structure in Cercozoa and Foraminifera: evidence for a new eukaryotic supergroup. Mol Biol Evol (2003) 1.10
A new genus, Helgoeca gen. nov., for a nudiform choanoflagellate. Eur J Protistol (2008) 1.09
Ancient DNA complements microfossil record in deep-sea subsurface sediments. Biol Lett (2013) 1.05
Evolution of dark-spored Myxomycetes (slime-molds): molecules versus morphology. Mol Phylogenet Evol (2008) 1.03
Phylogeny of lobose amoebae based on actin and small-subunit ribosomal RNA genes. Mol Biol Evol (2003) 1.03
Phylogenetic position of Gromia oviformis Dujardin inferred from nuclear-encoded small subunit ribosomal DNA. Protist (2002) 1.01
Small-subunit ribosomal RNA gene sequences of Phaeodarea challenge the monophyly of Haeckel's Radiolaria. Protist (2004) 1.00
Molecular phylogeny and classification of the lobose amoebae. Protist (2005) 1.00
Molecular identification of sequestered diatom chloroplasts and kleptoplastidy in foraminifera. Protist (2010) 0.99
Phylogenetic position of Multicilia marina and the evolution of Amoebozoa. Int J Syst Evol Microbiol (2006) 0.98
Diversification of unicellular eukaryotes: cryptomonad colonizations of marine and fresh waters inferred from revised 18S rRNA phylogeny. Environ Microbiol (2008) 0.98
Revised small subunit rRNA analysis provides further evidence that Foraminifera are related to Cercozoa. J Mol Evol (2003) 0.96
Cultivation-independent analysis reveals a shift in ciliate 18S rRNA gene diversity in a polycyclic aromatic hydrocarbon-polluted soil. FEMS Microbiol Ecol (2007) 0.95
Foraminifera and Cercozoa share a common origin according to RNA polymerase II phylogenies. Int J Syst Evol Microbiol (2003) 0.95
Evolution of elongation factor G and the origins of mitochondrial and chloroplast forms. Mol Biol Evol (2010) 0.93
Polyubiquitin insertions and the phylogeny of Cercozoa and Rhizaria. Protist (2005) 0.93
Freshwater foraminiferans revealed by analysis of environmental DNA samples. J Eukaryot Microbiol (2003) 0.92
Lateral transfer of an EF-1alpha gene: origin and evolution of the large subunit of ATP sulfurylase in eubacteria. Curr Biol (2002) 0.92
Intra-genomic ribosomal RNA polymorphism and morphological variation in Elphidium macellum suggests inter-specific hybridization in foraminifera. PLoS One (2012) 0.90
Higher-level phylogeny of Foraminifera inferred from the RNA polymerase II (RPB1) gene. Eur J Protistol (2007) 0.89
Transcriptome analysis of foraminiferan Elphidium margaritaceum questions the role of gene transfer in kleptoplastidy. Mol Biol Evol (2012) 0.89
Can abundance of protists be inferred from sequence data: a case study of foraminifera. PLoS One (2013) 0.88
Barcoding amoebae: comparison of SSU, ITS and COI genes as tools for molecular identification of naked lobose amoebae. Protist (2009) 0.88
An expanded phylogeny of social amoebas (Dictyostelia) shows increasing diversity and new morphological patterns. BMC Evol Biol (2011) 0.87
Bayesian relaxed clock estimation of divergence times in foraminifera. Mol Phylogenet Evol (2011) 0.86
Deep relationships of Rhizaria revealed by phylogenomics: a farewell to Haeckel's Radiolaria. Mol Phylogenet Evol (2012) 0.85
Molecular evidence for widespread occurrence of Foraminifera in soils. Environ Microbiol (2010) 0.85
Analysis of expressed sequence tags from a naked foraminiferan Reticulomyxa filosa. Genome (2006) 0.85
Comparing potential COI and SSU rDNA barcodes for assessing the diversity and phylogenetic relationships of cyphoderiid testate amoebae (Rhizaria: Euglyphida). Protist (2010) 0.85
Diverse molecular signatures for ribosomally 'active' Perkinsea in marine sediments. BMC Microbiol (2014) 0.84
Molecular phylogeny of euglyphid testate amoebae (Cercozoa: Euglyphida) suggests transitions between marine supralittoral and freshwater/terrestrial environments are infrequent. Mol Phylogenet Evol (2009) 0.84
SeqFIRE: a web application for automated extraction of indel regions and conserved blocks from protein multiple sequence alignments. Nucleic Acids Res (2012) 0.84
Tempo and mode of spliceosomal intron evolution in actin of foraminifera. J Mol Evol (2006) 0.83
Molecular evidence for host-symbiont specificity in soritid foraminifera. Protist (2005) 0.83
The novel marine gliding zooflagellate genus Mantamonas (Mantamonadida ord. n.: Apusozoa). Protist (2010) 0.82
Unexpected foraminiferal diversity revealed by small-subunit rDNA analysis of Antarctic sediment. J Eukaryot Microbiol (2004) 0.82
A fully resolved phylogeny of the social amoebas (Dictyostelia) based on combined SSU and ITS rDNA sequences. Protist (2010) 0.82
Structure, expression and function of Allomyces arbuscula CDP II (metacaspase) gene. Gene (2010) 0.81
Three families of LTR retrotransposons are present in the genome of the choanoflagellate Monosiga brevicollis. Protist (2008) 0.81
Squamamoeba japonica n. g. n. sp. (Amoebozoa): a deep-sea amoeba from the Sea of Japan with a novel cell coat structure. Protist (2012) 0.81
Reticulamoeba is a long-branched Granofilosean (Cercozoa) that is missing from sequence databases. PLoS One (2012) 0.81
Conserved meiotic genes point to sex in the choanoflagellates. J Eukaryot Microbiol (2009) 0.81
Evolution and diversity of dictyostelid social amoebae. Protist (2011) 0.80
Semimorula liquescens is a modified echinostelid myxomycete (Mycetozoa). Mycologia (2009) 0.80
A marine dinoflagellate, Amphidinium eilatiensis n. sp., from the benthos of a mariculture sedimentation pond in Eilat, Israel. J Eukaryot Microbiol (2004) 0.78
New species of dictyostelids from Patagonia and Tierra del Fuego, Argentina. Mycologia (2010) 0.78
Molecular evidence for Lessepsian invasion of soritids (larger symbiont bearing benthic foraminifera). PLoS One (2013) 0.78
Evolution of protein indels in plants, animals and fungi. BMC Evol Biol (2013) 0.78
Ovalopodium desertum n. sp. and the phylogenetic relationships of Cochliopodiidae (Amoebozoa). Protist (2011) 0.78
Molecular evidence for β-tubulin neofunctionalization in Retaria (Foraminifera and radiolarians). Mol Biol Evol (2013) 0.78
Description and phylogenetic relationships of Spumochlamys perforata n. sp. and Spumochlamys bryora n. sp. (Amoebozoa, Arcellinida). J Eukaryot Microbiol (2009) 0.77
Dependence of interfacial film organization on lipid molecular structure. Langmuir (2014) 0.75
Molecular phylogenetic analysis places Percolomonas cosmopolitus within Heterolobosea: evolutionary implications. J Eukaryot Microbiol (2004) 0.75
Molecular Phylogeny and Morphology of Leannia veloxifera n. gen. et sp. Unveils a New Lineage of Monothalamous Foraminifera. J Eukaryot Microbiol (2014) 0.75
Rhizamoeba neglecta n. sp. (Amoebozoa, Tubulinea) from the bottom sediments of freshwater Lake Leshevoe (Valamo Island, North-Western Russia), with notes on the phylogeny of the order Leptomyxida. Eur J Protistol (2009) 0.75
Arnoldiellina fluorescens gen. et sp. nov.--a new green autofluorescent foraminifer from the Gulf of Eilat (Israel). Eur J Protistol (2012) 0.75