Published in Protist on August 01, 2005
Evaluating support for the current classification of eukaryotic diversity. PLoS Genet (2006) 1.55
A molecular time-scale for eukaryote evolution recalibrated with the continuous microfossil record. Proc Biol Sci (2006) 1.53
What determines cell size? BMC Biol (2012) 1.38
The eukaryotic tree of life from a global phylogenomic perspective. Cold Spring Harb Perspect Biol (2014) 1.20
Epidemiology and Ecology of Opportunistic Premise Plumbing Pathogens: Legionella pneumophila, Mycobacterium avium, and Pseudomonas aeruginosa. Environ Health Perspect (2015) 1.14
The others: our biased perspective of eukaryotic genomes. Trends Ecol Evol (2014) 1.08
Comprehensive phylogenetic reconstruction of amoebozoa based on concatenated analyses of SSU-rDNA and actin genes. PLoS One (2011) 0.99
Metatranscriptomic census of active protists in soils. ISME J (2015) 0.92
Building a phylogenomic pipeline for the eukaryotic tree of life - addressing deep phylogenies with genome-scale data. PLoS Curr (2014) 0.88
Evolution of the actin gene family in testate lobose amoebae (Arcellinida) is characterized by two distinct clades of paralogs and recent independent expansions. Mol Biol Evol (2010) 0.86
The Amoebozoa. Methods Mol Biol (2013) 0.85
Did terrestrial diversification of amoebas (amoebozoa) occur in synchrony with land plants? PLoS One (2013) 0.82
Thecamoebians (Testate Amoebae) Straddling the Permian-Triassic Boundary in the Guryul Ravine Section, India: Evolutionary and Palaeoecological Implications. PLoS One (2015) 0.75
Cytoskeletal architecture and its evolutionary significance in amoeboid eukaryotes and their mode of locomotion. R Soc Open Sci (2016) 0.75
First insights into the biodiversity and biogeography of the Southern Ocean deep sea. Nature (2007) 4.98
The revised classification of eukaryotes. J Eukaryot Microbiol (2012) 3.48
Phylogenomics reshuffles the eukaryotic supergroups. PLoS One (2007) 2.67
Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes. Biol Lett (2008) 2.30
The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy. Nucleic Acids Res (2012) 1.93
Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, telonemia and centroheliozoa, are related to photosynthetic chromalveolates. Genome Biol Evol (2009) 1.89
How many novel eukaryotic 'kingdoms'? Pitfalls and limitations of environmental DNA surveys. BMC Biol (2004) 1.89
CBOL protist working group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms. PLoS Biol (2012) 1.84
Molecular phylogeny, evolutionary rates, and divergence timing of the symbiotic dinoflagellate genus Symbiodinium. Mol Phylogenet Evol (2005) 1.82
Noma: an "infectious" disease of unknown aetiology. Lancet Infect Dis (2003) 1.70
The twilight of Heliozoa and rise of Rhizaria, an emerging supergroup of amoeboid eukaryotes. Proc Natl Acad Sci U S A (2004) 1.57
A molecular time-scale for eukaryote evolution recalibrated with the continuous microfossil record. Proc Biol Sci (2006) 1.53
The evolution of early Foraminifera. Proc Natl Acad Sci U S A (2003) 1.46
Phylogenomics of the intracellular parasite Mikrocytos mackini reveals evidence for a mitosome in rhizaria. Curr Biol (2013) 1.42
Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists. BMC Evol Biol (2010) 1.39
Phylogeny of novel naked Filose and Reticulose Cercozoa: Granofilosea cl. n. and Proteomyxidea revised. Protist (2008) 1.36
Ultra-deep sequencing of foraminiferal microbarcodes unveils hidden richness of early monothalamous lineages in deep-sea sediments. Proc Natl Acad Sci U S A (2011) 1.34
Freshwater Perkinsea and marine-freshwater colonizations revealed by pyrosequencing and phylogeny of environmental rDNA. ISME J (2010) 1.31
Phylogenetic analysis and real time PCR detection of a presumbably undescribed Peronospora species on sweet basil and sage. Mycol Res (2005) 1.21
Potential of DNA sequences to identify zoanthids (Cnidaria: Zoantharia). Zoolog Sci (2008) 1.20
Deep phylogeny and evolution of slime moulds (mycetozoa). Protist (2009) 1.16
higher-order phylogeny of plasmodial slime molds (Myxogastria) based on elongation factor 1-A and small subunit rRNA gene sequences. J Eukaryot Microbiol (2005) 1.15
Novel microarray design strategy to study complex bacterial communities. Appl Environ Microbiol (2008) 1.14
The testate lobose amoebae (order Arcellinida Kent, 1880) finally find their home within Amoebozoa. Protist (2005) 1.14
Monophyly of Rhizaria and multigene phylogeny of unicellular bikonts. Mol Biol Evol (2006) 1.12
A novel polyubiquitin structure in Cercozoa and Foraminifera: evidence for a new eukaryotic supergroup. Mol Biol Evol (2003) 1.10
Ancient DNA complements microfossil record in deep-sea subsurface sediments. Biol Lett (2013) 1.05
Phylogeny of lobose amoebae based on actin and small-subunit ribosomal RNA genes. Mol Biol Evol (2003) 1.03
Evolution of dark-spored Myxomycetes (slime-molds): molecules versus morphology. Mol Phylogenet Evol (2008) 1.03
Phylogenetic position of Gromia oviformis Dujardin inferred from nuclear-encoded small subunit ribosomal DNA. Protist (2002) 1.01
Small-subunit ribosomal RNA gene sequences of Phaeodarea challenge the monophyly of Haeckel's Radiolaria. Protist (2004) 1.00
Molecular identification of sequestered diatom chloroplasts and kleptoplastidy in foraminifera. Protist (2010) 0.99
Diversification of unicellular eukaryotes: cryptomonad colonizations of marine and fresh waters inferred from revised 18S rRNA phylogeny. Environ Microbiol (2008) 0.98
Phylogenetic position of Multicilia marina and the evolution of Amoebozoa. Int J Syst Evol Microbiol (2006) 0.98
Revised small subunit rRNA analysis provides further evidence that Foraminifera are related to Cercozoa. J Mol Evol (2003) 0.96
Cultivation-independent analysis reveals a shift in ciliate 18S rRNA gene diversity in a polycyclic aromatic hydrocarbon-polluted soil. FEMS Microbiol Ecol (2007) 0.95
Foraminifera and Cercozoa share a common origin according to RNA polymerase II phylogenies. Int J Syst Evol Microbiol (2003) 0.95
Polyubiquitin insertions and the phylogeny of Cercozoa and Rhizaria. Protist (2005) 0.93
Freshwater foraminiferans revealed by analysis of environmental DNA samples. J Eukaryot Microbiol (2003) 0.92
Intra-genomic ribosomal RNA polymorphism and morphological variation in Elphidium macellum suggests inter-specific hybridization in foraminifera. PLoS One (2012) 0.90
Higher-level phylogeny of Foraminifera inferred from the RNA polymerase II (RPB1) gene. Eur J Protistol (2007) 0.89
Transcriptome analysis of foraminiferan Elphidium margaritaceum questions the role of gene transfer in kleptoplastidy. Mol Biol Evol (2012) 0.89
Barcoding amoebae: comparison of SSU, ITS and COI genes as tools for molecular identification of naked lobose amoebae. Protist (2009) 0.88
Can abundance of protists be inferred from sequence data: a case study of foraminifera. PLoS One (2013) 0.88
Bayesian relaxed clock estimation of divergence times in foraminifera. Mol Phylogenet Evol (2011) 0.86
Molecular evidence for widespread occurrence of Foraminifera in soils. Environ Microbiol (2010) 0.85
Deep relationships of Rhizaria revealed by phylogenomics: a farewell to Haeckel's Radiolaria. Mol Phylogenet Evol (2012) 0.85
Analysis of expressed sequence tags from a naked foraminiferan Reticulomyxa filosa. Genome (2006) 0.85
Comparing potential COI and SSU rDNA barcodes for assessing the diversity and phylogenetic relationships of cyphoderiid testate amoebae (Rhizaria: Euglyphida). Protist (2010) 0.85
Diverse molecular signatures for ribosomally 'active' Perkinsea in marine sediments. BMC Microbiol (2014) 0.84
Molecular phylogeny of euglyphid testate amoebae (Cercozoa: Euglyphida) suggests transitions between marine supralittoral and freshwater/terrestrial environments are infrequent. Mol Phylogenet Evol (2009) 0.84
Tempo and mode of spliceosomal intron evolution in actin of foraminifera. J Mol Evol (2006) 0.83
Molecular evidence for host-symbiont specificity in soritid foraminifera. Protist (2005) 0.83
Microarray analysis of microbiota of gingival lesions in noma patients. PLoS Negl Trop Dis (2013) 0.82
Unexpected foraminiferal diversity revealed by small-subunit rDNA analysis of Antarctic sediment. J Eukaryot Microbiol (2004) 0.82
The novel marine gliding zooflagellate genus Mantamonas (Mantamonadida ord. n.: Apusozoa). Protist (2010) 0.82
Structure, expression and function of Allomyces arbuscula CDP II (metacaspase) gene. Gene (2010) 0.81
Squamamoeba japonica n. g. n. sp. (Amoebozoa): a deep-sea amoeba from the Sea of Japan with a novel cell coat structure. Protist (2012) 0.81
Reticulamoeba is a long-branched Granofilosean (Cercozoa) that is missing from sequence databases. PLoS One (2012) 0.81
Semimorula liquescens is a modified echinostelid myxomycete (Mycetozoa). Mycologia (2009) 0.80
Streptococcus sinensis endocarditis outside Hong Kong. Emerg Infect Dis (2007) 0.80
Ovalopodium desertum n. sp. and the phylogenetic relationships of Cochliopodiidae (Amoebozoa). Protist (2011) 0.78
Molecular evidence for β-tubulin neofunctionalization in Retaria (Foraminifera and radiolarians). Mol Biol Evol (2013) 0.78
A marine dinoflagellate, Amphidinium eilatiensis n. sp., from the benthos of a mariculture sedimentation pond in Eilat, Israel. J Eukaryot Microbiol (2004) 0.78
Molecular evidence for Lessepsian invasion of soritids (larger symbiont bearing benthic foraminifera). PLoS One (2013) 0.78
Description and phylogenetic relationships of Spumochlamys perforata n. sp. and Spumochlamys bryora n. sp. (Amoebozoa, Arcellinida). J Eukaryot Microbiol (2009) 0.77
Evidence for graft colonization with periodontal pathogens in lung transplant recipients. A pilot study. Schweiz Monatsschr Zahnmed (2011) 0.76
Arnoldiellina fluorescens gen. et sp. nov.--a new green autofluorescent foraminifer from the Gulf of Eilat (Israel). Eur J Protistol (2012) 0.75
Dependence of interfacial film organization on lipid molecular structure. Langmuir (2014) 0.75
Molecular phylogenetic analysis places Percolomonas cosmopolitus within Heterolobosea: evolutionary implications. J Eukaryot Microbiol (2004) 0.75
Rhizamoeba neglecta n. sp. (Amoebozoa, Tubulinea) from the bottom sediments of freshwater Lake Leshevoe (Valamo Island, North-Western Russia), with notes on the phylogeny of the order Leptomyxida. Eur J Protistol (2009) 0.75
Molecular Phylogeny and Morphology of Leannia veloxifera n. gen. et sp. Unveils a New Lineage of Monothalamous Foraminifera. J Eukaryot Microbiol (2014) 0.75
Morphological, ecological and molecular studies of Vannella simplex Wohlfarth-Bottermann 1960 (Lobosea, Gymnamoebia), with a new diagnosis of this species. Protist (2002) 0.75