Published in Development on June 01, 2005
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol (2010) 75.21
Control of developmental regulators by Polycomb in human embryonic stem cells. Cell (2006) 28.21
Master transcription factors and mediator establish super-enhancers at key cell identity genes. Cell (2013) 9.55
Myogenic factors that regulate expression of muscle-specific microRNAs. Proc Natl Acad Sci U S A (2006) 6.19
Genome-wide MyoD binding in skeletal muscle cells: a potential for broad cellular reprogramming. Dev Cell (2010) 4.50
Genome-wide computational prediction of transcriptional regulatory modules reveals new insights into human gene expression. Genome Res (2006) 4.32
The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells. Nat Biotechnol (2014) 4.06
Master transcription factors determine cell-type-specific responses to TGF-β signaling. Cell (2011) 3.94
Interlocking transcriptional feedback loops control white-opaque switching in Candida albicans. PLoS Biol (2007) 3.27
MyoD inhibits Fstl1 and Utrn expression by inducing transcription of miR-206. J Cell Biol (2006) 2.85
MyoD targets TAF3/TRF3 to activate myogenin transcription. Mol Cell (2008) 2.78
Direct lineage conversions: unnatural but useful? Nat Biotechnol (2011) 2.69
Klf4 cooperates with Oct3/4 and Sox2 to activate the Lefty1 core promoter in embryonic stem cells. Mol Cell Biol (2006) 2.59
The IKK complex contributes to the induction of autophagy. EMBO J (2009) 2.41
Target hub proteins serve as master regulators of development in yeast. Genes Dev (2006) 2.39
Defining the transcriptional redundancy of early bodywall muscle development in C. elegans: evidence for a unified theory of animal muscle development. Genes Dev (2006) 2.33
MicroRNAs 1, 133, and 206: critical factors of skeletal and cardiac muscle development, function, and disease. Int J Biochem Cell Biol (2009) 2.30
Sox9 directs hypertrophic maturation and blocks osteoblast differentiation of growth plate chondrocytes. Dev Cell (2012) 2.28
Genetic analysis of p38 MAP kinases in myogenesis: fundamental role of p38alpha in abrogating myoblast proliferation. EMBO J (2007) 2.21
eRNAs promote transcription by establishing chromatin accessibility at defined genomic loci. Mol Cell (2013) 2.12
Can cancer be reversed by engineering the tumor microenvironment? Semin Cancer Biol (2008) 2.07
Genome-wide transcription factor binding: beyond direct target regulation. Trends Genet (2011) 1.97
Neurogenin and NeuroD direct transcriptional targets and their regulatory enhancers. EMBO J (2007) 1.93
Regulation of skeletal muscle sarcomere integrity and postnatal muscle function by Mef2c. Mol Cell Biol (2007) 1.79
The protein arginine methyltransferase Prmt5 is required for myogenesis because it facilitates ATP-dependent chromatin remodeling. Mol Cell Biol (2006) 1.78
Mitotic bookmarking of genes: a novel dimension to epigenetic control. Nat Rev Genet (2010) 1.76
Molecular roadblocks for cellular reprogramming. Mol Cell (2012) 1.74
Functional interdependence at the chromatin level between the MKK6/p38 and IGF1/PI3K/AKT pathways during muscle differentiation. Mol Cell (2007) 1.70
Caspase 3/caspase-activated DNase promote cell differentiation by inducing DNA strand breaks. Proc Natl Acad Sci U S A (2010) 1.65
CLOCK and BMAL1 regulate MyoD and are necessary for maintenance of skeletal muscle phenotype and function. Proc Natl Acad Sci U S A (2010) 1.63
A subcortical maternal complex essential for preimplantation mouse embryogenesis. Dev Cell (2008) 1.62
Signal-dependent incorporation of MyoD-BAF60c into Brg1-based SWI/SNF chromatin-remodelling complex. EMBO J (2011) 1.55
Enhanced myofibroblastic differentiation and survival in Thy-1(-) lung fibroblasts. Am J Respir Cell Mol Biol (2006) 1.54
Codependent activators direct myoblast-specific MyoD transcription. Dev Cell (2008) 1.52
Radical acceleration of nuclear reprogramming by chromatin remodeling with the transactivation domain of MyoD. Stem Cells (2011) 1.46
Dynamics of the skeletal muscle secretome during myoblast differentiation. Mol Cell Proteomics (2010) 1.44
Transcriptional pathways in second heart field development. Semin Cell Dev Biol (2007) 1.43
A Cdo-Bnip-2-Cdc42 signaling pathway regulates p38alpha/beta MAPK activity and myogenic differentiation. J Cell Biol (2008) 1.39
Mef2s are required for thick filament formation in nascent muscle fibres. Development (2007) 1.37
Cooperation between myogenic regulatory factors and SIX family transcription factors is important for myoblast differentiation. Nucleic Acids Res (2010) 1.36
MicroRNA-378 targets the myogenic repressor MyoR during myoblast differentiation. J Biol Chem (2011) 1.36
Myocardin is a bifunctional switch for smooth versus skeletal muscle differentiation. Proc Natl Acad Sci U S A (2007) 1.35
Lysine methyltransferase G9a methylates the transcription factor MyoD and regulates skeletal muscle differentiation. Proc Natl Acad Sci U S A (2012) 1.33
Interleukin-6 myokine signaling in skeletal muscle: a double-edged sword? FEBS J (2013) 1.33
Transcriptional autoregulation controls pancreatic Ptf1a expression during development and adulthood. Mol Cell Biol (2008) 1.31
p38-{gamma}-dependent gene silencing restricts entry into the myogenic differentiation program. J Cell Biol (2009) 1.29
Defining the transcriptional signature of skeletal muscle stem cells. J Anim Sci (2007) 1.28
Distinct protein arginine methyltransferases promote ATP-dependent chromatin remodeling function at different stages of skeletal muscle differentiation. Mol Cell Biol (2009) 1.26
Expression of miR-1, miR-133a, miR-133b and miR-206 increases during development of human skeletal muscle. BMC Dev Biol (2011) 1.24
Regulation of gene expression in osteoblasts. Biofactors (2010) 1.23
JAK1-STAT1-STAT3, a key pathway promoting proliferation and preventing premature differentiation of myoblasts. J Cell Biol (2007) 1.22
Restricted expression of cdc25a in the tailbud is essential for formation of the zebrafish posterior body. Genes Dev (2014) 1.18
Regulating a master regulator: establishing tissue-specific gene expression in skeletal muscle. Epigenetics (2010) 1.17
JAK2/STAT2/STAT3 are required for myogenic differentiation. J Biol Chem (2008) 1.17
miR-155 inhibits expression of the MEF2A protein to repress skeletal muscle differentiation. J Biol Chem (2011) 1.13
The histone methyltransferase Set7/9 promotes myoblast differentiation and myofibril assembly. J Cell Biol (2011) 1.13
Retinoic acid enhances skeletal muscle progenitor formation and bypasses inhibition by bone morphogenetic protein 4 but not dominant negative beta-catenin. BMC Biol (2009) 1.13
Chd2 interacts with H3.3 to determine myogenic cell fate. EMBO J (2012) 1.12
Activation of Cdc6 by MyoD is associated with the expansion of quiescent myogenic satellite cells. J Cell Biol (2010) 1.12
Dynamic chromatin organization during foregut development mediated by the organ selector gene PHA-4/FoxA. PLoS Genet (2010) 1.12
Transcriptional regulation of neuronal phenotype in mammals. J Physiol (2006) 1.12
MASTR directs MyoD-dependent satellite cell differentiation during skeletal muscle regeneration. Genes Dev (2012) 1.10
Regulation of myoblast motility and fusion by the CXCR4-associated sialomucin, CD164. J Biol Chem (2008) 1.10
Muscle satellite cell heterogeneity and self-renewal. Front Cell Dev Biol (2014) 1.09
Structure and functions of powerful transactivators: VP16, MyoD and FoxA. Int J Dev Biol (2010) 1.09
Involvement of the p38 mitogen-activated protein kinase alpha, beta, and gamma isoforms in myogenic differentiation. Mol Biol Cell (2008) 1.08
PHA-4/FoxA cooperates with TAM-1/TRIM to regulate cell fate restriction in the C. elegans foregut. Dev Biol (2006) 1.07
N-cadherin ligation, but not Sonic hedgehog binding, initiates Cdo-dependent p38alpha/beta MAPK signaling in skeletal myoblasts. Proc Natl Acad Sci U S A (2010) 1.07
Chromatin regulated interchange between polycomb repressive complex 2 (PRC2)-Ezh2 and PRC2-Ezh1 complexes controls myogenin activation in skeletal muscle cells. Epigenetics Chromatin (2011) 1.07
DA-Raf1, a competent intrinsic dominant-negative antagonist of the Ras-ERK pathway, is required for myogenic differentiation. J Cell Biol (2007) 1.06
MyoD gene suppression by Oct4 is required for reprogramming in myoblasts to produce induced pluripotent stem cells. Stem Cells (2011) 1.04
Cdo binds Abl to promote p38alpha/beta mitogen-activated protein kinase activity and myogenic differentiation. Mol Cell Biol (2009) 1.03
Novel approach to meta-analysis of microarray datasets reveals muscle remodeling-related drug targets and biomarkers in Duchenne muscular dystrophy. PLoS Comput Biol (2012) 1.02
Myogenic Akt signaling upregulates the utrophin-glycoprotein complex and promotes sarcolemma stability in muscular dystrophy. Hum Mol Genet (2008) 1.02
BAF60 A, B, and Cs of muscle determination and renewal. Genes Dev (2012) 1.01
Skeletal muscle programming and re-programming. Curr Opin Genet Dev (2013) 1.00
Glucocorticoid-induced leucine zipper (GILZ) and long GILZ inhibit myogenic differentiation and mediate anti-myogenic effects of glucocorticoids. J Biol Chem (2010) 1.00
Cardiotrophin-1 maintains the undifferentiated state in skeletal myoblasts. J Biol Chem (2009) 0.99
MicroRNA-214 promotes myogenic differentiation by facilitating exit from mitosis via down-regulation of proto-oncogene N-ras. J Biol Chem (2010) 0.99
OTX2 represses myogenic and neuronal differentiation in medulloblastoma cells. Cancer Res (2012) 0.98
Regenerative pharmacology in the treatment of genetic diseases: the paradigm of muscular dystrophy. Int J Biochem Cell Biol (2008) 0.98
SOCS1, SOCS3, and PIAS1 promote myogenic differentiation by inhibiting the leukemia inhibitory factor-induced JAK1/STAT1/STAT3 pathway. Mol Cell Biol (2009) 0.97
Long range interactions regulate Igf2 gene transcription during skeletal muscle differentiation. J Biol Chem (2010) 0.97
Age-associated disruption of molecular clock expression in skeletal muscle of the spontaneously hypertensive rat. PLoS One (2011) 0.96
Sequential association of myogenic regulatory factors and E proteins at muscle-specific genes. Skelet Muscle (2011) 0.95
Sculpting chromatin beyond the double helix: epigenetic control of skeletal myogenesis. Curr Top Dev Biol (2011) 0.95
Temporal anatomy of an epigenetic switch in cell programming: the white-opaque transition of C. albicans. Mol Microbiol (2010) 0.95
Caudal-like PAL-1 directly activates the bodywall muscle module regulator hlh-1 in C. elegans to initiate the embryonic muscle gene regulatory network. Development (2009) 0.95
PC4/Tis7/IFRD1 stimulates skeletal muscle regeneration and is involved in myoblast differentiation as a regulator of MyoD and NF-kappaB. J Biol Chem (2010) 0.94
NeuroD regulates proliferation of photoreceptor progenitors in the retina of the zebrafish. Mech Dev (2008) 0.94
Genetic and epigenomic footprints of folate. Prog Mol Biol Transl Sci (2012) 0.93
G9a mediates Sharp-1-dependent inhibition of skeletal muscle differentiation. Mol Biol Cell (2012) 0.93
Cdo interacts with APPL1 and activates Akt in myoblast differentiation. Mol Biol Cell (2010) 0.93
A KAP1 phosphorylation switch controls MyoD function during skeletal muscle differentiation. Genes Dev (2015) 0.92
A transcriptional enhancer from the coding region of ADAMTS5. PLoS One (2008) 0.92
Teashirt-3, a novel regulator of muscle differentiation, associates with BRG1-associated factor 57 (BAF57) to inhibit myogenin gene expression. J Biol Chem (2011) 0.92
The MADS box transcription factor MEF2C regulates melanocyte development and is a direct transcriptional target and partner of SOX10. Development (2011) 0.92
Comparative expression profiling identifies differential roles for Myogenin and p38α MAPK signaling in myogenesis. J Mol Cell Biol (2012) 0.91
Defining Akt actions in muscle differentiation. Am J Physiol Cell Physiol (2012) 0.91
Muscle development in Ciona intestinalis requires the b-HLH myogenic regulatory factor gene Ci-MRF. Dev Biol (2006) 0.91