Published in J Am Chem Soc on June 22, 2005
Crystal structure of hypothetical protein TTHB192 from Thermus thermophilus HB8 reveals a new protein family with an RNA recognition motif-like domain. Protein Sci (2006) 2.29
Inference of S-system models of genetic networks using a cooperative coevolutionary algorithm. Bioinformatics (2004) 1.96
Structural basis of the substrate-specific two-step catalysis of long chain fatty acyl-CoA synthetase dimer. J Biol Chem (2004) 1.89
An enzyme with a deep trefoil knot for the active-site architecture. Acta Crystallogr D Biol Crystallogr (2002) 1.72
Crystal structure of elongation factor P from Thermus thermophilus HB8. Proc Natl Acad Sci U S A (2004) 1.65
Genetic encoding of 3-iodo-L-tyrosine in Escherichia coli for single-wavelength anomalous dispersion phasing in protein crystallography. Structure (2009) 1.64
Structural basis for functional mimicry of long-variable-arm tRNA by transfer-messenger RNA. Proc Natl Acad Sci U S A (2007) 1.52
Vital role of moisture in the catalytic activity of supported gold nanoparticles. Angew Chem Int Ed Engl (2004) 1.51
Transcription profile of Thermus thermophilus CRISPR systems after phage infection. J Mol Biol (2009) 1.50
Rapid SNP diagnostics using asymmetric isothermal amplification and a new mismatch-suppression technology. Nat Methods (2007) 1.48
Structure of dNTP-inducible dNTP triphosphohydrolase: insight into broad specificity for dNTPs and triphosphohydrolase-type hydrolysis. Acta Crystallogr D Biol Crystallogr (2007) 1.29
Fluorescence resonance energy transfer analysis of protein translocase. SecYE from Thermus thermophilus HB8 forms a constitutive oligomer in membranes. J Biol Chem (2003) 1.28
Biochemical characterization of TT1383 from Thermus thermophilus identifies a novel dNTP triphosphohydrolase activity stimulated by dATP and dTTP. J Biochem (2004) 1.27
Crystal structure of the 2'-5' RNA ligase from Thermus thermophilus HB8. J Mol Biol (2003) 1.18
Transcription activation mediated by a cyclic AMP receptor protein from Thermus thermophilus HB8. J Bacteriol (2007) 1.17
Structural and functional characterization of the transcriptional repressor CsoR from Thermus thermophilus HB8. Microbiology (2010) 1.17
Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus. FEBS Lett (2003) 1.14
Purification, crystallization and initial crystallographic analysis of RNA polymerase holoenzyme from Thermus thermophilus. Acta Crystallogr D Biol Crystallogr (2002) 1.13
Structure and implications for the thermal stability of phosphopantetheine adenylyltransferase from Thermus thermophilus. Acta Crystallogr D Biol Crystallogr (2003) 1.12
Structure of RecJ exonuclease defines its specificity for single-stranded DNA. J Biol Chem (2010) 1.11
Structure-based functional identification of a novel heme-binding protein from Thermus thermophilus HB8. J Struct Funct Genomics (2005) 1.11
X-ray crystal structure of a CRISPR-associated protein, Cse2, from Thermus thermophilus HB8. Proteins (2008) 1.10
Identification and characterization of tRNA (Gm18) methyltransferase from Thermus thermophilus HB8: domain structure and conserved amino acid sequence motifs. Genes Cells (2002) 1.10
A novel induced-fit reaction mechanism of asymmetric hot dog thioesterase PAAI. J Mol Biol (2005) 1.10
Crystal structures of the signal transducing protein GlnK from Thermus thermophilus HB8. J Struct Biol (2005) 1.10
Crystal structure of the conserved protein TT1542 from Thermus thermophilus HB8. Protein Sci (2003) 1.09
Basis set and electron correlation effects on the polarizability and second hyperpolarizability of model open-shell pi-conjugated systems. J Chem Phys (2005) 1.08
Crystal structure of the conserved protein TTHA0727 from Thermus thermophilus HB8 at 1.9 A resolution: A CMD family member distinct from carboxymuconolactone decarboxylase (CMD) and AhpD. Protein Sci (2006) 1.08
Structural and sequence comparisons arising from the solution structure of the transcription elongation factor NusG from Thermus thermophilus. Proteins (2004) 1.06
Structural basis of D-DOPA oxidation by D-amino acid oxidase: alternative pathway for dopamine biosynthesis. Biochem Biophys Res Commun (2007) 1.04
Acetylome with structural mapping reveals the significance of lysine acetylation in Thermus thermophilus. J Proteome Res (2013) 1.02
X-ray crystal structure of a CRISPR-associated RAMP module [corrected] Cmr5 protein [corrected] from Thermus thermophilus HB8. Proteins (2009) 1.02
Crystal structure of the GTP-binding protein Obg from Thermus thermophilus HB8. J Mol Biol (2004) 1.01
Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal. J Biol Chem (2004) 1.01
Crystal structures of tyrosyl-tRNA synthetases from Archaea. J Mol Biol (2005) 1.00
Novel reaction mechanism of GTP cyclohydrolase I. High-resolution X-ray crystallography of Thermus thermophilus HB8 enzyme complexed with a transition state analogue, the 8-oxoguanine derivative. J Biochem (2005) 0.99
Catalytically highly active top gold atom on palladium nanocluster. Nat Mater (2011) 0.99
Global gene expression mediated by Thermus thermophilus SdrP, a CRP/FNR family transcriptional regulator. Mol Microbiol (2008) 0.99
Bound nucleotide controls the endonuclease activity of mismatch repair enzyme MutL. J Biol Chem (2008) 0.99
Crystal structure of 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis. J Biol Chem (2003) 0.98
Structural and mutational studies of the amino acid-editing domain from archaeal/eukaryal phenylalanyl-tRNA synthetase. Proc Natl Acad Sci U S A (2006) 0.98
TetR-family transcriptional repressor Thermus thermophilus FadR controls fatty acid degradation. Microbiology (2011) 0.97
Interaction analysis between tmRNA and SmpB from Thermus thermophilus. J Biochem (2005) 0.97
Molecular mechanisms of the whole DNA repair system: a comparison of bacterial and eukaryotic systems. J Nucleic Acids (2010) 0.96
Nuclease activity of the MutS homologue MutS2 from Thermus thermophilus is confined to the Smr domain. Nucleic Acids Res (2007) 0.96
Characterization of DNA polymerase X from Thermus thermophilus HB8 reveals the POLXc and PHP domains are both required for 3'-5' exonuclease activity. Nucleic Acids Res (2009) 0.96
Crystal structure of purine nucleoside phosphorylase from Thermus thermophilus. J Mol Biol (2004) 0.96
Second hyperpolarizability (gamma) of singlet diradical system: dependence of gamma on the diradical character. J Phys Chem A (2005) 0.95
Crystallographic and mutational studies of seryl-tRNA synthetase from the archaeon Pyrococcus horikoshii. RNA Biol (2008) 0.95
Theoretical study on second hyperpolarizabilities of phenylacetylene dendrimer: toward an understanding of structure-property relation in NLO responses of fractal antenna dendrimers. J Am Chem Soc (2002) 0.95
Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia. EMBO J (2005) 0.95
Role of RecJ-like protein with 5'-3' exonuclease activity in oligo(deoxy)nucleotide degradation. J Biol Chem (2010) 0.95
An O6-methylguanine-DNA methyltransferase-like protein from Thermus thermophilus interacts with a nucleotide excision repair protein. J Biochem (2008) 0.94
Degradation of ppGpp by nudix pyrophosphatase modulates the transition of growth phase in the bacterium Thermus thermophilus. J Biol Chem (2009) 0.94
Observation of a calcium-binding site in the gamma-class carbonic anhydrase from Pyrococcus horikoshii. Acta Crystallogr D Biol Crystallogr (2008) 0.94
Identification and characterization of a second chromophore of DNA photolyase from Thermus thermophilus HB27. J Biol Chem (2005) 0.94
Structure of D-alanine-D-alanine ligase from Thermus thermophilus HB8: cumulative conformational change and enzyme-ligand interactions. Acta Crystallogr D Biol Crystallogr (2009) 0.94
Oxyanion hole-stabilized stereospecific isomerization in ribose-5-phosphate isomerase (Rpi). J Biol Chem (2003) 0.94
Functional reconstitution of a crenarchaeal splicing endonuclease in vitro. Biochem Biophys Res Commun (2005) 0.93
X-ray crystal structure of a hypothetical Sua5 protein from Sulfolobus tokodaii strain 7. Proteins (2008) 0.93
Crystal structure of family 5 uracil-DNA glycosylase bound to DNA. J Mol Biol (2007) 0.93
Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8. J Bacteriol (2007) 0.92
Solution structure of ribosomal protein L16 from Thermus thermophilus HB8. J Mol Biol (2004) 0.92
Thermus thermophilus MutS2, a MutS paralogue, possesses an endonuclease activity promoted by MutL. J Biochem (2004) 0.92
Increased rigidity of domain structures enhances the stability of a mutant enzyme created by directed evolution. Biochemistry (2003) 0.92
Crystal structure of a lysine biosynthesis enzyme, LysX, from Thermus thermophilus HB8. J Mol Biol (2003) 0.92
Theory for trivial trajectory parallelization of multicanonical molecular dynamics and application to a polypeptide in water. J Comput Chem (2010) 0.91
Crystal structure of a family 4 uracil-DNA glycosylase from Thermus thermophilus HB8. J Mol Biol (2003) 0.90
Structural basis of the water-assisted asparagine recognition by asparaginyl-tRNA synthetase. J Mol Biol (2006) 0.90
Molecular mechanism of the Thermus thermophilus ADP-ribose pyrophosphatase from mutational and kinetic studies. Biochemistry (2005) 0.90
Cyclopropanecarboxylic acid esters as potential prodrugs with enhanced hydrolytic stability. Org Lett (2008) 0.90
Crystal structures of Lymnaea stagnalis AChBP in complex with neonicotinoid insecticides imidacloprid and clothianidin. Invert Neurosci (2008) 0.90
Ab initio molecular orbital study on the G-selectivity of GGG triplet in copper(I)-mediated one-electron oxidation. J Am Chem Soc (2003) 0.90
Lysine and arginine biosyntheses mediated by a common carrier protein in Sulfolobus. Nat Chem Biol (2013) 0.89
Ligand-induced conformational changes and a reaction intermediate in branched-chain 2-oxo acid dehydrogenase (E1) from Thermus thermophilus HB8, as revealed by X-ray crystallography. J Mol Biol (2004) 0.89
Insights into different dependence of dNTP triphosphohydrolase on metal ion species from intracellular ion concentrations in Thermus thermophilus. Extremophiles (2007) 0.89
Crystal structure of MutS2 endonuclease domain and the mechanism of homologous recombination suppression. J Biol Chem (2008) 0.88
Crystal structure of a novel polyisoprenoid-binding protein from Thermus thermophilus HB8. Protein Sci (2005) 0.87
A single amino acid limits the substrate specificity of Thermus thermophilus uridine-cytidine kinase to cytidine. Biochemistry (2011) 0.87
Structure of aldolase from Thermus thermophilus HB8 showing the contribution of oligomeric state to thermostability. Acta Crystallogr D Biol Crystallogr (2004) 0.87
Structure and Function of the Small MutS-Related Domain. Mol Biol Int (2011) 0.87
Investigation of the cyclobutane pyrimidine dimer (CPD) photolyase DNA recognition mechanism by NMR analyses. J Biol Chem (2004) 0.87
Crystal structure of the conserved hypothetical protein TTHA1606 from Thermus thermophilus HB8. Proteins (2009) 0.86
RIKEN aids international structural genomics efforts. Nature (2007) 0.86
Two dNTP triphosphohydrolases from Pseudomonas aeruginosa possess diverse substrate specificities. FEBS J (2009) 0.86
NMR study of repair mechanism of DNA photolyase by FAD-induced paramagnetic relaxation enhancement. J Biol Chem (2004) 0.86
ATP-induced structural change of dephosphocoenzyme A kinase from Thermus thermophilus HB8. Proteins (2005) 0.86
Crystal structure of MqnD (TTHA1568), a menaquinone biosynthetic enzyme from Thermus thermophilus HB8. J Struct Biol (2009) 0.86
Crystal structure of TTHA0252 from Thermus thermophilus HB8, a RNA degradation protein of the metallo-beta-lactamase superfamily. J Biochem (2006) 0.85
Characterization of growth-supporting factors produced by Geobacillus toebii for the commensal thermophile Symbiobacterium toebii. J Microbiol Biotechnol (2008) 0.85
Structure of Thermus thermophilus HB8 H-protein of the glycine-cleavage system, resolved by a six-dimensional molecular-replacement method. Acta Crystallogr D Biol Crystallogr (2003) 0.85
The Nudix hydrolase Ndx1 from Thermus thermophilus HB8 is a diadenosine hexaphosphate hydrolase with a novel activity. J Biol Chem (2004) 0.85
Characterization of C- and N-terminal domains of Aquifex aeolicus MutL endonuclease: N-terminal domain stimulates the endonuclease activity of C-terminal domain in a zinc-dependent manner. Biosci Rep (2011) 0.84
Improved heterologous gene expression in Escherichia coli by optimization of the AT-content of codons immediately downstream of the initiation codon. J Biotechnol (2005) 0.84
Structure of D-lactate dehydrogenase from Aquifex aeolicus complexed with NAD(+) and lactic acid (or pyruvate). Acta Crystallogr Sect F Struct Biol Cryst Commun (2009) 0.84
Crystallization screening test for the whole-cell project on Thermus thermophilus HB8. Acta Crystallogr Sect F Struct Biol Cryst Commun (2008) 0.84
Structure of a putative molybdenum-cofactor biosynthesis protein C (MoaC) from Sulfolobus tokodaii (ST0472). Acta Crystallogr Sect F Struct Biol Cryst Commun (2008) 0.84
Cloning, expression, purification, crystallization and preliminary X-ray crystallographic study of the putative SAICAR synthetase (PH0239) from Pyrococcus horikoshii OT3. Acta Crystallogr Sect F Struct Biol Cryst Commun (2010) 0.83
Structure of archaeal glyoxylate reductase from Pyrococcus horikoshii OT3 complexed with nicotinamide adenine dinucleotide phosphate. Acta Crystallogr D Biol Crystallogr (2007) 0.83
MutS stimulates the endonuclease activity of MutL in an ATP-hydrolysis-dependent manner. FEBS J (2013) 0.83