Published in Bioinformatics on August 09, 2005
The PROSITE database. Nucleic Acids Res (2006) 8.11
PROSITE, a protein domain database for functional characterization and annotation. Nucleic Acids Res (2009) 7.47
ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins. Nucleic Acids Res (2006) 6.13
The 20 years of PROSITE. Nucleic Acids Res (2007) 6.06
New and continuing developments at PROSITE. Nucleic Acids Res (2012) 4.41
TIME FOR COFFEE encodes a nuclear regulator in the Arabidopsis thaliana circadian clock. Plant Cell (2007) 1.38
A structure filter for the Eukaryotic Linear Motif Resource. BMC Bioinformatics (2009) 1.16
Construction and analysis of a plant non-specific lipid transfer protein database (nsLTPDB). BMC Genomics (2012) 1.00
ComPath: comparative enzyme analysis and annotation in pathway/subsystem contexts. BMC Bioinformatics (2008) 0.87
Calpain 3 is a rapid-action, unidirectional proteolytic switch central to muscle remodeling. PLoS One (2010) 0.83
Deep targeted sequencing in pediatric acute lymphoblastic leukemia unveils distinct mutational patterns between genetic subtypes and novel relapse-associated genes. Oncotarget (2016) 0.79
Impaired Mitochondrial Energy Production Causes Light-Induced Photoreceptor Degeneration Independent of Oxidative Stress. PLoS Biol (2015) 0.79
Graph representation of high-dimensional alpha-helical membrane protein data. BioData Min (2013) 0.77
Structural Insight for Roles of DR5 Death Domain Mutations on Oligomerization of DR5 Death Domain-FADD Complex in the Death-Inducing Signaling Complex Formation: A Computational Study. J Mol Model (2016) 0.77
Virtual interactomics of proteins from biochemical standpoint. Mol Biol Int (2012) 0.75
ASAP: a machine learning framework for local protein properties. Database (Oxford) (2016) 0.75
Evolutionary Influenced Interaction Pattern as Indicator for the Investigation of Natural Variants Causing Nephrogenic Diabetes Insipidus. Comput Math Methods Med (2015) 0.75
Sequence-based appraisal of the genes encoding neck and carbohydrate recognition domain of conglutinin in blackbuck (Antilope cervicapra) and goat (Capra hircus). Biomed Res Int (2014) 0.75
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res (2003) 52.80
UniProt: the Universal Protein knowledgebase. Nucleic Acids Res (2004) 29.05
InterPro: the integrative protein signature database. Nucleic Acids Res (2008) 25.07
The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Res (2003) 24.72
The Universal Protein Resource (UniProt): an expanding universe of protein information. Nucleic Acids Res (2006) 22.70
InterPro, progress and status in 2005. Nucleic Acids Res (2005) 17.53
ExPASy: The proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Res (2003) 17.39
IntAct: an open source molecular interaction database. Nucleic Acids Res (2004) 15.02
The PROSITE database, its status in 2002. Nucleic Acids Res (2002) 14.71
InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res (2011) 13.45
Automated annotation of microbial proteomes in SWISS-PROT. Comput Biol Chem (2003) 13.44
New developments in the InterPro database. Nucleic Acids Res (2007) 12.49
Recent improvements to the PROSITE database. Nucleic Acids Res (2004) 11.89
Infrastructure for the life sciences: design and implementation of the UniProt website. BMC Bioinformatics (2009) 8.87
PROSITE: a documented database using patterns and profiles as motif descriptors. Brief Bioinform (2002) 8.77
The Swiss-Prot protein knowledgebase and ExPASy: providing the plant community with high quality proteomic data and tools. Plant Physiol Biochem (2004) 8.59
The PROSITE database. Nucleic Acids Res (2006) 8.11
PROSITE, a protein domain database for functional characterization and annotation. Nucleic Acids Res (2009) 7.47
Calling on a million minds for community annotation in WikiProteins. Genome Biol (2008) 7.11
UniProtKB/Swiss-Prot. Methods Mol Biol (2007) 7.05
ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins. Nucleic Acids Res (2006) 6.13
The 20 years of PROSITE. Nucleic Acids Res (2007) 6.06
ScanProsite: a reference implementation of a PROSITE scanning tool. Appl Bioinformatics (2002) 5.81
High-quality protein knowledge resource: SWISS-PROT and TrEMBL. Brief Bioinform (2002) 4.95
IntEnz, the integrated relational enzyme database. Nucleic Acids Res (2004) 4.65
A large-scale evaluation of computational protein function prediction. Nat Methods (2013) 4.61
New and continuing developments at PROSITE. Nucleic Acids Res (2012) 4.41
HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot. Nucleic Acids Res (2008) 3.29
Mass spectrometry in high-throughput proteomics: ready for the big time. Nat Methods (2010) 2.91
The genome of the fire ant Solenopsis invicta. Proc Natl Acad Sci U S A (2011) 2.74
InterPro: an integrated documentation resource for protein families, domains and functional sites. Brief Bioinform (2002) 2.66
The Sulfinator: predicting tyrosine sulfation sites in protein sequences. Bioinformatics (2002) 2.51
UniPathway: a resource for the exploration and annotation of metabolic pathways. Nucleic Acids Res (2011) 2.45
Protein sequence databases. Curr Opin Chem Biol (2004) 2.43
The human proteome project: current state and future direction. Mol Cell Proteomics (2011) 2.34
The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome. Nat Biotechnol (2012) 2.14
CTdatabase: a knowledge-base of high-throughput and curated data on cancer-testis antigens. Nucleic Acids Res (2008) 2.14
The Swiss-Prot variant page and the ModSNP database: a resource for sequence and structure information on human protein variants. Hum Mutat (2004) 1.97
Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Res (2010) 1.97
FindPept, a tool to identify unmatched masses in peptide mass fingerprinting protein identification. Proteomics (2002) 1.83
neXtProt: organizing protein knowledge in the context of human proteome projects. J Proteome Res (2012) 1.80
neXtProt: a knowledge platform for human proteins. Nucleic Acids Res (2011) 1.77
Metrics for the Human Proteome Project 2013-2014 and strategies for finding missing proteins. J Proteome Res (2013) 1.76
Annotation of post-translational modifications in the Swiss-Prot knowledge base. Proteomics (2004) 1.76
PeroxiBase: a database with new tools for peroxidase family classification. Nucleic Acids Res (2008) 1.68
ViralZone: a knowledge resource to understand virus diversity. Nucleic Acids Res (2010) 1.66
The novel yeast PAS kinase Rim 15 orchestrates G0-associated antioxidant defense mechanisms. Cell Cycle (2004) 1.57
Protein variety and functional diversity: Swiss-Prot annotation in its biological context. C R Biol (2005) 1.54
Annotating single amino acid polymorphisms in the UniProt/Swiss-Prot knowledgebase. Hum Mutat (2008) 1.50
Tox-Prot, the toxin protein annotation program of the Swiss-Prot protein knowledgebase. Toxicon (2004) 1.47
In vivo analysis of the overlapping functions of DnaK and trigger factor. EMBO Rep (2004) 1.42
The UniProtKB/Swiss-Prot knowledgebase and its Plant Proteome Annotation Program. J Proteomics (2008) 1.38
Identification of the gene encoding alkylglycerol monooxygenase defines a third class of tetrahydrobiopterin-dependent enzymes. Proc Natl Acad Sci U S A (2010) 1.33
Towards BioDBcore: a community-defined information specification for biological databases. Database (Oxford) (2011) 1.24
OpenFluDB, a database for human and animal influenza virus. Database (Oxford) (2010) 1.20
Standard guidelines for the chromosome-centric human proteome project. J Proteome Res (2012) 1.20
Plant protein annotation in the UniProt Knowledgebase. Plant Physiol (2005) 1.15
Managing the data explosion. A report on the HUPO-PSI Workshop. August 2008, Amsterdam, The Netherlands. Proteomics (2009) 1.04
A chromosome-centric human proteome project (C-HPP) to characterize the sets of proteins encoded in chromosome 17. J Proteome Res (2012) 1.03
The human proteome project: Current state and future direction. Mol Cell Proteomics (2011) 0.96
ViralZone: recent updates to the virus knowledge resource. Nucleic Acids Res (2012) 0.96
Industrial-scale proteomics: from liters of plasma to chemically synthesized proteins. Proteomics (2004) 0.96
Human aldehyde dehydrogenase genes: alternatively spliced transcriptional variants and their suggested nomenclature. Pharmacogenet Genomics (2009) 0.95
Yeast Mon2p is a highly conserved protein that functions in the cytoplasm-to-vacuole transport pathway and is required for Golgi homeostasis. J Cell Sci (2005) 0.95
Functional identification of APIP as human mtnB, a key enzyme in the methionine salvage pathway. PLoS One (2012) 0.91
A large-scale protein-function database. Nat Chem Biol (2010) 0.86
Catalytic residues and a predicted structure of tetrahydrobiopterin-dependent alkylglycerol mono-oxygenase. Biochem J (2012) 0.85
Archaeal β-CASP ribonucleases of the aCPSF1 family are orthologs of the eukaryal CPSF-73 factor. Nucleic Acids Res (2012) 0.81
Norepinephrine induces lipolysis in beta1/beta2/beta3-adrenoceptor knockout mice. Mol Pharmacol (2005) 0.80
Animal Toxins: How is Complexity Represented in Databases? Toxins (Basel) (2010) 0.79
A new gene in Drosophila melanogaster, Ravus, the phantom of the modifier of position-effect variegation Su(var)3-7. Int J Dev Biol (2002) 0.79
[From genome to proteome--aim of human proteomics]. Seikagaku (2004) 0.77
Post-translational modifications: a challenge for proteomics and bioinformatics. Proteomics (2004) 0.76
Uncovering intense protein diversification in a cone snail venom gland using an integrative venomics approach. J Proteome Res (2015) 0.76
The application of bioinformatics to mass spectrometry. Proteomics (2002) 0.75