Published in Nucleic Acids Res on November 28, 2012
NCBI viral genomes resource. Nucleic Acids Res (2014) 1.26
VirHostNet 2.0: surfing on the web of virus/host molecular interactions data. Nucleic Acids Res (2014) 0.95
Powerful sequence similarity search methods and in-depth manual analyses can identify remote homologs in many apparently "orphan" viral proteins. J Virol (2013) 0.93
DBatVir: the database of bat-associated viruses. Database (Oxford) (2014) 0.86
Linking Virus Genomes with Host Taxonomy. Viruses (2016) 0.80
Gene overlapping and size constraints in the viral world. Biol Direct (2016) 0.79
Antiviral responses of arthropod vectors: an update on recent advances. Virusdisease (2014) 0.79
Representing virus-host interactions and other multi-organism processes in the Gene Ontology. BMC Microbiol (2015) 0.76
SugarBindDB, a resource of glycan-mediated host-pathogen interactions. Nucleic Acids Res (2015) 0.76
viruSITE-integrated database for viral genomics. Database (Oxford) (2016) 0.75
Databases for Microbiologists. J Bacteriol (2015) 0.75
NCBI Reference Sequences: current status, policy and new initiatives. Nucleic Acids Res (2008) 26.04
The Universal Protein Resource (UniProt) in 2010. Nucleic Acids Res (2009) 19.70
Synthesis of full length cDNAs from four partially purified oviduct mRNAs. J Biol Chem (1978) 3.92
Influenza research database: an integrated bioinformatics resource for influenza research and surveillance. Influenza Other Respir Viruses (2012) 3.04
New insight in the pathobiology of hepatitis B virus infection. Gut (2012) 2.54
VIPERdb2: an enhanced and web API enabled relational database for structural virology. Nucleic Acids Res (2008) 2.38
The origin of viruses and their possible roles in major evolutionary transitions. Virus Res (2006) 2.21
Viral IRES RNA structures and ribosome interactions. Trends Biochem Sci (2008) 2.17
ViralZone: a knowledge resource to understand virus diversity. Nucleic Acids Res (2010) 1.66
Three-dimensional visualization of gammaherpesvirus life cycle in host cells by electron tomography. Structure (2010) 1.65
STAT1 and pathogens, not a friendly relationship. Biochimie (2010) 1.23
OpenFluDB, a database for human and animal influenza virus. Database (Oxford) (2010) 1.20
Nuclear export and import of human hepatitis B virus capsid protein and particles. PLoS Pathog (2010) 1.18
DPVweb: a comprehensive database of plant and fungal virus genes and genomes. Nucleic Acids Res (2006) 1.10
Ontology driven dynamic linking of biology resources. Pac Symp Biocomput (2005) 1.04
T7 RNA polymerase. Prog Nucleic Acid Res Mol Biol (2003) 1.01
The universal system of virus taxonomy of the International Committee on Virus Taxonomy (ICTV), including new proposals ratified since publication of the Sixth ICTV Report in 1995. Arch Virol (1998) 0.97
Lentivirus as a potent and mechanistically distinct vector for genetic immunization. Curr Opin Mol Ther (2007) 0.97
Ribosomal frameshifting, jumping and readthrough. Curr Opin Cell Biol (1991) 0.94
The replication cycle of hepatitis B virus. J Hepatol (2009) 0.91
Innate immunity modulation in virus entry. Curr Opin Virol (2011) 0.86
The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data. Nat Biotechnol (2004) 16.08
Recent improvements to the PROSITE database. Nucleic Acids Res (2004) 11.89
The minimum information required for reporting a molecular interaction experiment (MIMIx). Nat Biotechnol (2007) 8.24
Protein interactions: two methods for assessment of the reliability of high throughput observations. Mol Cell Proteomics (2002) 8.11
The PROSITE database. Nucleic Acids Res (2006) 8.11
Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions. BMC Biol (2007) 8.03
The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models. Nat Biotechnol (2010) 7.08
The UniProt-GO Annotation database in 2011. Nucleic Acids Res (2011) 5.19
Probabilistic base calling of Solexa sequencing data. BMC Bioinformatics (2008) 5.00
Toward interoperable bioscience data. Nat Genet (2012) 4.72
New and continuing developments at PROSITE. Nucleic Acids Res (2012) 4.41
Microarray deacetylation maps determine genome-wide functions for yeast histone deacetylases. Cell (2002) 4.38
T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension. Nucleic Acids Res (2011) 4.00
ExPASy: SIB bioinformatics resource portal. Nucleic Acids Res (2012) 3.70
ProRule: a new database containing functional and structural information on PROSITE profiles. Bioinformatics (2005) 3.41
HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot. Nucleic Acids Res (2008) 3.29
Protein interaction data curation: the International Molecular Exchange (IMEx) consortium. Nat Methods (2012) 3.17
Genetic and physiological data implicating the new human gene G72 and the gene for D-amino acid oxidase in schizophrenia. Proc Natl Acad Sci U S A (2002) 3.11
Exome sequencing identifies recurrent somatic MAP2K1 and MAP2K2 mutations in melanoma. Nat Genet (2011) 3.10
Rhea--a manually curated resource of biochemical reactions. Nucleic Acids Res (2011) 2.87
Describing biological protein interactions in terms of protein states and state transitions: the LiveDIP database. Mol Cell Proteomics (2002) 2.76
The genome of the fire ant Solenopsis invicta. Proc Natl Acad Sci U S A (2011) 2.74
The Microbe browser for comparative genomics. Nucleic Acids Res (2009) 2.71
UniPathway: a resource for the exploration and annotation of metabolic pathways. Nucleic Acids Res (2011) 2.45
euHCVdb: the European hepatitis C virus database. Nucleic Acids Res (2006) 2.41
A common polymorphism of the growth hormone receptor is associated with increased responsiveness to growth hormone. Nat Genet (2004) 2.30
HAMAP in 2013, new developments in the protein family classification and annotation system. Nucleic Acids Res (2012) 2.16
A method for the generation of standardized qualitative dynamical systems of regulatory networks. Theor Biol Med Model (2006) 2.14
Guidelines for reporting the use of mass spectrometry in proteomics. Nat Biotechnol (2008) 1.90
Proteomic analysis of the mouse liver mitochondrial inner membrane. J Biol Chem (2003) 1.86
Synchronous versus asynchronous modeling of gene regulatory networks. Bioinformatics (2008) 1.85
Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling. Plant J (2012) 1.84
Systemic soluble receptor for advanced glycation endproducts is a biomarker of emphysema and associated with AGER genetic variants in patients with chronic obstructive pulmonary disease. Am J Respir Crit Care Med (2013) 1.79
Expression profiling of human immune cell subsets identifies miRNA-mRNA regulatory relationships correlated with cell type specific expression. PLoS One (2012) 1.76
Dynamic simulation of regulatory networks using SQUAD. BMC Bioinformatics (2007) 1.75
GENECOUNTING: haplotype analysis with missing genotypes. Bioinformatics (2002) 1.74
ViralZone: a knowledge resource to understand virus diversity. Nucleic Acids Res (2010) 1.66
FastEpistasis: a high performance computing solution for quantitative trait epistasis. Bioinformatics (2010) 1.58
The UniProtKB/Swiss-Prot knowledgebase and its Plant Proteome Annotation Program. J Proteomics (2008) 1.38
CDK9 regulates AR promoter selectivity and cell growth through serine 81 phosphorylation. Mol Endocrinol (2010) 1.35
Viral DNA polymerase scanning and the gymnastics of Sendai virus RNA synthesis. Virology (2004) 1.33
Differential proteomics via probabilistic peptide identification scores. Anal Chem (2005) 1.31
MIMAS 3.0 is a Multiomics Information Management and Annotation System. BMC Bioinformatics (2009) 1.24
Evolutionary trajectories of primate genes involved in HIV pathogenesis. Mol Biol Evol (2009) 1.23
OpenFluDB, a database for human and animal influenza virus. Database (Oxford) (2010) 1.20
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools. BMC Syst Biol (2013) 1.20
Bleomycin induces molecular changes directly relevant to idiopathic pulmonary fibrosis: a model for "active" disease. PLoS One (2013) 1.20
ENFIN--A European network for integrative systems biology. C R Biol (2009) 1.17
Database resources for the tuberculosis community. Tuberculosis (Edinb) (2013) 1.16
Conceptual framework and pilot study to benchmark phylogenomic databases based on reference gene trees. Brief Bioinform (2011) 1.15
Reconciliation of metabolites and biochemical reactions for metabolic networks. Brief Bioinform (2012) 1.14
Improving basic and translational science by accounting for litter-to-litter variation in animal models. BMC Neurosci (2013) 1.12
The UniProtKB/Swiss-Prot Tox-Prot program: A central hub of integrated venom protein data. Toxicon (2012) 1.12
Transcriptomic analysis of the woodchuck model of chronic hepatitis B. Hepatology (2012) 1.10
Network-guided analysis of genes with altered somatic copy number and gene expression reveals pathways commonly perturbed in metastatic melanoma. PLoS One (2011) 1.09
Voluntary exploratory data submissions to the US FDA and the EMA: experience and impact. Nat Rev Drug Discov (2010) 1.08
Substantial deletion overlap among divergent Arabidopsis genomes revealed by intersection of short reads and tiling arrays. Genome Biol (2010) 1.08
R-Coffee: a web server for accurately aligning noncoding RNA sequences. Nucleic Acids Res (2008) 1.07
The frequency of anti-infliximab antibodies in patients with rheumatoid arthritis treated in routine care and the associations with adverse drug reactions and treatment failure. Rheumatology (Oxford) (2013) 1.07
Systemic biomarkers of neutrophilic inflammation, tissue injury and repair in COPD patients with differing levels of disease severity. PLoS One (2012) 1.03
Sendai virus targets inflammatory responses, as well as the interferon-induced antiviral state, in a multifaceted manner. J Virol (2003) 1.03
Common haplotypes in five genes influence genetic variance of LDL and HDL cholesterol in the general population. Hum Mol Genet (2002) 1.02
Hard-wired heterogeneity in blood stem cells revealed using a dynamic regulatory network model. Bioinformatics (2013) 1.02
Interpatient variability in IMPDH activity in MMF-treated renal transplant patients is correlated with IMPDH type II 3757T > C polymorphism. Pharmacogenet Genomics (2009) 1.00
Investigation of single nucleotide polymorphisms and biological pathways associated with response to TNFα inhibitors in patients with rheumatoid arthritis. Pharmacogenet Genomics (2012) 1.00
Identification of a kinase profile that predicts chromosome damage induced by small molecule kinase inhibitors. PLoS Comput Biol (2009) 1.00
Determination of the human cardiomyocyte mRNA and miRNA differentiation network by fine-scale profiling. Stem Cells Dev (2012) 0.99
High-performance peptide identification by tandem mass spectrometry allows reliable automatic data processing in proteomics. Proteomics (2004) 0.98
Association of four DNA polymorphisms with acute rejection after kidney transplantation. Transpl Int (2008) 0.98
Towards Viral Genome Annotation Standards, Report from the 2010 NCBI Annotation Workshop. Viruses (2010) 0.97
Modeling stochasticity and robustness in gene regulatory networks. Bioinformatics (2009) 0.97
TIE-2 and VEGFR kinase activities drive immunosuppressive function of TIE-2-expressing monocytes in human breast tumors. Clin Cancer Res (2013) 0.97
Industrial-scale proteomics: from liters of plasma to chemically synthesized proteins. Proteomics (2004) 0.96
A qualitative continuous model of cellular auxin and brassinosteroid signaling and their crosstalk. Bioinformatics (2011) 0.94
Microarray analysis of isolated human islet transcriptome in type 2 diabetes and the role of the ubiquitin-proteasome system in pancreatic beta cell dysfunction. Mol Cell Endocrinol (2012) 0.93
In vitro and in silico processes to identify differentially expressed proteins. Proteomics (2004) 0.93
Identification of an intrahepatic transcriptional signature associated with self-limiting infection in the woodchuck model of hepatitis B. Hepatology (2013) 0.93
Multiple imputations applied to the DREAM3 phosphoproteomics challenge: a winning strategy. PLoS One (2010) 0.91
Modeling of multiple valued gene regulatory networks. Conf Proc IEEE Eng Med Biol Soc (2007) 0.90
Thymic stromal lymphopoietin receptor blockade reduces allergic inflammation in a cynomolgus monkey model of asthma. J Allergy Clin Immunol (2013) 0.89
Evolution of the ferric reductase domain (FRD) superfamily: modularity, functional diversification, and signature motifs. PLoS One (2013) 0.89
Molecular docking of competitive phosphodiesterase inhibitors. Mol Pharmacol (2002) 0.89
A chemical proteomics approach to phosphatidylinositol 3-kinase signaling in macrophages. Mol Cell Proteomics (2007) 0.88
The EMPRES-i genetic module: a novel tool linking epidemiological outbreak information and genetic characteristics of influenza viruses. Database (Oxford) (2014) 0.88