Published in Nucleic Acids Res on October 14, 2010
Ongoing and future developments at the Universal Protein Resource. Nucleic Acids Res (2010) 11.32
Phages preying on Bacillus anthracis, Bacillus cereus, and Bacillus thuringiensis: past, present and future. Viruses (2014) 1.02
ViralZone: recent updates to the virus knowledge resource. Nucleic Acids Res (2012) 0.96
A phylogenomic data-driven exploration of viral origins and evolution. Sci Adv (2015) 0.91
Unraveling the web of viroinformatics: computational tools and databases in virus research. J Virol (2014) 0.88
An allometric relationship between the genome length and virion volume of viruses. J Virol (2014) 0.86
Collagen-like proteins in pathogenic E. coli strains. PLoS One (2012) 0.85
Marked variability in the extent of protein disorder within and between viral families. PLoS One (2013) 0.84
Finding small molecules for the 'next Ebola'. F1000Res (2015) 0.84
Mapping the shapes of phylogenetic trees from human and zoonotic RNA viruses. PLoS One (2013) 0.84
Synonymous mutations reduce genome compactness in icosahedral ssRNA viruses. Biophys J (2015) 0.83
Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support. Nucleic Acids Res (2014) 0.83
The distribution and impact of viral lineages in domains of life. Front Microbiol (2014) 0.82
Genomic analysis of cold-active Colwelliaphage 9A and psychrophilic phage-host interactions. Extremophiles (2012) 0.80
Detection of viral proteins in human cells lines by xeno-proteomics: elimination of the last valid excuse for not testing every cellular proteome dataset for viral proteins. PLoS One (2014) 0.78
Intracellular nucleic acid delivery by the supercharged dengue virus capsid protein. PLoS One (2013) 0.78
Zika Virus Diseases - The New Face of an Ancient Enemy as Global Public Health Emergency (2016): Brief Review and Recent Updates. Int J Prev Med (2017) 0.78
A census of α-helical membrane proteins in double-stranded DNA viruses infecting bacteria and archaea. BMC Bioinformatics (2015) 0.77
Expanding our Understanding of the Seaweed Holobiont: RNA Viruses of the Red Alga Delisea pulchra. Front Microbiol (2016) 0.76
PhIN: A Protein Pharmacology Interaction Network Database. CPT Pharmacometrics Syst Pharmacol (2015) 0.76
Representing virus-host interactions and other multi-organism processes in the Gene Ontology. BMC Microbiol (2015) 0.76
Grouping of large populations into few CTL immune 'response-types' from influenza H1N1 genome analysis. Clin Transl Immunology (2014) 0.76
Visualizing viral protein structures in cells using genetic probes for correlated light and electron microscopy. Methods (2015) 0.76
Improving HIV proteome annotation: new features of BioAfrica HIV Proteomics Resource. Database (Oxford) (2016) 0.75
The ins and outs of eukaryotic viruses: Knowledge base and ontology of a viral infection. PLoS One (2017) 0.75
Identification of Capsid/Coat Related Protein Folds and Their Utility for Virus Classification. Front Microbiol (2017) 0.75
Therapeutic Use of Native and Recombinant Enteroviruses. Viruses (2016) 0.75
SeeHaBITaT: A server on bioinformatics applications for Tospoviruses and other species. Appl Transl Genom (2016) 0.75
Overview on the Current Status of Zika Virus Pathogenesis and Animal Related Research. J Neuroimmune Pharmacol (2017) 0.75
A comparative review of viral entry and attachment during large and giant dsDNA virus infections. Arch Virol (2017) 0.75
Viral communities of the human gut: metagenomic analysis of composition and dynamics. Mob DNA (2017) 0.75
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet (2000) 336.52
The Gene Ontology in 2010: extensions and refinements. Nucleic Acids Res (2009) 11.49
Retracted Detection of an infectious retrovirus, XMRV, in blood cells of patients with chronic fatigue syndrome. Science (2009) 10.76
Marine viruses--major players in the global ecosystem. Nat Rev Microbiol (2007) 10.14
Viruses in the sea. Nature (2005) 7.61
Retracted XMRV is present in malignant prostatic epithelium and is associated with prostate cancer, especially high-grade tumors. Proc Natl Acad Sci U S A (2009) 6.72
Expression of animal virus genomes. Bacteriol Rev (1971) 4.33
VIPERdb: a relational database for structural virology. Nucleic Acids Res (2006) 2.46
New dimensions of the virus world discovered through metagenomics. Trends Microbiol (2009) 2.41
VIPERdb2: an enhanced and web API enabled relational database for structural virology. Nucleic Acids Res (2008) 2.38
The origin of viruses and their possible roles in major evolutionary transitions. Virus Res (2006) 2.21
National center for biotechnology information viral genomes project. J Virol (2004) 1.84
Porcine circoviruses--small but powerful. Virus Res (2009) 1.55
Viral adaptation to host: a proteome-based analysis of codon usage and amino acid preferences. Mol Syst Biol (2009) 1.48
The last universal common ancestor: emergence, constitution and genetic legacy of an elusive forerunner. Biol Direct (2008) 1.40
Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2008). Arch Virol (2009) 1.37
Herpes simplex virus. Front Biosci (2002) 1.32
On the origin of cells and viruses: primordial virus world scenario. Ann N Y Acad Sci (2009) 1.29
Ebolavirus and Marburgvirus: insight the Filoviridae family. Mol Aspects Med (2007) 1.23
OpenFluDB, a database for human and animal influenza virus. Database (Oxford) (2010) 1.20
Herpes virus replication. IUBMB Life (2003) 1.12
DPVweb: a comprehensive database of plant and fungal virus genes and genomes. Nucleic Acids Res (2006) 1.10
The 7th ICTV report. Arch Virol (2001) 0.96
HDV RNA replication: ancient relic or primer? Curr Top Microbiol Immunol (2006) 0.91
Modification of mammalian reoviruses for use as oncolytic agents. Expert Opin Biol Ther (2009) 0.85
Swine flu: influenza A/H1N1 2009: the unseen and unsaid. Future Microbiol (2009) 0.84
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res (2003) 52.80
UniProt: the Universal Protein knowledgebase. Nucleic Acids Res (2004) 29.05
InterPro: the integrative protein signature database. Nucleic Acids Res (2008) 25.07
The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Res (2003) 24.72
The Universal Protein Resource (UniProt): an expanding universe of protein information. Nucleic Acids Res (2006) 22.70
InterPro, progress and status in 2005. Nucleic Acids Res (2005) 17.53
ExPASy: The proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Res (2003) 17.39
The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data. Nat Biotechnol (2004) 16.08
IntAct: an open source molecular interaction database. Nucleic Acids Res (2004) 15.02
The PROSITE database, its status in 2002. Nucleic Acids Res (2002) 14.71
InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res (2011) 13.45
Automated annotation of microbial proteomes in SWISS-PROT. Comput Biol Chem (2003) 13.44
New developments in the InterPro database. Nucleic Acids Res (2007) 12.49
Recent improvements to the PROSITE database. Nucleic Acids Res (2004) 11.89
Infrastructure for the life sciences: design and implementation of the UniProt website. BMC Bioinformatics (2009) 8.87
PROSITE: a documented database using patterns and profiles as motif descriptors. Brief Bioinform (2002) 8.77
The Swiss-Prot protein knowledgebase and ExPASy: providing the plant community with high quality proteomic data and tools. Plant Physiol Biochem (2004) 8.59
The minimum information required for reporting a molecular interaction experiment (MIMIx). Nat Biotechnol (2007) 8.24
Protein interactions: two methods for assessment of the reliability of high throughput observations. Mol Cell Proteomics (2002) 8.11
The PROSITE database. Nucleic Acids Res (2006) 8.11
Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions. BMC Biol (2007) 8.03
The IntAct molecular interaction database in 2012. Nucleic Acids Res (2011) 7.49
PROSITE, a protein domain database for functional characterization and annotation. Nucleic Acids Res (2009) 7.47
Calling on a million minds for community annotation in WikiProteins. Genome Biol (2008) 7.11
UniProtKB/Swiss-Prot. Methods Mol Biol (2007) 7.05
ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins. Nucleic Acids Res (2006) 6.13
The 20 years of PROSITE. Nucleic Acids Res (2007) 6.06
ScanProsite: a reference implementation of a PROSITE scanning tool. Appl Bioinformatics (2002) 5.81
The UniProt-GO Annotation database in 2011. Nucleic Acids Res (2011) 5.19
Probabilistic base calling of Solexa sequencing data. BMC Bioinformatics (2008) 5.00
High-quality protein knowledge resource: SWISS-PROT and TrEMBL. Brief Bioinform (2002) 4.95
Toward interoperable bioscience data. Nat Genet (2012) 4.72
IntEnz, the integrated relational enzyme database. Nucleic Acids Res (2004) 4.65
A large-scale evaluation of computational protein function prediction. Nat Methods (2013) 4.61
New and continuing developments at PROSITE. Nucleic Acids Res (2012) 4.41
Microarray deacetylation maps determine genome-wide functions for yeast histone deacetylases. Cell (2002) 4.38
T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension. Nucleic Acids Res (2011) 4.00
ExPASy: SIB bioinformatics resource portal. Nucleic Acids Res (2012) 3.70
ProRule: a new database containing functional and structural information on PROSITE profiles. Bioinformatics (2005) 3.41
HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot. Nucleic Acids Res (2008) 3.29
Protein interaction data curation: the International Molecular Exchange (IMEx) consortium. Nat Methods (2012) 3.17
Genetic and physiological data implicating the new human gene G72 and the gene for D-amino acid oxidase in schizophrenia. Proc Natl Acad Sci U S A (2002) 3.11
Exome sequencing identifies recurrent somatic MAP2K1 and MAP2K2 mutations in melanoma. Nat Genet (2011) 3.10
Mass spectrometry in high-throughput proteomics: ready for the big time. Nat Methods (2010) 2.91
Crystal structure of human butyrylcholinesterase and of its complexes with substrate and products. J Biol Chem (2003) 2.88
Rhea--a manually curated resource of biochemical reactions. Nucleic Acids Res (2011) 2.87
Describing biological protein interactions in terms of protein states and state transitions: the LiveDIP database. Mol Cell Proteomics (2002) 2.76
The genome of the fire ant Solenopsis invicta. Proc Natl Acad Sci U S A (2011) 2.74
The Microbe browser for comparative genomics. Nucleic Acids Res (2009) 2.71
InterPro: an integrated documentation resource for protein families, domains and functional sites. Brief Bioinform (2002) 2.66
The Sulfinator: predicting tyrosine sulfation sites in protein sequences. Bioinformatics (2002) 2.51
UniPathway: a resource for the exploration and annotation of metabolic pathways. Nucleic Acids Res (2011) 2.45
Protein sequence databases. Curr Opin Chem Biol (2004) 2.43
euHCVdb: the European hepatitis C virus database. Nucleic Acids Res (2006) 2.41
The human proteome project: current state and future direction. Mol Cell Proteomics (2011) 2.34
HAMAP in 2013, new developments in the protein family classification and annotation system. Nucleic Acids Res (2012) 2.16
A method for the generation of standardized qualitative dynamical systems of regulatory networks. Theor Biol Med Model (2006) 2.14
The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome. Nat Biotechnol (2012) 2.14
CTdatabase: a knowledge-base of high-throughput and curated data on cancer-testis antigens. Nucleic Acids Res (2008) 2.14
Butyrylcholinesterase, paraoxonase, and albumin esterase, but not carboxylesterase, are present in human plasma. Biochem Pharmacol (2005) 2.05
The Swiss-Prot variant page and the ModSNP database: a resource for sequence and structure information on human protein variants. Hum Mutat (2004) 1.97
Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Res (2010) 1.97
Guidelines for reporting the use of mass spectrometry in proteomics. Nat Biotechnol (2008) 1.90
Serendipitous discovery and X-ray structure of a human phosphate binding apolipoprotein. Structure (2006) 1.90
Proteomic analysis of the mouse liver mitochondrial inner membrane. J Biol Chem (2003) 1.86
Synchronous versus asynchronous modeling of gene regulatory networks. Bioinformatics (2008) 1.85
Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling. Plant J (2012) 1.84
FindPept, a tool to identify unmatched masses in peptide mass fingerprinting protein identification. Proteomics (2002) 1.83
neXtProt: organizing protein knowledge in the context of human proteome projects. J Proteome Res (2012) 1.80
neXtProt: a knowledge platform for human proteins. Nucleic Acids Res (2011) 1.77
Metrics for the Human Proteome Project 2013-2014 and strategies for finding missing proteins. J Proteome Res (2013) 1.76
Annotation of post-translational modifications in the Swiss-Prot knowledge base. Proteomics (2004) 1.76
Dynamic simulation of regulatory networks using SQUAD. BMC Bioinformatics (2007) 1.75
FastEpistasis: a high performance computing solution for quantitative trait epistasis. Bioinformatics (2010) 1.58
Protein variety and functional diversity: Swiss-Prot annotation in its biological context. C R Biol (2005) 1.54
Annotating single amino acid polymorphisms in the UniProt/Swiss-Prot knowledgebase. Hum Mutat (2008) 1.50
Tox-Prot, the toxin protein annotation program of the Swiss-Prot protein knowledgebase. Toxicon (2004) 1.47
Structural basis for natural lactonase and promiscuous phosphotriesterase activities. J Mol Biol (2008) 1.43
High pressure effects on biological macromolecules: from structural changes to alteration of cellular processes. Biochim Biophys Acta (2002) 1.39
The UniProtKB/Swiss-Prot knowledgebase and its Plant Proteome Annotation Program. J Proteomics (2008) 1.38
CDK9 regulates AR promoter selectivity and cell growth through serine 81 phosphorylation. Mol Endocrinol (2010) 1.35
Engineering of a monomeric and low-glycosylated form of human butyrylcholinesterase: expression, purification, characterization and crystallization. Eur J Biochem (2002) 1.35
Viral DNA polymerase scanning and the gymnastics of Sendai virus RNA synthesis. Virology (2004) 1.33
Differential proteomics via probabilistic peptide identification scores. Anal Chem (2005) 1.31