Published in Bioinformatics on September 27, 2005
Comments on the analysis of unbalanced microarray data. Bioinformatics (2009) 1.66
A comprehensive evaluation of SAM, the SAM R-package and a simple modification to improve its performance. BMC Bioinformatics (2007) 1.55
Evaluating reproducibility of differential expression discoveries in microarray studies by considering correlated molecular changes. Bioinformatics (2009) 1.29
Large-scale detection of ubiquitination substrates using cell extracts and protein microarrays. Proc Natl Acad Sci U S A (2009) 1.23
Inheritance patterns of transcript levels in F1 hybrid mice. Genetics (2006) 1.15
Molecular and anatomical signatures of sleep deprivation in the mouse brain. Front Neurosci (2010) 1.12
Analytical methods in untargeted metabolomics: state of the art in 2015. Front Bioeng Biotechnol (2015) 1.08
A Bayesian approach to efficient differential allocation for resampling-based significance testing. BMC Bioinformatics (2009) 1.07
Wnt antagonist gene polymorphisms and renal cancer. Cancer (2009) 1.04
Genomic regions identified by overlapping clusters of nominally-positive SNPs from genome-wide studies of alcohol and illegal substance dependence. PLoS One (2011) 1.00
Signal propagation in protein interaction network during colorectal cancer progression. Biomed Res Int (2013) 0.91
Estimating the false discovery rate using mixed normal distribution for identifying differentially expressed genes in microarray data analysis. Cancer Inform (2008) 0.87
A constrained polynomial regression procedure for estimating the local False Discovery Rate. BMC Bioinformatics (2007) 0.87
Ranking analysis of F-statistics for microarray data. BMC Bioinformatics (2008) 0.84
An efficient method to identify differentially expressed genes in microarray experiments. Bioinformatics (2008) 0.84
Incorporating prior knowledge to facilitate discoveries in a genome-wide association study on age-related macular degeneration. BMC Res Notes (2010) 0.83
Assessing multivariate gene-metabolome associations with rare variants using Bayesian reduced rank regression. Bioinformatics (2014) 0.82
Literature aided determination of data quality and statistical significance threshold for gene expression studies. BMC Genomics (2012) 0.81
On correcting the overestimation of the permutation-based false discovery rate estimator. Bioinformatics (2008) 0.80
Improving power of genome-wide association studies with weighted false discovery rate control and prioritized subset analysis. PLoS One (2012) 0.79
Properties of balanced permutations. J Comput Biol (2009) 0.79
A new test statistic based on shrunken sample variance for identifying differentially expressed genes in small microarray experiments. Bioinform Biol Insights (2008) 0.79
Genetic markers of comorbid depression and alcoholism in women. Alcohol Clin Exp Res (2012) 0.78
Statistical methods for integrating multiple types of high-throughput data. Methods Mol Biol (2010) 0.77
Evaluation of proteomic biomarkers associated with circulating microparticles as an effective means to stratify the risk of spontaneous preterm birth. Am J Obstet Gynecol (2016) 0.76
Screening of feature genes in distinguishing different types of breast cancer using support vector machine. Onco Targets Ther (2015) 0.75
A Fuzzy Permutation Method for False Discovery Rate Control. Sci Rep (2016) 0.75
Long intergenic non-coding RNA expression signature in human breast cancer. Sci Rep (2016) 0.75
Presenting the uncertainties of odds ratios using empirical-Bayes prediction intervals. PLoS One (2012) 0.75
Comments on 'On correcting the overestimation of the permutation-based false discovery rate estimator'. Bioinformatics (2008) 0.75
A comparison of two classes of methods for estimating false discovery rates in microarray studies. Scientifica (Cairo) (2012) 0.75
An efficient weighted graph strategy to identify differentiation associated genes in embryonic stem cells. PLoS One (2013) 0.75
A permutation-based non-parametric analysis of CRISPR screen data. BMC Genomics (2017) 0.75
Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays. Proc Natl Acad Sci U S A (2002) 6.93
A data-adaptive sum test for disease association with multiple common or rare variants. Hum Hered (2010) 5.95
Comparison of statistical tests for disease association with rare variants. Genet Epidemiol (2011) 3.42
1,25-dihydroxyvitamin D3 suppresses renin gene transcription by blocking the activity of the cyclic AMP response element in the renin gene promoter. J Biol Chem (2007) 2.61
Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli. Genome Biol (2004) 2.60
Likelihood-based selection and sharp parameter estimation. J Am Stat Assoc (2012) 2.21
Spatial patterns of transcriptional activity in the chromosome of Escherichia coli. Genome Biol (2004) 2.15
The Research Diagnostic Criteria for Temporomandibular Disorders. V: methods used to establish and validate revised Axis I diagnostic algorithms. J Orofac Pain (2010) 2.00
Linear regression and two-class classification with gene expression data. Bioinformatics (2003) 1.85
A comparative study of discriminating human heart failure etiology using gene expression profiles. BMC Bioinformatics (2005) 1.85
Penalized model-based clustering with cluster-specific diagonal covariance matrices and grouped variables. Electron J Stat (2008) 1.76
Excerpts from the United States Renal Data System 2003 Annual Data Report: atlas of end-stage renal disease in the United States. Am J Kidney Dis (2003) 1.70
Time-critical social mobilization. Science (2011) 1.65
Incorporating gene networks into statistical tests for genomic data via a spatially correlated mixture model. Bioinformatics (2007) 1.60
Subclinical changes in serum creatinine and mortality after coronary artery bypass grafting. J Thorac Cardiovasc Surg (2011) 1.60
Myc-ARF (alternate reading frame) interaction inhibits the functions of Myc. J Biol Chem (2004) 1.58
Network-based support vector machine for classification of microarray samples. BMC Bioinformatics (2009) 1.49
Preoperative statin therapy decreases risk of postoperative renal insufficiency. Cardiovasc Ther (2010) 1.47
Identification of genes responsible for osteoblast differentiation from human mesodermal progenitor cells. Proc Natl Acad Sci U S A (2003) 1.40
Molecular epidemiology of avian leukosis virus subgroup J in layer flocks in China. J Clin Microbiol (2012) 1.33
A classification based framework for quantitative description of large-scale microarray data. Genome Biol (2006) 1.31
Multi-target drugs: the trend of drug research and development. PLoS One (2012) 1.28
Avian leukosis virus subgroup J in layer chickens, China. Emerg Infect Dis (2010) 1.27
Methods for Estimating and Interpreting Provider-Specific Standardized Mortality Ratios. Health Serv Outcomes Res Methodol (2003) 1.24
Incorporating biological knowledge into distance-based clustering analysis of microarray gene expression data. Bioinformatics (2006) 1.23
Variable selection in penalized model-based clustering via regularization on grouped parameters. Biometrics (2007) 1.23
Modified nonparametric approaches to detecting differentially expressed genes in replicated microarray experiments. Bioinformatics (2003) 1.21
ApoA-I structure on discs and spheres. Variable helix registry and conformational states. J Biol Chem (2002) 1.20
Small-sample performance of the robust score test and its modifications in generalized estimating equations. Stat Med (2005) 1.18
The Research Diagnostic Criteria for Temporomandibular Disorders. III: validity of Axis I diagnoses. J Orofac Pain (2010) 1.15
Modeling the relationship between LVAD support time and gene expression changes in the human heart by penalized partial least squares. Bioinformatics (2004) 1.14
Family protection and prevention of alcohol use among Hispanic youth at high risk. Am J Community Psychol (2005) 1.12
Factors influencing diabetes self-management in Chinese people with type 2 diabetes. Res Nurs Health (2008) 1.09
Comparing three methods for variance estimation with duplicated high density oligonucleotide arrays. Funct Integr Genomics (2002) 1.09
Incorporating prior knowledge of predictors into penalized classifiers with multiple penalty terms. Bioinformatics (2007) 1.09
Analysis of pleiotropic transcriptional profiles: a case study of DNA gyrase inhibition. PLoS Genet (2006) 1.08
A comparison of the perceptions and beliefs of workers and owners with regard to workplace safety in small metal fabrication businesses. Am J Ind Med (2007) 1.07
Powerful multi-marker association tests: unifying genomic distance-based regression and logistic regression. Genet Epidemiol (2010) 1.07
Left atrial dissection associated with pulmonary vein cannulation. Anesth Analg (2009) 1.06
Incorporating prior knowledge of gene functional groups into regularized discriminant analysis of microarray data. Bioinformatics (2007) 1.04
A combination of Trastuzumab and 17-AAG induces enhanced ubiquitinylation and lysosomal pathway-dependent ErbB2 degradation and cytotoxicity in ErbB2-overexpressing breast cancer cells. Cancer Biol Ther (2008) 1.04
Adjustment for population stratification via principal components in association analysis of rare variants. Genet Epidemiol (2012) 1.03
Persistence of the effect of the Lung Health Study (LHS) smoking intervention over eleven years. Prev Med (2002) 1.02
Gene function prediction by a combined analysis of gene expression data and protein-protein interaction data. J Bioinform Comput Biol (2005) 1.02
Polymorphic simple sequence repeat (SSR) loci within cellulose synthase (PtoCesA) genes are associated with growth and wood properties in Populus tomentosa. New Phytol (2012) 1.01
Imaging brain activity during natural vision using CASL perfusion fMRI. Hum Brain Mapp (2007) 1.01
Simultaneous grouping pursuit and feature selection over an undirected graph. J Am Stat Assoc (2013) 1.01
A case study on choosing normalization methods and test statistics for two-channel microarray data. Comp Funct Genomics (2004) 1.01
Prevalence and genetic characterization of Cryptosporidium, Enterocytozoon, Giardia and Cyclospora in diarrheal outpatients in China. BMC Infect Dis (2014) 1.01
Analysis by cDNA microarrays of altered gene expression in middle ears of rats following pneumococcal infection. Int J Pediatr Otorhinolaryngol (2002) 1.01
Improved detection of differentially expressed genes through incorporation of gene locations. Biometrics (2009) 1.00
Penalized model-based clustering with unconstrained covariance matrices. Electron J Stat (2009) 0.99
Efficient synthesis of highly substituted Pyrrolin-4-ones via PIFA-mediated cyclization reactions of enaminones. Org Lett (2007) 0.99
Obesity is associated with increased morbidity after coronary artery bypass graft surgery in patients with renal insufficiency. J Thorac Cardiovasc Surg (2009) 0.99
Network-based genomic discovery: application and comparison of Markov random field models. J R Stat Soc Ser C Appl Stat (2010) 0.98
In vivo and in vitro patterns of the activity of simocyclinone D8, an angucyclinone antibiotic from Streptomyces antibioticus. Antimicrob Agents Chemother (2009) 0.98
Sensitivity enhancement of strain sensing utilizing a differential pair of fiber Bragg gratings. Sensors (Basel) (2012) 0.97
Genetic endothelial systems biology of sickle stroke risk. Blood (2007) 0.97
Layer-by-layer thinning of MoS2 by plasma. ACS Nano (2013) 0.97
A multicolor nanoprobe for detection and imaging of tumor-related mRNAs in living cells. Angew Chem Int Ed Engl (2012) 0.97
Supplementation of milk formula with galacto-oligosaccharides improves intestinal micro-flora and fermentation in term infants. Chin Med J (Engl) (2004) 0.96
A randomized, controlled intervention of machine guarding and related safety programs in small metal-fabrication businesses. Public Health Rep (2009) 0.96
Functional interaction of phosphatase and tensin homologue (PTEN) with the E3 ligase NEDD4-1 during neuronal response to zinc. J Biol Chem (2010) 0.96
Operon information improves gene expression estimation for cDNA microarrays. BMC Genomics (2006) 0.96
Resveratrol prevents CsA inhibition of proliferation and osteoblastic differentiation of mouse bone marrow-derived mesenchymal stem cells through an ER/NO/cGMP pathway. Toxicol In Vitro (2006) 0.95
Minocycline protects melanocytes against H2O2-induced cell death via JNK and p38 MAPK pathways. Int J Mol Med (2008) 0.95
Calcium-regulated phosphorylation of soybean serine acetyltransferase in response to oxidative stress. J Biol Chem (2006) 0.94
Simultaneous supervised clustering and feature selection over a graph. Biometrika (2012) 0.94
Thymineless death is associated with loss of essential genetic information from the replication origin. Mol Microbiol (2010) 0.94
RecA can stimulate the relaxation activity of topoisomerase I: Molecular basis of topoisomerase-mediated genome-wide transcriptional responses in Escherichia coli. Nucleic Acids Res (2006) 0.94
Can group interventions facilitate forgiveness of an ex-spouse? A randomized clinical trial. J Consult Clin Psychol (2005) 0.93
Discovery of a potent benzoxaborole-based anti-pneumococcal agent targeting leucyl-tRNA synthetase. Sci Rep (2013) 0.93
Effectiveness of a worksite intervention to reduce an occupational exposure: the Minnesota wood dust study. Am J Public Health (2002) 0.93
Left atrial dissection after left ventricular aneurysm repair. Echocardiography (2012) 0.93
Machine safety evaluation in small metal working facilities: an evaluation of inter-rater reliability in the quantification of machine-related hazards. Am J Ind Med (2005) 0.93
Sphingosine interaction with acidic leucine-rich nuclear phosphoprotein-32A (ANP32A) regulates PP2A activity and cyclooxygenase (COX)-2 expression in human endothelial cells. J Biol Chem (2010) 0.92
Using weighted permutation scores to detect differential gene expression with microarray data. J Bioinform Comput Biol (2005) 0.92
Statistical significance analysis of longitudinal gene expression data. Bioinformatics (2003) 0.92
Profile of machine safety in small metal fabrication businesses. Am J Ind Med (2006) 0.92
Self-management practices of Chinese Americans with type 2 diabetes. Nurs Health Sci (2010) 0.91
Binomial mixture model-based association tests under genetic heterogeneity. Ann Hum Genet (2009) 0.91
Comparison of effects of simvastatin versus atorvastatin on oxidative stress in patients with coronary heart disease. Clin Cardiol (2010) 0.91
Effects of endostatin-vascular endothelial growth inhibitor chimeric recombinant adenoviruses on antiangiogenesis. World J Gastroenterol (2004) 0.90
Borrowing information from relevant microarray studies for sample classification using weighted partial least squares. Comput Biol Chem (2005) 0.90
An examination of the process of relapse prevention therapy designed to aid smoking cessation. Addict Behav (2003) 0.90
Powerful and Adaptive Testing for Multi-trait and Multi-SNP Associations with GWAS and Sequencing Data. Genetics (2016) 0.90
Moderate hypothermia during aortic arch surgery is associated with reduced risk of early mortality. J Thorac Cardiovasc Surg (2013) 0.89
Incorporating gene functions into regression analysis of DNA-protein binding data and gene expression data to construct transcriptional networks. IEEE/ACM Trans Comput Biol Bioinform (2008) 0.89
Nicotinamide attenuates aquaporin 3 overexpression induced by retinoic acid through inhibition of EGFR/ERK in cultured human skin keratinocytes. Int J Mol Med (2008) 0.89
Effect of R219K polymorphism of the ABCA1 gene on the lipid-lowering effect of pravastatin in Chinese patients with coronary heart disease. Clin Exp Pharmacol Physiol (2008) 0.88
Does it always help to adjust for misclassification of a binary outcome in logistic regression? Stat Med (2005) 0.88
Combining gene annotations and gene expression data in model-based clustering: weighted method. OMICS (2006) 0.88
Immune responses against SARS-coronavirus nucleocapsid protein induced by DNA vaccine. Virology (2005) 0.88
Limited functional conservation of a global regulator among related bacterial genera: Lrp in Escherichia, Proteus and Vibrio. BMC Microbiol (2008) 0.88
The UDP-glucuronate decarboxylase gene family in Populus: structure, expression, and association genetics. PLoS One (2013) 0.88
Novel evolved immunoglobulin (Ig)-binding molecules enhance the detection of IgM against hepatitis C virus. PLoS One (2011) 0.88
Direct writing of half-meter long CNT based fiber for flexible electronics. Nano Lett (2015) 0.87
Device-associated infection rates, device use, length of stay, and mortality in intensive care units of 4 Chinese hospitals: International Nosocomial Control Consortium findings. Am J Infect Control (2012) 0.87
A Bayesian approach to joint modeling of protein-DNA binding, gene expression and sequence data. Stat Med (2010) 0.87