Published in J R Stat Soc Ser C Appl Stat on January 01, 2010
Variable selection for discriminant analysis with Markov random field priors for the analysis of microarray data. Bioinformatics (2010) 1.06
Incorporating predicted functions of nonsynonymous variants into gene-based analysis of exome sequencing data: a comparative study. BMC Proc (2011) 0.99
A BAYESIAN NONPARAMETRIC MIXTURE MODEL FOR SELECTING GENES AND GENE SUBNETWORKS. Ann Appl Stat (2014) 0.90
Bayesian Joint Modeling of Multiple Gene Networks and Diverse Genomic Data to Identify Target Genes of a Transcription Factor. Ann Appl Stat (2012) 0.86
An integrative framework for Bayesian variable selection with informative priors for identifying genes and pathways. PLoS One (2013) 0.83
Detecting subnetwork-level dynamic correlations. Bioinformatics (2016) 0.75
DM-BLD: differential methylation detection using a hierarchical Bayesian model exploiting local dependency. Bioinformatics (2016) 0.75
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet (2000) 336.52
Transcriptional regulatory networks in Saccharomyces cerevisiae. Science (2002) 43.52
Genome-wide location and function of DNA binding proteins. Science (2000) 31.25
Genome-wide map of nucleosome acetylation and methylation in yeast. Cell (2005) 15.08
A probabilistic functional network of yeast genes. Science (2004) 8.35
Detecting differential gene expression with a semiparametric hierarchical mixture method. Biostatistics (2004) 6.51
Protein networks in disease. Genome Res (2008) 5.65
A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments. Bioinformatics (2002) 4.73
GCN4 protein, a positive transcription factor in yeast, binds general control promoters at all 5' TGACTC 3' sequences. Proc Natl Acad Sci U S A (1986) 3.68
Gcn4p, a master regulator of gene expression, is controlled at multiple levels by diverse signals of starvation and stress. Eukaryot Cell (2002) 3.21
A Markov random field model for network-based analysis of genomic data. Bioinformatics (2007) 2.93
A simple implementation of a normal mixture approach to differential gene expression in multiclass microarrays. Bioinformatics (2006) 2.15
Detection of gene copy number changes in CGH microarrays using a spatially correlated mixture model. Bioinformatics (2006) 2.08
Integrated assessment and prediction of transcription factor binding. PLoS Comput Biol (2006) 2.04
Comparison of human protein-protein interaction maps. Bioinformatics (2007) 1.79
Incorporating gene networks into statistical tests for genomic data via a spatially correlated mixture model. Bioinformatics (2007) 1.60
MMG: a probabilistic tool to identify submodules of metabolic pathways. Bioinformatics (2008) 1.01
Computer analysis of the entire budding yeast genome for putative targets of the GCN4 transcription factor. Curr Genet (1998) 0.99
GCN4p activation of the yeast TRP3 gene is enhanced by ABF1p and uses a suboptimal TATA element. J Biol Chem (1994) 0.92
A data-adaptive sum test for disease association with multiple common or rare variants. Hum Hered (2010) 5.95
Comparison of statistical tests for disease association with rare variants. Genet Epidemiol (2011) 3.42
1,25-dihydroxyvitamin D3 suppresses renin gene transcription by blocking the activity of the cyclic AMP response element in the renin gene promoter. J Biol Chem (2007) 2.61
A note on using permutation-based false discovery rate estimates to compare different analysis methods for microarray data. Bioinformatics (2005) 2.31
Likelihood-based selection and sharp parameter estimation. J Am Stat Assoc (2012) 2.21
The Research Diagnostic Criteria for Temporomandibular Disorders. V: methods used to establish and validate revised Axis I diagnostic algorithms. J Orofac Pain (2010) 2.00
Linear regression and two-class classification with gene expression data. Bioinformatics (2003) 1.85
A comparative study of discriminating human heart failure etiology using gene expression profiles. BMC Bioinformatics (2005) 1.85
Penalized model-based clustering with cluster-specific diagonal covariance matrices and grouped variables. Electron J Stat (2008) 1.76
Excerpts from the United States Renal Data System 2003 Annual Data Report: atlas of end-stage renal disease in the United States. Am J Kidney Dis (2003) 1.70
Time-critical social mobilization. Science (2011) 1.65
Incorporating gene networks into statistical tests for genomic data via a spatially correlated mixture model. Bioinformatics (2007) 1.60
Subclinical changes in serum creatinine and mortality after coronary artery bypass grafting. J Thorac Cardiovasc Surg (2011) 1.60
Myc-ARF (alternate reading frame) interaction inhibits the functions of Myc. J Biol Chem (2004) 1.58
Network-based support vector machine for classification of microarray samples. BMC Bioinformatics (2009) 1.49
Preoperative statin therapy decreases risk of postoperative renal insufficiency. Cardiovasc Ther (2010) 1.47
Identification of genes responsible for osteoblast differentiation from human mesodermal progenitor cells. Proc Natl Acad Sci U S A (2003) 1.40
Molecular epidemiology of avian leukosis virus subgroup J in layer flocks in China. J Clin Microbiol (2012) 1.33
Multi-target drugs: the trend of drug research and development. PLoS One (2012) 1.28
Avian leukosis virus subgroup J in layer chickens, China. Emerg Infect Dis (2010) 1.27
Methods for Estimating and Interpreting Provider-Specific Standardized Mortality Ratios. Health Serv Outcomes Res Methodol (2003) 1.24
Incorporating biological knowledge into distance-based clustering analysis of microarray gene expression data. Bioinformatics (2006) 1.23
Variable selection in penalized model-based clustering via regularization on grouped parameters. Biometrics (2007) 1.23
Modified nonparametric approaches to detecting differentially expressed genes in replicated microarray experiments. Bioinformatics (2003) 1.21
ApoA-I structure on discs and spheres. Variable helix registry and conformational states. J Biol Chem (2002) 1.20
Small-sample performance of the robust score test and its modifications in generalized estimating equations. Stat Med (2005) 1.18
The Research Diagnostic Criteria for Temporomandibular Disorders. III: validity of Axis I diagnoses. J Orofac Pain (2010) 1.15
Modeling the relationship between LVAD support time and gene expression changes in the human heart by penalized partial least squares. Bioinformatics (2004) 1.14
Family protection and prevention of alcohol use among Hispanic youth at high risk. Am J Community Psychol (2005) 1.12
Factors influencing diabetes self-management in Chinese people with type 2 diabetes. Res Nurs Health (2008) 1.09
Incorporating prior knowledge of predictors into penalized classifiers with multiple penalty terms. Bioinformatics (2007) 1.09
Comparing three methods for variance estimation with duplicated high density oligonucleotide arrays. Funct Integr Genomics (2002) 1.09
A comparison of the perceptions and beliefs of workers and owners with regard to workplace safety in small metal fabrication businesses. Am J Ind Med (2007) 1.07
Powerful multi-marker association tests: unifying genomic distance-based regression and logistic regression. Genet Epidemiol (2010) 1.07
Left atrial dissection associated with pulmonary vein cannulation. Anesth Analg (2009) 1.06
A combination of Trastuzumab and 17-AAG induces enhanced ubiquitinylation and lysosomal pathway-dependent ErbB2 degradation and cytotoxicity in ErbB2-overexpressing breast cancer cells. Cancer Biol Ther (2008) 1.04
Incorporating prior knowledge of gene functional groups into regularized discriminant analysis of microarray data. Bioinformatics (2007) 1.04
Adjustment for population stratification via principal components in association analysis of rare variants. Genet Epidemiol (2012) 1.03
Persistence of the effect of the Lung Health Study (LHS) smoking intervention over eleven years. Prev Med (2002) 1.02
Gene function prediction by a combined analysis of gene expression data and protein-protein interaction data. J Bioinform Comput Biol (2005) 1.02
Polymorphic simple sequence repeat (SSR) loci within cellulose synthase (PtoCesA) genes are associated with growth and wood properties in Populus tomentosa. New Phytol (2012) 1.01
Imaging brain activity during natural vision using CASL perfusion fMRI. Hum Brain Mapp (2007) 1.01
Simultaneous grouping pursuit and feature selection over an undirected graph. J Am Stat Assoc (2013) 1.01
A case study on choosing normalization methods and test statistics for two-channel microarray data. Comp Funct Genomics (2004) 1.01
Prevalence and genetic characterization of Cryptosporidium, Enterocytozoon, Giardia and Cyclospora in diarrheal outpatients in China. BMC Infect Dis (2014) 1.01
Analysis by cDNA microarrays of altered gene expression in middle ears of rats following pneumococcal infection. Int J Pediatr Otorhinolaryngol (2002) 1.01
Penalized model-based clustering with unconstrained covariance matrices. Electron J Stat (2009) 0.99
Efficient synthesis of highly substituted Pyrrolin-4-ones via PIFA-mediated cyclization reactions of enaminones. Org Lett (2007) 0.99
Obesity is associated with increased morbidity after coronary artery bypass graft surgery in patients with renal insufficiency. J Thorac Cardiovasc Surg (2009) 0.99
Sensitivity enhancement of strain sensing utilizing a differential pair of fiber Bragg gratings. Sensors (Basel) (2012) 0.97
Genetic endothelial systems biology of sickle stroke risk. Blood (2007) 0.97
Layer-by-layer thinning of MoS2 by plasma. ACS Nano (2013) 0.97
A multicolor nanoprobe for detection and imaging of tumor-related mRNAs in living cells. Angew Chem Int Ed Engl (2012) 0.97
Supplementation of milk formula with galacto-oligosaccharides improves intestinal micro-flora and fermentation in term infants. Chin Med J (Engl) (2004) 0.96
Operon information improves gene expression estimation for cDNA microarrays. BMC Genomics (2006) 0.96
Functional interaction of phosphatase and tensin homologue (PTEN) with the E3 ligase NEDD4-1 during neuronal response to zinc. J Biol Chem (2010) 0.96
A randomized, controlled intervention of machine guarding and related safety programs in small metal-fabrication businesses. Public Health Rep (2009) 0.96
Resveratrol prevents CsA inhibition of proliferation and osteoblastic differentiation of mouse bone marrow-derived mesenchymal stem cells through an ER/NO/cGMP pathway. Toxicol In Vitro (2006) 0.95
Minocycline protects melanocytes against H2O2-induced cell death via JNK and p38 MAPK pathways. Int J Mol Med (2008) 0.95
Simultaneous supervised clustering and feature selection over a graph. Biometrika (2012) 0.94
Calcium-regulated phosphorylation of soybean serine acetyltransferase in response to oxidative stress. J Biol Chem (2006) 0.94
Discovery of a potent benzoxaborole-based anti-pneumococcal agent targeting leucyl-tRNA synthetase. Sci Rep (2013) 0.93
Machine safety evaluation in small metal working facilities: an evaluation of inter-rater reliability in the quantification of machine-related hazards. Am J Ind Med (2005) 0.93
Effectiveness of a worksite intervention to reduce an occupational exposure: the Minnesota wood dust study. Am J Public Health (2002) 0.93
Can group interventions facilitate forgiveness of an ex-spouse? A randomized clinical trial. J Consult Clin Psychol (2005) 0.93
Left atrial dissection after left ventricular aneurysm repair. Echocardiography (2012) 0.93
Sphingosine interaction with acidic leucine-rich nuclear phosphoprotein-32A (ANP32A) regulates PP2A activity and cyclooxygenase (COX)-2 expression in human endothelial cells. J Biol Chem (2010) 0.92
Profile of machine safety in small metal fabrication businesses. Am J Ind Med (2006) 0.92
Statistical significance analysis of longitudinal gene expression data. Bioinformatics (2003) 0.92
Using weighted permutation scores to detect differential gene expression with microarray data. J Bioinform Comput Biol (2005) 0.92
Comparison of effects of simvastatin versus atorvastatin on oxidative stress in patients with coronary heart disease. Clin Cardiol (2010) 0.91
Self-management practices of Chinese Americans with type 2 diabetes. Nurs Health Sci (2010) 0.91
Binomial mixture model-based association tests under genetic heterogeneity. Ann Hum Genet (2009) 0.91
Effects of endostatin-vascular endothelial growth inhibitor chimeric recombinant adenoviruses on antiangiogenesis. World J Gastroenterol (2004) 0.90
Borrowing information from relevant microarray studies for sample classification using weighted partial least squares. Comput Biol Chem (2005) 0.90
An examination of the process of relapse prevention therapy designed to aid smoking cessation. Addict Behav (2003) 0.90
Powerful and Adaptive Testing for Multi-trait and Multi-SNP Associations with GWAS and Sequencing Data. Genetics (2016) 0.90
Moderate hypothermia during aortic arch surgery is associated with reduced risk of early mortality. J Thorac Cardiovasc Surg (2013) 0.89
Incorporating gene functions into regression analysis of DNA-protein binding data and gene expression data to construct transcriptional networks. IEEE/ACM Trans Comput Biol Bioinform (2008) 0.89
Nicotinamide attenuates aquaporin 3 overexpression induced by retinoic acid through inhibition of EGFR/ERK in cultured human skin keratinocytes. Int J Mol Med (2008) 0.89
Effect of R219K polymorphism of the ABCA1 gene on the lipid-lowering effect of pravastatin in Chinese patients with coronary heart disease. Clin Exp Pharmacol Physiol (2008) 0.88
Does it always help to adjust for misclassification of a binary outcome in logistic regression? Stat Med (2005) 0.88
Immune responses against SARS-coronavirus nucleocapsid protein induced by DNA vaccine. Virology (2005) 0.88
Combining gene annotations and gene expression data in model-based clustering: weighted method. OMICS (2006) 0.88
The UDP-glucuronate decarboxylase gene family in Populus: structure, expression, and association genetics. PLoS One (2013) 0.88
Novel evolved immunoglobulin (Ig)-binding molecules enhance the detection of IgM against hepatitis C virus. PLoS One (2011) 0.88
Direct writing of half-meter long CNT based fiber for flexible electronics. Nano Lett (2015) 0.87
A Bayesian approach to joint modeling of protein-DNA binding, gene expression and sequence data. Stat Med (2010) 0.87
Device-associated infection rates, device use, length of stay, and mortality in intensive care units of 4 Chinese hospitals: International Nosocomial Control Consortium findings. Am J Infect Control (2012) 0.87
Alternate arrangement of PpL B3 domain and SpA D domain creates synergistic double-site binding to VH3 and Vkappa regions of fab. DNA Cell Biol (2008) 0.86
Bayesian Joint Modeling of Multiple Gene Networks and Diverse Genomic Data to Identify Target Genes of a Transcription Factor. Ann Appl Stat (2012) 0.86
Combined metabonomic and quantitative real-time PCR analyses reveal systems metabolic changes in Jurkat T-cells treated with HIV-1 Tat protein. J Proteome Res (2012) 0.86
A practical question based on cross-platform microarray data normalization: are BOEC more like large vessel or microvascular endothelial cells or neither of them? J Bioinform Comput Biol (2007) 0.86
Splenic stromal microenvironment negatively regulates virus-activated plasmacytoid dendritic cells through TGF-beta. J Immunol (2008) 0.86
Diabetes Learning in Virtual Environments: Testing the Efficacy of Self-Management Training and Support in Virtual Environments (Randomized Controlled Trial Protocol). Nurs Res (2015) 0.86
Development and application of microsatellites in candidate genes related to wood properties in the Chinese white poplar (Populus tomentosa Carr.). DNA Res (2012) 0.85
Multilocus association testing with penalized regression. Genet Epidemiol (2011) 0.85
Associations between interleukin-1 gene polymorphisms and sepsis risk: a meta-analysis. BMC Med Genet (2014) 0.85
Organizational characteristics of small metal-fabricating businesses in Minnesota. Int J Occup Environ Health (2007) 0.85
A plasmonic splitter based on slot cavity. Opt Express (2011) 0.85