Published in J Proteome Res on October 10, 2005
Protein analysis by shotgun/bottom-up proteomics. Chem Rev (2013) 2.13
Combined top-down and bottom-up proteomics identifies a phosphorylation site in stem-loop-binding proteins that contributes to high-affinity RNA binding. Proc Natl Acad Sci U S A (2006) 1.20
PTPepsilon has a critical role in signaling transduction pathways and phosphoprotein network topology in red cells. Proteomics (2008) 0.96
Mass spectrometric identification of in vivo phosphorylation sites of differentially expressed proteins in elongating cotton fiber cells. PLoS One (2013) 0.81
Histone demethylation by a family of JmjC domain-containing proteins. Nature (2005) 10.36
Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma. Nat Biotechnol (2009) 9.67
Circular RNAs are abundant, conserved, and associated with ALU repeats. RNA (2012) 5.16
Phosphorylation of RNA polymerase II CTD regulates H3 methylation in yeast. Genes Dev (2003) 4.93
Multiple reaction monitoring-based, multiplexed, absolute quantitation of 45 proteins in human plasma. Mol Cell Proteomics (2009) 3.65
Degradation of histone mRNA requires oligouridylation followed by decapping and simultaneous degradation of the mRNA both 5' to 3' and 3' to 5'. Genes Dev (2008) 3.30
Adora2b-elicited Per2 stabilization promotes a HIF-dependent metabolic switch crucial for myocardial adaptation to ischemia. Nat Med (2012) 3.03
A human proteome detection and quantitation project. Mol Cell Proteomics (2009) 2.80
The polyadenylation factor CPSF-73 is involved in histone-pre-mRNA processing. Cell (2005) 2.37
Regulated degradation of replication-dependent histone mRNAs requires both ATR and Upf1. Nat Struct Mol Biol (2005) 2.34
The human proteome project: current state and future direction. Mol Cell Proteomics (2011) 2.34
A 3' exonuclease that specifically interacts with the 3' end of histone mRNA. Mol Cell (2003) 2.24
Formation of the 3' end of histone mRNA: getting closer to the end. Gene (2007) 2.07
The stem-loop binding protein is required for efficient translation of histone mRNA in vivo and in vitro. Mol Cell Biol (2002) 1.84
A unified phylogeny-based nomenclature for histone variants. Epigenetics Chromatin (2012) 1.82
Rare codons regulate KRas oncogenesis. Curr Biol (2012) 1.74
A genome-wide RNA interference screen reveals that variant histones are necessary for replication-dependent histone pre-mRNA processing. Mol Cell (2007) 1.71
A CPSF-73 homologue is required for cell cycle progression but not cell growth and interacts with a protein having features of CPSF-100. Mol Cell Biol (2005) 1.65
Effect of antibiotic treatment on the intestinal metabolome. Antimicrob Agents Chemother (2011) 1.64
Crosslinking combined with mass spectrometry for structural proteomics. Mass Spectrom Rev (2010) 1.63
Phosphorylation of stem-loop binding protein (SLBP) on two threonines triggers degradation of SLBP, the sole cell cycle-regulated factor required for regulation of histone mRNA processing, at the end of S phase. Mol Cell Biol (2003) 1.61
Developmental control of histone mRNA and dSLBP synthesis during Drosophila embryogenesis and the role of dSLBP in histone mRNA 3' end processing in vivo. Mol Cell Biol (2002) 1.59
A quantitative study of the effects of chaotropic agents, surfactants, and solvents on the digestion efficiency of human plasma proteins by trypsin. J Proteome Res (2010) 1.58
A novel zinc finger protein is associated with U7 snRNP and interacts with the stem-loop binding protein in the histone pre-mRNP to stimulate 3'-end processing. Genes Dev (2002) 1.49
FLASH, a proapoptotic protein involved in activation of caspase-8, is essential for 3' end processing of histone pre-mRNAs. Mol Cell (2009) 1.49
The histone 3'-terminal stem-loop-binding protein enhances translation through a functional and physical interaction with eukaryotic initiation factor 4G (eIF4G) and eIF3. Mol Cell Biol (2002) 1.48
A systems-biology analysis of feedback inhibition in the Sho1 osmotic-stress-response pathway. Curr Biol (2007) 1.47
HIF1A reduces acute lung injury by optimizing carbohydrate metabolism in the alveolar epithelium. PLoS Biol (2013) 1.45
Staged assembly of histone gene expression machinery at subnuclear foci in the abbreviated cell cycle of human embryonic stem cells. Proc Natl Acad Sci U S A (2008) 1.41
Knockdown of SLBP results in nuclear retention of histone mRNA. RNA (2009) 1.36
MRM-based multiplexed quantitation of 67 putative cardiovascular disease biomarkers in human plasma. Proteomics (2012) 1.35
A core complex of CPSF73, CPSF100, and Symplekin may form two different cleavage factors for processing of poly(A) and histone mRNAs. Mol Cell (2009) 1.35
Hydrogen/deuterium exchange mass spectrometry with top-down electron capture dissociation for characterizing structural transitions of a 17 kDa protein. J Am Chem Soc (2009) 1.35
Characterization of 3'hExo, a 3' exonuclease specifically interacting with the 3' end of histone mRNA. J Biol Chem (2006) 1.33
SLIP1, a factor required for activation of histone mRNA translation by the stem-loop binding protein. Mol Cell Biol (2007) 1.33
An isotopically coded CID-cleavable biotinylated cross-linker for structural proteomics. Mol Cell Proteomics (2010) 1.31
Translation termination is involved in histone mRNA degradation when DNA replication is inhibited. Mol Cell Biol (2005) 1.30
Developmental and cell cycle regulation of the Drosophila histone locus body. Mol Biol Cell (2007) 1.30
Isotopically coded cleavable cross-linker for studying protein-protein interaction and protein complexes. Mol Cell Proteomics (2005) 1.29
Direct interaction with filamins modulates the stability and plasma membrane expression of CFTR. J Clin Invest (2007) 1.29
Nuclear autoantigenic sperm protein (NASP), a linker histone chaperone that is required for cell proliferation. J Biol Chem (2006) 1.28
Phosphorylation of threonine 61 by cyclin a/Cdk1 triggers degradation of stem-loop binding protein at the end of S phase. Mol Cell Biol (2008) 1.27
Drosophila histone locus bodies form by hierarchical recruitment of components. J Cell Biol (2011) 1.25
Nuclear import of the stem-loop binding protein and localization during the cell cycle. Mol Biol Cell (2005) 1.25
Electron capture dissociation of electrosprayed protein ions for spatially resolved hydrogen exchange measurements. J Am Chem Soc (2008) 1.25
Genome-wide analysis of mRNAs bound to the histone stem-loop binding protein. RNA (2006) 1.25
Mnd2 and Swm1 are core subunits of the Saccharomyces cerevisiae anaphase-promoting complex. J Biol Chem (2003) 1.24
U7 snRNA mutations in Drosophila block histone pre-mRNA processing and disrupt oogenesis. RNA (2006) 1.20
Combined top-down and bottom-up proteomics identifies a phosphorylation site in stem-loop-binding proteins that contributes to high-affinity RNA binding. Proc Natl Acad Sci U S A (2006) 1.20
BiPS, a photocleavable, isotopically coded, fluorescent cross-linker for structural proteomics. Mol Cell Proteomics (2008) 1.17
Discovery of a small-molecule HIV-1 integrase inhibitor-binding site. Proc Natl Acad Sci U S A (2006) 1.16
SLBP is associated with histone mRNA on polyribosomes as a component of the histone mRNP. Nucleic Acids Res (2004) 1.16
Drosophila stem-loop binding protein intracellular localization is mediated by phosphorylation and is required for cell cycle-regulated histone mRNA expression. Mol Biol Cell (2004) 1.15
ICC-CLASS: isotopically-coded cleavable crosslinking analysis software suite. BMC Bioinformatics (2010) 1.14
Proteomic signatures in plasma during early acute renal allograft rejection. Mol Cell Proteomics (2010) 1.14
A subset of Drosophila integrator proteins is essential for efficient U7 snRNA and spliceosomal snRNA 3'-end formation. Mol Cell Biol (2010) 1.13
Towards high-throughput metabolomics using ultrahigh-field Fourier transform ion cyclotron resonance mass spectrometry. Metabolomics (2008) 1.12
Impact of salmonella infection on host hormone metabolism revealed by metabolomics. Infect Immun (2011) 1.12
A Golgi-localized hexose transporter is involved in heterotrimeric G protein-mediated early development in Arabidopsis. Mol Biol Cell (2006) 1.11
Phosphorylation of paxillin by p38MAPK is involved in the neurite extension of PC-12 cells. J Cell Biol (2004) 1.11
3' end processing of Drosophila melanogaster histone pre-mRNAs: requirement for phosphorylated Drosophila stem-loop binding protein and coevolution of the histone pre-mRNA processing system. Mol Cell Biol (2002) 1.10
Systematic reconstruction of RNA functional motifs with high-throughput microfluidics. Nat Methods (2012) 1.09
The first pilot project of the consortium for top-down proteomics: a status report. Proteomics (2014) 1.08
Development of an immuno tandem mass spectrometry (iMALDI) assay for EGFR diagnosis. Proteomics Clin Appl (2007) 1.08
Recognition and activation of Rho GTPases by Vav1 and Vav2 guanine nucleotide exchange factors. Biochemistry (2005) 1.08
ZFP100, a component of the active U7 snRNP limiting for histone pre-mRNA processing, is required for entry into S phase. Mol Cell Biol (2006) 1.07
A comparison of MS/MS-based, stable-isotope-labeled, quantitation performance on ESI-quadrupole TOF and MALDI-TOF/TOF mass spectrometers. Proteomics (2009) 1.07
Structure of histone mRNA stem-loop, human stem-loop binding protein, and 3'hExo ternary complex. Science (2013) 1.07
Mass-spectrometry-based clinical proteomics--a review and prospective. Analyst (2010) 1.06
Nuclear export of metazoan replication-dependent histone mRNAs is dependent on RNA length and is mediated by TAP. RNA (2005) 1.06
Comment on "Profiling oil sands mixtures from industrial developments and natural groundwaters for source identification". Environ Sci Technol (2014) 1.06
Studies of the 5' exonuclease and endonuclease activities of CPSF-73 in histone pre-mRNA processing. Mol Cell Biol (2008) 1.06
Cloning and characterization of the Drosophila U7 small nuclear RNA. Proc Natl Acad Sci U S A (2003) 1.06
An immunoaffinity tandem mass spectrometry (iMALDI) assay for detection of Francisella tularensis. Anal Chim Acta (2007) 1.03
Towards the development of an immuno MALDI (iMALDI) mass spectrometry assay for the diagnosis of hypertension. J Am Soc Mass Spectrom (2010) 1.03
MeCP2 binds to nucleosome free (linker DNA) regions and to H3K9/H3K27 methylated nucleosomes in the brain. Nucleic Acids Res (2011) 1.03
Multi-kinase phosphorylation of the APC/C activator Cdh1 revealed by mass spectrometry. Cell Cycle (2004) 1.03
Inhibition of APCCdh1 activity by Cdh1/Acm1/Bmh1 ternary complex formation. J Biol Chem (2006) 1.02
A complex containing the CPSF73 endonuclease and other polyadenylation factors associates with U7 snRNP and is recruited to histone pre-mRNA for 3'-end processing. Mol Cell Biol (2012) 1.01
Identification of two small regulatory RNAs linked to virulence in Brucella abortus 2308. Mol Microbiol (2012) 1.01
Design, implementation and multisite evaluation of a system suitability protocol for the quantitative assessment of instrument performance in liquid chromatography-multiple reaction monitoring-MS (LC-MRM-MS). Mol Cell Proteomics (2013) 1.01
Identification of components of protein complexes. Methods Mol Biol (2005) 1.01
Photoaffinity labeling combined with mass spectrometric approaches as a tool for structural proteomics. Expert Rev Proteomics (2006) 1.00
Multiplexed quantification of 63 proteins in human urine by multiple reaction monitoring-based mass spectrometry for discovery of potential bladder cancer biomarkers. J Proteomics (2012) 0.99
Electrospray ionization tandem mass spectrometry of model peptides reveals diagnostic fragment ions for protein ubiquitination. Rapid Commun Mass Spectrom (2005) 0.98
Model of the Mediator middle module based on protein cross-linking. Nucleic Acids Res (2013) 0.98
The effect of pre-analytical variability on the measurement of MRM-MS-based mid- to high-abundance plasma protein biomarkers and a panel of cytokines. PLoS One (2012) 0.98
An RNAi screen identifies additional members of the Drosophila Integrator complex and a requirement for cyclin C/Cdk8 in snRNA 3'-end formation. RNA (2012) 0.98
mRNAs containing the histone 3' stem-loop are degraded primarily by decapping mediated by oligouridylation of the 3' end. RNA (2012) 0.98
Characterizing short-lived protein folding intermediates by top-down hydrogen exchange mass spectrometry. Anal Chem (2010) 0.98
Interaction of the histone mRNA hairpin with stem-loop binding protein (SLBP) and regulation of the SLBP-RNA complex by phosphorylation and proline isomerization. Biochemistry (2012) 0.98