Published in Bioinformatics on October 18, 2005
Supervised group Lasso with applications to microarray data analysis. BMC Bioinformatics (2007) 1.99
Regularized gene selection in cancer microarray meta-analysis. BMC Bioinformatics (2009) 1.64
Penalized feature selection and classification in bioinformatics. Brief Bioinform (2008) 1.51
Combining knowledge and data driven insights for identifying risk factors using electronic health records. AMIA Annu Symp Proc (2012) 1.46
Empirical study of supervised gene screening. BMC Bioinformatics (2006) 1.21
Incorporating gene co-expression network in identification of cancer prognosis markers. BMC Bioinformatics (2010) 1.20
Identification of genes associated with multiple cancers via integrative analysis. BMC Genomics (2009) 1.12
A boosting method for maximizing the partial area under the ROC curve. BMC Bioinformatics (2010) 1.07
Regularized binormal ROC method in disease classification using microarray data. BMC Bioinformatics (2006) 1.03
Identification of non-Hodgkin's lymphoma prognosis signatures using the CTGDR method. Bioinformatics (2009) 1.01
Multiplex immunoassay for Lyme disease using VlsE1-IgG and pepC10-IgM antibodies: improving test performance through bioinformatics. Clin Vaccine Immunol (2011) 0.97
Prediction-based structured variable selection through the receiver operating characteristic curves. Biometrics (2010) 0.96
Top scoring pairs for feature selection in machine learning and applications to cancer outcome prediction. BMC Bioinformatics (2011) 0.91
Incorporating higher-order representative features improves prediction in network-based cancer prognosis analysis. BMC Med Genomics (2011) 0.90
Integrative analysis using module-guided random forests reveals correlated genetic factors related to mouse weight. PLoS Comput Biol (2013) 0.89
A penalized robust method for identifying gene-environment interactions. Genet Epidemiol (2014) 0.88
Multi-TGDR: a regularization method for multi-class classification in microarray experiments. PLoS One (2013) 0.88
Biomarker selection for medical diagnosis using the partial area under the ROC curve. BMC Res Notes (2014) 0.85
Nonparametric receiver operating characteristic-based evaluation for survival outcomes. Stat Med (2012) 0.84
AUC-based biomarker ensemble with an application on gene scores predicting low bone mineral density. Bioinformatics (2011) 0.84
On the analysis of glycomics mass spectrometry data via the regularized area under the ROC curve. BMC Bioinformatics (2007) 0.84
Boosting the concordance index for survival data--a unified framework to derive and evaluate biomarker combinations. PLoS One (2014) 0.83
Multi-TGDR, a multi-class regularization method, identifies the metabolic profiles of hepatocellular carcinoma and cirrhosis infected with hepatitis B or hepatitis C virus. BMC Bioinformatics (2014) 0.82
Visualization-aided classification ensembles discriminate lung adenocarcinoma and squamous cell carcinoma samples using their gene expression profiles. PLoS One (2014) 0.82
Identification of Subtype-Specific Prognostic Genes for Early-Stage Lung Adenocarcinoma and Squamous Cell Carcinoma Patients Using an Embedded Feature Selection Algorithm. PLoS One (2015) 0.80
Combining clinical and genomic covariates via Cov-TGDR. Cancer Inform (2007) 0.80
AucPR: an AUC-based approach using penalized regression for disease prediction with high-dimensional omics data. BMC Genomics (2014) 0.75
Locality sensitivity discriminant analysis-based feature ranking of human emotion actions recognition. J Phys Ther Sci (2015) 0.75
AVC: Selecting discriminative features on basis of AUC by maximizing variable complementarity. BMC Bioinformatics (2017) 0.75
Boosting the discriminatory power of sparse survival models via optimization of the concordance index and stability selection. BMC Bioinformatics (2016) 0.75
Biomarker discovery using statistically significant gene sets. J Comput Biol (2011) 0.75
Assessment of a disease screener by hierarchical all-subset selection using area under the receiver operating characteristic curves. Stat Med (2011) 0.75
Intrinsic resistance of tumorigenic breast cancer cells to chemotherapy. J Natl Cancer Inst (2008) 11.93
COORDINATE DESCENT ALGORITHMS FOR NONCONVEX PENALIZED REGRESSION, WITH APPLICATIONS TO BIOLOGICAL FEATURE SELECTION. Ann Appl Stat (2011) 4.18
Homozygosity mapping with SNP arrays identifies TRIM32, an E3 ubiquitin ligase, as a Bardet-Biedl syndrome gene (BBS11). Proc Natl Acad Sci U S A (2006) 4.16
Activation of multiple proto-oncogenic tyrosine kinases in breast cancer via loss of the PTPN12 phosphatase. Cell (2011) 3.27
Loss of phosphatase and tensin homolog or phosphoinositol-3 kinase activation and response to trastuzumab or lapatinib in human epidermal growth factor receptor 2-overexpressing locally advanced breast cancers. J Clin Oncol (2010) 2.93
Regulation of gene expression in the mammalian eye and its relevance to eye disease. Proc Natl Acad Sci U S A (2006) 2.91
The histone mark H3K36me3 regulates human DNA mismatch repair through its interaction with MutSα. Cell (2013) 2.87
A renewable tissue resource of phenotypically stable, biologically and ethnically diverse, patient-derived human breast cancer xenograft models. Cancer Res (2013) 2.63
Distinct roles for the RSC and Swi/Snf ATP-dependent chromatin remodelers in DNA double-strand break repair. Genes Dev (2005) 2.47
MATS: a Bayesian framework for flexible detection of differential alternative splicing from RNA-Seq data. Nucleic Acids Res (2012) 2.09
Supervised group Lasso with applications to microarray data analysis. BMC Bioinformatics (2007) 1.99
Soybean WRKY-type transcription factor genes, GmWRKY13, GmWRKY21, and GmWRKY54, confer differential tolerance to abiotic stresses in transgenic Arabidopsis plants. Plant Biotechnol J (2008) 1.98
Clustering threshold gradient descent regularization: with applications to microarray studies. Bioinformatics (2006) 1.97
Laparoendoscopic single-site nephrectomy compared with conventional laparoscopic nephrectomy: a systematic review and meta-analysis of comparative studies. Eur Urol (2012) 1.96
Epigenetic modification induced by hepatitis B virus X protein via interaction with de novo DNA methyltransferase DNMT3A. J Hepatol (2008) 1.95
An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge. Genome Biol (2014) 1.95
Real-time evaluation of myosin light chain kinase activation in smooth muscle tissues from a transgenic calmodulin-biosensor mouse. Proc Natl Acad Sci U S A (2004) 1.88
Choriocapillaris vascular dropout related to density of drusen in human eyes with early age-related macular degeneration. Invest Ophthalmol Vis Sci (2011) 1.85
Penalized methods for bi-level variable selection. Stat Interface (2009) 1.82
Toll-like receptors in inflammation, infection and cancer. Int Immunopharmacol (2007) 1.76
T cell factor 1 is required for group 2 innate lymphoid cell generation. Immunity (2013) 1.72
Combining multiple markers for classification using ROC. Biometrics (2007) 1.72
MicroRNA-125b suppresses the development of bladder cancer by targeting E2F3. Int J Cancer (2011) 1.70
Chemical ablation of the Purkinje system causes early termination and activation rate slowing of long-duration ventricular fibrillation in dogs. Am J Physiol Heart Circ Physiol (2008) 1.66
Regularized gene selection in cancer microarray meta-analysis. BMC Bioinformatics (2009) 1.64
Dietary intakes of mushrooms and green tea combine to reduce the risk of breast cancer in Chinese women. Int J Cancer (2009) 1.63
Wnt1-Cre-mediated deletion of AP-2alpha causes multiple neural crest-related defects. Dev Biol (2004) 1.62
Myosin light chain kinase and myosin phosphorylation effect frequency-dependent potentiation of skeletal muscle contraction. Proc Natl Acad Sci U S A (2005) 1.59
Definition of the landscape of promoter DNA hypomethylation in liver cancer. Cancer Res (2011) 1.58
MicroRNA-143 as a tumor suppressor for bladder cancer. J Urol (2009) 1.56
[Recent research progress of anti-tumor mechnism matrine]. Zhongguo Zhong Yao Za Zhi (2004) 1.55
The F-box protein AhSLF-S2 physically interacts with S-RNases that may be inhibited by the ubiquitin/26S proteasome pathway of protein degradation during compatible pollination in Antirrhinum. Plant Cell (2004) 1.54
A copper-catalyzed C-N bond formation involving sp-hybridized carbons. A direct entry to chiral ynamides via N-alkynylation of amides. J Am Chem Soc (2003) 1.51
Penalized feature selection and classification in bioinformatics. Brief Bioinform (2008) 1.51
The yeast RSC chromatin-remodeling complex is required for kinetochore function in chromosome segregation. Mol Cell Biol (2003) 1.50
Lanthanum enhances in vitro osteoblast differentiation via pertussis toxin-sensitive gi protein and ERK signaling pathway. J Cell Biochem (2008) 1.49
Identification of interleukin-6 promoter polymorphisms in the Chinese Han population and their functional significance. Crit Care Med (2008) 1.49
Characteristics and prognosis analysis of additional chromosome abnormalities in newly diagnosed acute promyelocytic leukemia treated with arsenic trioxide as the front-line therapy. Leuk Res (2013) 1.48
Interleukin-6 levels in female rats with protamine sulfate-induced chronic cystitis treated with hyaluronic acid. Int J Urol (2013) 1.45
Effects of procainamide and sotalol on restitution properties, dispersion of refractoriness, and ventricular fibrillation activation patterns in pigs. J Cardiovasc Electrophysiol (2008) 1.44
Identification of sequence variants in genetic disease-causing genes using targeted next-generation sequencing. PLoS One (2011) 1.44
A role of RIP3-mediated macrophage necrosis in atherosclerosis development. Cell Rep (2013) 1.44
Interleukin-6-independent expression of glucocorticoid receptor is upregulated by triptolide in multiple myeloma. Leuk Lymphoma (2009) 1.42
Clinical relevance of the TLR4 11367 polymorphism in patients with major trauma. Arch Surg (2009) 1.42
Cellular plasticity cascades in the pathophysiology and treatment of bipolar disorder. Neuropsychopharmacology (2007) 1.41
Additive risk survival model with microarray data. BMC Bioinformatics (2007) 1.40
Novel molecular and computational methods improve the accuracy of insertion site analysis in Sleeping Beauty-induced tumors. PLoS One (2011) 1.38
Cardiac myosin light chain kinase is necessary for myosin regulatory light chain phosphorylation and cardiac performance in vivo. J Biol Chem (2010) 1.37
Low-temperature processed electron collection layers of graphene/TiO2 nanocomposites in thin film perovskite solar cells. Nano Lett (2013) 1.36
A polymorphism in the complement component C1qA correlates with prolonged response following rituximab therapy of follicular lymphoma. Clin Cancer Res (2008) 1.36
Li Ion Conducting Polymer Gel Electrolytes Based on Ionic Liquid/PVDF-HFP Blends. J Electrochem Soc (2007) 1.36
lncRNA H19/miR-675 axis represses prostate cancer metastasis by targeting TGFBI. FEBS J (2014) 1.36
CCAAT/enhancer binding protein alpha interacts with ZTA and mediates ZTA-induced p21(CIP-1) accumulation and G(1) cell cycle arrest during the Epstein-Barr virus lytic cycle. J Virol (2003) 1.33
A semiparametric approach for the nonparametric transformation survival model with multiple covariates. Biostatistics (2006) 1.32
miRNA-27b targets vascular endothelial growth factor C to inhibit tumor progression and angiogenesis in colorectal cancer. PLoS One (2013) 1.31
Multi-stage analysis of gene expression and transcription regulation in C57/B6 mouse liver development. Genomics (2008) 1.31
Periods of highly synchronous, non-reentrant endocardial activation cycles occur during long-duration ventricular fibrillation. J Cardiovasc Electrophysiol (2010) 1.30
Axin2 controls bone remodeling through the beta-catenin-BMP signaling pathway in adult mice. J Cell Sci (2009) 1.29
The soybean Dof-type transcription factor genes, GmDof4 and GmDof11, enhance lipid content in the seeds of transgenic Arabidopsis plants. Plant J (2007) 1.29
Gene expression analysis of photoreceptor cell loss in bbs4-knockout mice reveals an early stress gene response and photoreceptor cell damage. Invest Ophthalmol Vis Sci (2007) 1.28
Integrative analysis of multiple cancer prognosis studies with gene expression measurements. Stat Med (2011) 1.27
Hepatitis B virus pre-S deletion mutations are a risk factor for hepatocellular carcinoma: a matched nested case-control study. J Gen Virol (2008) 1.26
A critical role for the g protein-coupled receptor mFPR2 in airway inflammation and immune responses. J Immunol (2010) 1.26
Fiberglass needle electrodes for transmural cardiac mapping. IEEE Trans Biomed Eng (2002) 1.26
Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis. Planta (2008) 1.25
B-chronic lymphocytic leukemia cells and other B cells can produce granzyme B and gain cytotoxic potential after interleukin-21-based activation. Blood (2006) 1.25
Mold damage in homes and wheezing in infants. Ann Allergy Asthma Immunol (2006) 1.24
The posterior probability of linkage allowing for linkage disequilibrium and a new estimate of disequilibrium between a trait and a marker. Hum Hered (2005) 1.24
Thioredoxin-like 2 regulates human cancer cell growth and metastasis via redox homeostasis and NF-κB signaling. J Clin Invest (2010) 1.22
Preferential expression of very late antigen-4 on type 1 CTL cells plays a critical role in trafficking into central nervous system tumors. Cancer Res (2007) 1.22
Myosin light chain kinase activation and calcium sensitization in smooth muscle in vivo. Am J Physiol Cell Physiol (2008) 1.20
Glycogen synthase kinase-3 is essential for β-arrestin-2 complex formation and lithium-sensitive behaviors in mice. J Clin Invest (2011) 1.20
Two-locus heterogeneity cannot be distinguished from two-locus epistasis on the basis of affected-sib-pair data. Am J Hum Genet (2003) 1.20
The transmural activation sequence in porcine and canine left ventricle is markedly different during long-duration ventricular fibrillation. J Cardiovasc Electrophysiol (2007) 1.20
Intramural foci during long duration fibrillation in the pig ventricle. Circ Res (2008) 1.20
Stereoselective intramolecular [4 + 3] cycloadditions of nitrogen-stabilized chiral oxyallyl cations via epoxidation of N-tethered allenamides. J Am Chem Soc (2003) 1.20
Integrative analysis and variable selection with multiple high-dimensional data sets. Biostatistics (2011) 1.19
linc-UBC1 physically associates with polycomb repressive complex 2 (PRC2) and acts as a negative prognostic factor for lymph node metastasis and survival in bladder cancer. Biochim Biophys Acta (2013) 1.19
Intratumoral delivery of dendritic cells engineered to secrete both interleukin (IL)-12 and IL-18 effectively treats local and distant disease in association with broadly reactive Tc1-type immunity. Cancer Res (2003) 1.18
Clinical characteristics of T-cell lymphoma associated with hemophagocytic syndrome: comparison of T-cell lymphoma with and without hemophagocytic syndrome. Leuk Lymphoma (2008) 1.16
Prognostic significance of circulating tumor cells in non-small-cell lung cancer patients: a meta-analysis. PLoS One (2013) 1.15
Regulation of expression of the Epstein-Barr virus BamHI-A rightward transcripts. J Virol (2005) 1.14
Tumor necrosis factor inhibits mesenchymal stem cell differentiation into osteoblasts via the ubiquitin E3 ligase Wwp1. Stem Cells (2011) 1.14
Identification of genes associated with multiple cancers via integrative analysis. BMC Genomics (2009) 1.12
Regional differences in ventricular fibrillation in the open-chest porcine left ventricle. Circ Res (2002) 1.12
Highly stereoselective [4 + 3] cycloadditions of nitrogen-stabilized oxyallyl cations with pyrroles: an approach to parvineostemonine. Org Lett (2007) 1.11
Salivary microRNAs as promising biomarkers for detection of esophageal cancer. PLoS One (2013) 1.10
Rare, nonsynonymous variant in the smooth muscle-specific isoform of myosin heavy chain, MYH11, R247C, alters force generation in the aorta and phenotype of smooth muscle cells. Circ Res (2012) 1.10
β-catenin overexpression in the nucleus predicts progress disease and unfavourable survival in colorectal cancer: a meta-analysis. PLoS One (2013) 1.10
Compartmentalized Ras proteins transform NIH 3T3 cells with different efficiencies. Mol Cell Biol (2010) 1.10
The role of floral organs in carpels, an Arabidopsis loss-of-function mutation in MicroRNA160a, in organogenesis and the mechanism regulating its expression. Plant J (2010) 1.10
Genetic alterations in the PI3K pathway in prostate cancer. Anticancer Res (2009) 1.09
Sp1 and Sp3 regulate basal transcription of the survivin gene. Biochem Biophys Res Commun (2007) 1.09
CFTR DeltaF508 mutation has minimal effect on the gene expression profile of differentiated human airway epithelia. Am J Physiol Lung Cell Mol Physiol (2005) 1.09
Reversible posterior encephalopathy syndrome in systemic lupus erythematosus and lupus nephritis. Intern Med (2008) 1.09
Copper(II)-catalyzed amidations of alkynyl bromides as a general synthesis of ynamides and Z-enamides. An intramolecular amidation for the synthesis of macrocyclic ynamides. J Org Chem (2006) 1.09
Matrine induced gastric cancer MKN45 cells apoptosis via increasing pro-apoptotic molecules of Bcl-2 family. Toxicology (2006) 1.08
Prognostic role of CD133 expression in colorectal cancer: a meta-analysis. BMC Cancer (2012) 1.08
TAp63alpha induces AP-2gamma as an early event in epidermal morphogenesis. Dev Biol (2005) 1.08