Published in Nucleic Acids Res on October 19, 2005
Molecular dynamics simulations of RNA: an in silico single molecule approach. Biopolymers (2007) 1.41
Pyrene-functionalized oligonucleotides and locked nucleic acids (LNAs): tools for fundamental research, diagnostics, and nanotechnology. Chem Soc Rev (2011) 1.04
Functionalized 2'-amino-alpha-L-LNA: directed positioning of intercalators for DNA targeting. J Org Chem (2009) 0.93
Identification and characterization of second-generation invader locked nucleic acids (LNAs) for mixed-sequence recognition of double-stranded DNA. J Org Chem (2013) 0.91
High-affinity DNA targeting using readily accessible mimics of N2'-functionalized 2'-amino-α-L-LNA. J Org Chem (2011) 0.90
Invaders: Recognition of Double-Stranded DNA by Using Duplexes Modified with Interstrand Zippers of 2'-O-(Pyren-1-yl)methyl-ribonucleotides. Chembiochem (2013) 0.87
Recognition of mixed-sequence DNA duplexes: design guidelines for invaders based on 2'-O-(pyren-1-yl)methyl-RNA monomers. J Org Chem (2013) 0.84
Silver clusters as both chromophoric reporters and DNA ligands. Anal Chem (2013) 0.84
Sandwich assay for mixed-sequence recognition of double-stranded DNA: invader-based detection of targets specific to foodborne pathogens. Chem Commun (Camb) (2013) 0.83
Recognition of double-stranded DNA using energetically activated duplexes with interstrand zippers of 1-, 2- or 4-pyrenyl-functionalized O2'-alkylated RNA monomers. Org Biomol Chem (2014) 0.83
DNA strands with alternating incorporations of LNA and 2'-O-(pyren-1-yl)methyluridine: SNP-discriminating RNA detection probes. Chem Sci (2013) 0.79
Molecular fluorescence, phosphorescence, and chemiluminescence spectrometry. Anal Chem (2006) 0.78
Synthesis and characterization of oligodeoxyribonucleotides modified with 2'-amino-α-L-LNA adenine monomers: high-affinity targeting of single-stranded DNA. J Org Chem (2013) 0.78
A pyrenyl-PNA probe for DNA and RNA recognition: Fluorescence and UV absorption studies. Artif DNA PNA XNA (2010) 0.77
C2'-pyrene-functionalized triazole-linked DNA: universal DNA/RNA hybridization probes. J Org Chem (2011) 0.77
Synthesis and structural characterization of piperazino-modified DNA that favours hybridization towards DNA over RNA. Nucleic Acids Res (2010) 0.76
Synthesis and characterization of oligodeoxyribonucleotides modified with 2'-thio-2'-deoxy-2'-S-(pyren-1-yl)methyluridine. Bioorg Med Chem Lett (2015) 0.76
Merging Two Strategies for Mixed-Sequence Recognition of Double-Stranded DNA: Pseudocomplementary Invader Probes. J Org Chem (2016) 0.75
Noncovalent interactions of tiopronin-protected gold nanoparticles with DNA: two methods to quantify free energy of binding. ScientificWorldJournal (2014) 0.75
DFT and MD study of the divalent-cation-mediated interaction of ochratoxin A with DNA nucleosides. J Mol Model (2014) 0.75
Dynamics of ribozyme binding of substrate revealed by fluorescence-detected stopped-flow methods. Science (1992) 1.69
Probing DNA sequences in solution with a monomer-excimer fluorescence color change. Nucleic Acids Res (1998) 1.36
Unambiguous detection of target DNAs by excimer-monomer switching molecular beacons. J Org Chem (2004) 1.28
2'-Pyrene modified oligonucleotide provides a highly sensitive fluorescent probe of RNA. Nucleic Acids Res (1999) 1.16
Optimization of excimer-forming two-probe nucleic acid hybridization method with pyrene as a fluorophore. Nucleic Acids Res (1998) 1.07
RNA tertiary folding monitored by fluorescence of covalently attached pyrene. Biochemistry (1999) 1.07
Pyrene-labeled base-discriminating fluorescent DNA probes for homogeneous SNP typing. J Am Chem Soc (2004) 1.02
Synthesis and properties of an oligodeoxynucleotide modified with a pyrene derivative at the 5'-phosphate. Bioconjug Chem (1993) 1.00
Oligonucleotides with bis-pyrene adduct in the backbone: syntheses and properties of intramolecular excimer forming probe. Nucleic Acids Symp Ser (1991) 0.93
Bis-pyrene-labeled oligonucleotides: sequence specificity of excimer and monomer fluorescence changes upon hybridization with DNA. Bioconjug Chem (2002) 0.93
5'-bis-pyrenylated oligonucleotides displaying excimer fluorescence provide sensitive probes of RNA sequence and structure. Nucleic Acids Res (2001) 0.92
DNA mismatch detection using a pyrene-excimer-forming probe. Chem Commun (Camb) (2005) 0.92
Pyrene-labeled oligodeoxynucleotide probe for detecting base insertion by excimer fluorescence emission. J Am Chem Soc (2004) 0.91
Excimer formation by interstrand stacked pyrenes. Chem Commun (Camb) (2004) 0.91
Fluorescence Detection of Specific RNA Sequences Using 2'-Pyrene-Modified Oligoribonucleotides We are very grateful to Professor Hiroshi Sugiyama, Dr. Tetsuji Yamaoka, and Dr. Takashi Morii for ion-spray mass spectrometric measurements and helpful comments on this research. Angew Chem Int Ed Engl (2001) 0.88
Bispyrene-conjugated 2'-O-methyloligonucleotide as a highly specific RNA-recognition probe. Angew Chem Int Ed Engl (2002) 0.88
Synthesis and properties of oligonucleotides bearing a pendant pyrene group. Nucleic Acids Symp Ser (1985) 0.87
Fluorometric sensing of the salt-induced B-Z DNA transition by combination of two pyrene-labeled nucleobases. Chem Commun (Camb) (2005) 0.83
Detection of acceptor sites for antisense oligonucleotides on native folded RNA by fluorescence spectroscopy. Bioorg Med Chem (2003) 0.83
Global allostery model of hemoglobin. Modulation of O(2) affinity, cooperativity, and Bohr effect by heterotropic allosteric effectors. J Biol Chem (2002) 1.25
Nylon-oligomer degrading enzyme/substrate complex: catalytic mechanism of 6-aminohexanoate-dimer hydrolase. J Mol Biol (2007) 1.03
Clotrimazole binds to heme and enhances heme-dependent hemolysis: proposed antimalarial mechanism of clotrimazole. J Biol Chem (2001) 1.03
Neutralization of toxic heme by Plasmodium falciparum histidine-rich protein 2. J Biochem (2003) 1.02
Two-metal ion, Ni(II) and Cu(II), binding alpha-helical coiled coil peptide. J Am Chem Soc (2004) 0.95
Bis-pyrene-labeled oligonucleotides: sequence specificity of excimer and monomer fluorescence changes upon hybridization with DNA. Bioconjug Chem (2002) 0.93
DNA mismatch detection using a pyrene-excimer-forming probe. Chem Commun (Camb) (2005) 0.92
Pyrene-zipper array assembled via RNA duplex formation. J Am Chem Soc (2008) 0.89
Fluorescence Detection of Specific RNA Sequences Using 2'-Pyrene-Modified Oligoribonucleotides We are very grateful to Professor Hiroshi Sugiyama, Dr. Tetsuji Yamaoka, and Dr. Takashi Morii for ion-spray mass spectrometric measurements and helpful comments on this research. Angew Chem Int Ed Engl (2001) 0.88
Bispyrene-conjugated 2'-O-methyloligonucleotide as a highly specific RNA-recognition probe. Angew Chem Int Ed Engl (2002) 0.88
Effect of antifungal azoles on the heme detoxification system of malarial parasite. J Biochem (2002) 0.85
Bis-pyrene labeled DNA aptamer as an intelligent fluorescent biosensor. Bioorg Med Chem Lett (2003) 0.84
Pyrene aromatic arrays on RNA duplexes as helical templates. Org Biomol Chem (2007) 0.84
Semihemoglobins, high oxygen affinity dimeric forms of human hemoglobin respond efficiently to allosteric effectors without forming tetramers. J Biol Chem (2004) 0.83
Detection of acceptor sites for antisense oligonucleotides on native folded RNA by fluorescence spectroscopy. Bioorg Med Chem (2003) 0.83
Bis-pyrene-labeled molecular beacon: a monomer-excimer switching probe for the detection of DNA base alteration. Bioorg Med Chem (2007) 0.80
Interaction of gymnemic acid with cyclodextrins analyzed by isothermal titration calorimetry, NMR and dynamic light scattering. FEBS J (2005) 0.80
Creation of a type 1 blue copper site within a de novo coiled-coil protein scaffold. J Am Chem Soc (2010) 0.80
Creation of a binuclear purple copper site within a de novo coiled-coil protein. Biochemistry (2012) 0.79
Gating electrical transport through DNA molecules that bridge between silicon nanogaps. Nanoscale (2012) 0.79
Chemical identification and ethological function of soldier-specific secretion in Japanese subterranean termite Reticulitermes speratus (Rhinotermitidae). Biosci Biotechnol Biochem (2011) 0.79
How does hemoglobin generate such diverse functionality of physiological relevance? Biochim Biophys Acta (2013) 0.78
Cationic perylenediimide as a specific fluorescent binder to mismatch containing DNA. Bioorg Med Chem (2013) 0.78
A cysteine residue near the propionate side chain of heme is the radical site in ascorbate peroxidase. FEBS J (2007) 0.78
Target-induced strand release (TISR) from aptamer-DNA duplex: a general strategy for electronic detection of biomolecules ranging from a small molecule to a large protein. Analyst (2008) 0.78
DNA-templated assembly of naphthalenediimide arrays. Chemistry (2011) 0.77
The roles of conserved amino acids on substrate binding and conformational integrity of ClpB N-terminal domain. Biochemistry (2006) 0.77
RNA-mediated electron transfer: double exponential distance dependence. J Am Chem Soc (2009) 0.77
Fluorescent analysis of excess electron transfer through DNA. Bioorg Med Chem Lett (2009) 0.77
Helical pyrene-array along the outside of duplex RNA. Chem Commun (Camb) (2005) 0.76
2'-anthraquinone-conjugated oligonucleotide as an electrochemical probe for DNA mismatch. Bioconjug Chem (2007) 0.76
Selective formation of AAB- and ABC-type heterotrimeric alpha-helical coiled coils. Chemistry (2004) 0.76
Solution structure and stability of the DNA undecamer duplexes containing oxanine mismatch. Nucleic Acids Res (2011) 0.75
Efficient quenching of the excimer fluorescence derived from pyrene arrays on RNA duplexes. Nucleic Acids Symp Ser (Oxf) (2008) 0.75
Structure and excimer fluorescence of helical-pyrene-arrays assembled on duplex RNA. Nucleic Acids Symp Ser (Oxf) (2007) 0.75
Electrochemical detection of single-base mismatches in DNA by a redox-active intercalator conjugated oligonucleotide. Nucleic Acids Res Suppl (2003) 0.75
Synthesis and characterization of deoxyuridine triphosphates labeled with pyrene. Nucleic Acids Symp Ser (Oxf) (2009) 0.75
DNA ligation using photoremovable protecting groups. Nucleic Acids Symp Ser (Oxf) (2009) 0.75
Molecular sensing by pyrene excimer signal of fluorescent DNA aptamer. Nucleic Acids Res Suppl (2002) 0.75
Electrochemical detection of single base mismatches in DNA using redox-modified oligonucleotides. Nucleic Acids Symp Ser (Oxf) (2005) 0.75
Alignment of pyrene aromatics along RNA double helix. Nucleic Acids Symp Ser (Oxf) (2005) 0.75
Electron transfer through RNA: chemical probing of dual distance dependence. Bioorg Med Chem (2011) 0.75
Molecular arrangement and assembly guided by hydrophobic cavities inside DNA. Chemistry (2012) 0.75
Photoelectrochemical properties of pyrene modified DNA immobilized on gold electrode. Nucleic Acids Symp Ser (Oxf) (2006) 0.75
Light-up fluorescent probes utilizing binding behavior of perylenediimide derivatives to a hydrophobic pocket within DNA. Analyst (2014) 0.75
Electronic detection of DNA mutation based on strand exchange reaction. Bioorg Med Chem (2009) 0.75
Identification of an antiamyloidogenic substance from mulberry leaves. Neuroreport (2009) 0.75
Photoresponsive electrodes modified with DNA duplexes possessing a porphyrin dimer. Chemistry (2017) 0.75
Probing DNA sequences by anthraquinone-modified DNA that is immobilized on gold surface. Nucleic Acids Res Suppl (2002) 0.75
UV luminescent organic-capped ZnO quantum dots synthesized by alkoxide hydrolysis with dilute water. J Colloid Interface Sci (2010) 0.75
Duplex formation of multiple pyrene-modified RNAs. Nucleic Acids Symp Ser (Oxf) (2009) 0.75
Photocurrent generation through charge-transfer processes in noncovalent perylenediimide/DNA complexes. Chemistry (2015) 0.75
Formation of a fairly stable diazoate intermediate of 5-methyl-2'-deoxycytidine by HNO2 and NO, and its implication to a novel mutation mechanism in CpG site. Bioorg Med Chem (2002) 0.75
New pyrene-excimer probe for detection of single base mismatches in DNA. Nucleic Acids Symp Ser (Oxf) (2005) 0.75
Electrochemical detection of DNA single base mismatch by the use of strand exchange reaction. Nucleic Acids Symp Ser (Oxf) (2006) 0.75
Photocurrent responses from pyrene-modified RNA duplexes on gold surface. Nucleic Acids Symp Ser (Oxf) (2007) 0.75
Nitration of 2'-deoxyguanosine by a NO/O2 gas mixture: identification and characterization of N2-nitro-2'-deoxyguanosine. Org Lett (2003) 0.75
Highly ordered pyrene π-stacks on an RNA duplex display static excimer fluorescence. Org Biomol Chem (2012) 0.75
Diketopyrrolopyrrole j-aggregates formed by self-organization with DNA. Chem Asian J (2014) 0.75
Zipper-like assembly of multi-pyrenes covalently attached to RNA sequences via duplex formation. Nucleic Acids Symp Ser (Oxf) (2008) 0.75
Photocurrent generation enhanced by charge delocalization over stacked perylenediimide chromophores assembled within DNA. J Am Chem Soc (2014) 0.75
Functional tolerance of Streptomyces subtilisin inhibitor toward conformational and stability changes caused by single-point mutations in the hydrophobic core. J Biochem (2002) 0.75
Conformational changes of DNA by photoirradiation of DNA-bis(Zn(II)-cyclen)-azobenzene complex. Nucleosides Nucleotides Nucleic Acids (2006) 0.75
Electrochemical properties of anthraquinone-capped DNA-hairpins immobilized on gold surface. Nucleic Acids Symp Ser (Oxf) (2007) 0.75
Electrochemistry of redox-modified oligonucleotides bound to gold surface. Nucleic Acids Symp Ser (Oxf) (2004) 0.75
Fluorescence quenching properties of multiple pyrene-modified RNAs. Bioorg Med Chem (2009) 0.75
Synthesis and hybridization of oligonucleotides attached to a redox reporter via ethenyl linker at 5-position of pyrimidine base. Nucleic Acids Symp Ser (Oxf) (2009) 0.75
Electrochemical biosensors based on DNA strand exchange. Nucleic Acids Symp Ser (Oxf) (2007) 0.75