| Rank |
Title |
Journal |
Year |
PubWeight™‹?› |
|
1
|
Type, density, and location of immune cells within human colorectal tumors predict clinical outcome.
|
Science
|
2006
|
24.54
|
|
2
|
Effector memory T cells, early metastasis, and survival in colorectal cancer.
|
N Engl J Med
|
2005
|
12.64
|
|
3
|
Genesis: cluster analysis of microarray data.
|
Bioinformatics
|
2002
|
10.50
|
|
4
|
ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks.
|
Bioinformatics
|
2009
|
8.60
|
|
5
|
Histopathologic-based prognostic factors of colorectal cancers are associated with the state of the local immune reaction.
|
J Clin Oncol
|
2011
|
5.63
|
|
6
|
In situ cytotoxic and memory T cells predict outcome in patients with early-stage colorectal cancer.
|
J Clin Oncol
|
2009
|
3.97
|
|
7
|
A survey of tools for variant analysis of next-generation genome sequencing data.
|
Brief Bioinform
|
2013
|
3.60
|
|
8
|
Spatiotemporal dynamics of intratumoral immune cells reveal the immune landscape in human cancer.
|
Immunity
|
2013
|
3.50
|
|
9
|
CARMAweb: comprehensive R- and bioconductor-based web service for microarray data analysis.
|
Nucleic Acids Res
|
2006
|
2.93
|
|
10
|
Coordination of intratumoral immune reaction and human colorectal cancer recurrence.
|
Cancer Res
|
2009
|
2.37
|
|
11
|
miR-17, miR-19b, miR-20a, and miR-106a are down-regulated in human aging.
|
Aging Cell
|
2010
|
2.31
|
|
12
|
MARS: microarray analysis, retrieval, and storage system.
|
BMC Bioinformatics
|
2005
|
2.14
|
|
13
|
PathwayExplorer: web service for visualizing high-throughput expression data on biological pathways.
|
Nucleic Acids Res
|
2005
|
2.12
|
|
14
|
Biomolecular network reconstruction identifies T-cell homing factors associated with survival in colorectal cancer.
|
Gastroenterology
|
2009
|
2.01
|
|
15
|
Gene expression profiling of human mesenchymal stem cells derived from bone marrow during expansion and osteoblast differentiation.
|
BMC Genomics
|
2007
|
1.90
|
|
16
|
Evolution of genomic instability in diethylnitrosamine-induced hepatocarcinogenesis in mice.
|
Hepatology
|
2011
|
1.56
|
|
17
|
Identification of small gains and losses in single cells after whole genome amplification on tiling oligo arrays.
|
Nucleic Acids Res
|
2009
|
1.37
|
|
18
|
Characterization of the immunophenotypes and antigenomes of colorectal cancers reveals distinct tumor escape mechanisms and novel targets for immunotherapy.
|
Genome Biol
|
2015
|
1.35
|
|
19
|
MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data.
|
BMC Bioinformatics
|
2007
|
1.34
|
|
20
|
Oxytocin controls differentiation of human mesenchymal stem cells and reverses osteoporosis.
|
Stem Cells
|
2008
|
1.32
|
|
21
|
Activin a plays a critical role in proliferation and differentiation of human adipose progenitors.
|
Diabetes
|
2010
|
1.31
|
|
22
|
YPL.db: the Yeast Protein Localization database.
|
Nucleic Acids Res
|
2002
|
1.26
|
|
23
|
SIMPLEX: cloud-enabled pipeline for the comprehensive analysis of exome sequencing data.
|
PLoS One
|
2012
|
1.22
|
|
24
|
A quantization method based on threshold optimization for microarray short time series.
|
BMC Bioinformatics
|
2005
|
1.21
|
|
25
|
Mutations in ROGDI Cause Kohlschütter-Tönz Syndrome.
|
Am J Hum Genet
|
2012
|
1.21
|
|
26
|
Generic features of tertiary chromatin structure as detected in natural chromosomes.
|
Mol Cell Biol
|
2004
|
1.19
|
|
27
|
Proteomic analysis of human cataract aqueous humour: Comparison of one-dimensional gel LCMS with two-dimensional LCMS of unlabelled and iTRAQ®-labelled specimens.
|
J Proteomics
|
2010
|
1.18
|
|
28
|
Molecular processes during fat cell development revealed by gene expression profiling and functional annotation.
|
Genome Biol
|
2005
|
1.16
|
|
29
|
TAMEE: data management and analysis for tissue microarrays.
|
BMC Bioinformatics
|
2007
|
1.15
|
|
30
|
New trends in bioinformatics: from genome sequence to personalized medicine.
|
Exp Gerontol
|
2003
|
1.15
|
|
31
|
Identification of differential and functionally active miRNAs in both anaplastic lymphoma kinase (ALK)+ and ALK- anaplastic large-cell lymphoma.
|
Proc Natl Acad Sci U S A
|
2010
|
1.15
|
|
32
|
iLAP: a workflow-driven software for experimental protocol development, data acquisition and analysis.
|
BMC Bioinformatics
|
2009
|
1.14
|
|
33
|
Identification of evolutionarily conserved genetic regulators of cellular aging.
|
Aging Cell
|
2010
|
1.09
|
|
34
|
Comparative transcriptomics of human multipotent stem cells during adipogenesis and osteoblastogenesis.
|
BMC Genomics
|
2008
|
1.09
|
|
35
|
Differential transcriptional modulation of biological processes in adipocyte triglyceride lipase and hormone-sensitive lipase-deficient mice.
|
Genomics
|
2008
|
1.07
|
|
36
|
QPCR: Application for real-time PCR data management and analysis.
|
BMC Bioinformatics
|
2009
|
1.04
|
|
37
|
YPL.db2: the Yeast Protein Localization database, version 2.0.
|
Yeast
|
2005
|
1.01
|
|
38
|
The phosphatidylethanolamine level of yeast mitochondria is affected by the mitochondrial components Oxa1p and Yme1p.
|
FEBS J
|
2007
|
1.00
|
|
39
|
Client-server environment for high-performance gene expression data analysis.
|
Bioinformatics
|
2003
|
0.99
|
|
40
|
Java editor for biological pathways.
|
Bioinformatics
|
2003
|
0.98
|
|
41
|
Assessment of transcapillary glucose exchange in human skeletal muscle and adipose tissue.
|
Am J Physiol Endocrinol Metab
|
2003
|
0.96
|
|
42
|
Novel insights into adipogenesis from omics data.
|
Curr Med Chem
|
2009
|
0.95
|
|
43
|
Transcription factories.
|
Front Genet
|
2012
|
0.95
|
|
44
|
SPARQLGraph: a web-based platform for graphically querying biological Semantic Web databases.
|
BMC Bioinformatics
|
2014
|
0.95
|
|
45
|
Stathmin-like 2, a developmentally-associated neuronal marker, is expressed and modulated during osteogenesis of human mesenchymal stem cells.
|
Biochem Biophys Res Commun
|
2008
|
0.94
|
|
46
|
Organization of chromatin and histone modifications at a transcription site.
|
J Cell Biol
|
2007
|
0.93
|
|
47
|
MEMOSys: Bioinformatics platform for genome-scale metabolic models.
|
BMC Syst Biol
|
2011
|
0.93
|
|
48
|
MASPECTRAS 2: An integration and analysis platform for proteomic data.
|
Proteomics
|
2010
|
0.93
|
|
49
|
GPViz: dynamic visualization of genomic regions and variants affecting protein domains.
|
Bioinformatics
|
2013
|
0.90
|
|
50
|
Bioinformatics for cancer immunology and immunotherapy.
|
Cancer Immunol Immunother
|
2012
|
0.90
|
|
51
|
The role of intramyocellular lipids during hypoglycemia in patients with intensively treated type 1 diabetes.
|
J Clin Endocrinol Metab
|
2005
|
0.89
|
|
52
|
High STAT1 mRNA levels but not its tyrosine phosphorylation are associated with macrophage infiltration and bad prognosis in breast cancer.
|
BMC Cancer
|
2014
|
0.89
|
|
53
|
Reconstruction of gene association network reveals a transmembrane protein required for adipogenesis and targeted by PPARγ.
|
Cell Mol Life Sci
|
2010
|
0.87
|
|
54
|
Arsenic trioxide induces apoptosis preferentially in B-CLL cells of patients with unfavourable prognostic factors including del17p13.
|
J Mol Med (Berl)
|
2008
|
0.87
|
|
55
|
microRNAs in nociceptive circuits as predictors of future clinical applications.
|
Front Mol Neurosci
|
2013
|
0.85
|
|
56
|
SeqBench: integrated solution for the management and analysis of exome sequencing data.
|
BMC Res Notes
|
2014
|
0.84
|
|
57
|
Hypochlorite modification of sphingomyelin generates chlorinated lipid species that induce apoptosis and proteome alterations in dopaminergic PC12 neurons in vitro.
|
Free Radic Biol Med
|
2010
|
0.84
|
|
58
|
Cooperativity of stress-responsive transcription factors in core hypoxia-inducible factor binding regions.
|
PLoS One
|
2012
|
0.83
|
|
59
|
Analysis of DNA microarray data.
|
Curr Top Med Chem
|
2004
|
0.83
|
|
60
|
GOLD.db: genomics of lipid-associated disorders database.
|
BMC Genomics
|
2004
|
0.83
|
|
61
|
microRNAs in acute myeloid leukemia: expression patterns, correlations with genetic and clinical parameters, and prognostic significance.
|
Genes Chromosomes Cancer
|
2010
|
0.82
|
|
62
|
Co-expressed genes prepositioned in spatial neighborhoods stochastically associate with SC35 speckles and RNA polymerase II factories.
|
Cell Mol Life Sci
|
2013
|
0.81
|
|
63
|
Identification of microRNA-mRNA functional interactions in UVB-induced senescence of human diploid fibroblasts.
|
BMC Genomics
|
2013
|
0.81
|
|
64
|
ClusterControl: a web interface for distributing and monitoring bioinformatics applications on a Linux cluster.
|
Bioinformatics
|
2004
|
0.81
|
|
65
|
Arxes: retrotransposed genes required for adipogenesis.
|
Nucleic Acids Res
|
2010
|
0.80
|
|
66
|
Information technology solutions for integration of biomolecular and clinical data in the identification of new cancer biomarkers and targets for therapy.
|
Pharmacol Ther
|
2010
|
0.79
|
|
67
|
Nr4a1 is required for fasting-induced down-regulation of Pparγ2 in white adipose tissue.
|
Mol Endocrinol
|
2012
|
0.78
|
|
68
|
Transcriptional regulatory program in wild-type and retinoblastoma gene-deficient mouse embryonic fibroblasts during adipocyte differentiation.
|
BMC Res Notes
|
2011
|
0.78
|
|
69
|
A new platform linking chromosomal and sequence information.
|
Chromosome Res
|
2007
|
0.78
|
|
70
|
LPL-mediated lipolysis of VLDL induces an upregulation of AU-rich mRNAs and an activation of HuR in endothelial cells.
|
Atherosclerosis
|
2006
|
0.78
|
|
71
|
Adipose triglyceride lipase and hormone-sensitive lipase are involved in fat loss in JunB-deficient mice.
|
Endocrinology
|
2011
|
0.76
|
|
72
|
Genome-scale model management and comparison.
|
Methods Mol Biol
|
2013
|
0.76
|
|
73
|
Data integration and exploration for the identification of molecular mechanisms in tumor-immune cells interaction.
|
BMC Genomics
|
2010
|
0.76
|
|
74
|
MEMOSys 2.0: an update of the bioinformatics database for genome-scale models and genomic data.
|
Database (Oxford)
|
2014
|
0.75
|
|
75
|
GiSAO.db: a database for ageing research.
|
BMC Genomics
|
2011
|
0.75
|
|
76
|
Insights into global mechanisms and disease by gene expression profiling.
|
Methods Mol Biol
|
2011
|
0.75
|
|
77
|
Information management systems for pharmacogenomics.
|
Pharmacogenomics
|
2002
|
0.75
|
|
78
|
Systems for the management of pharmacogenomic information.
|
Methods Mol Biol
|
2005
|
0.75
|