Published in Nucleic Acids Res on January 01, 2006
Evolution of the core and pan-genome of Streptococcus: positive selection, recombination, and genome composition. Genome Biol (2007) 3.10
Comparative genomics-based investigation of resequencing targets in Vibrio fischeri: focus on point miscalls and artefactual expansions. BMC Genomics (2008) 1.39
High accuracy mass spectrometry analysis as a tool to verify and improve gene annotation using Mycobacterium tuberculosis as an example. BMC Genomics (2008) 1.20
Interrupted coding sequences in Mycobacterium smegmatis: authentic mutations or sequencing errors? Genome Biol (2007) 1.07
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Translational recoding in archaea. Extremophiles (2012) 0.98
Gene decay in archaea. Archaea (2007) 0.95
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Detecting the molecular scars of evolution in the Mycobacterium tuberculosis complex by analyzing interrupted coding sequences. BMC Evol Biol (2008) 0.83
The gene of an archaeal alpha-L-fucosidase is expressed by translational frameshifting. Nucleic Acids Res (2006) 0.82
Design and evaluation of Actichip, a thematic microarray for the study of the actin cytoskeleton. BMC Genomics (2007) 0.80
Conservation and revised annotation of the Treponema denticola prcB-prcA-prtP locus encoding the dentilisin (CTLP) protease complex. Mol Oral Microbiol (2012) 0.80
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Improved microbial gene identification with GLIMMER. Nucleic Acids Res (1999) 51.34
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Massive gene decay in the leprosy bacillus. Nature (2001) 11.98
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Complete genome sequence of the industrial bacterium Bacillus licheniformis and comparisons with closely related Bacillus species. Genome Biol (2004) 2.41
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The complete genome sequence of Bacillus licheniformis DSM13, an organism with great industrial potential. J Mol Microbiol Biotechnol (2004) 2.23
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Psi-Phi: exploring the outer limits of bacterial pseudogenes. Genome Res (2004) 2.04
Misreading of termination codons in eukaryotes by natural nonsense suppressor tRNAs. Nucleic Acids Res (2001) 1.68
Detecting and analyzing DNA sequencing errors: toward a higher quality of the Bacillus subtilis genome sequence. Genome Res (1999) 1.54
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Computational identification of putative programmed translational frameshift sites. Bioinformatics (2002) 1.25
RECODE: a database of frameshifting, bypassing and codon redefinition utilized for gene expression. Nucleic Acids Res (2001) 1.24
Towards a computational model for -1 eukaryotic frameshifting sites. Bioinformatics (2003) 1.20
Predicting genes expressed via -1 and +1 frameshifts. Nucleic Acids Res (2004) 1.18
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Enterotypes of the human gut microbiome. Nature (2011) 24.36
STRING 8--a global view on proteins and their functional interactions in 630 organisms. Nucleic Acids Res (2008) 20.62
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res (2010) 18.73
Structural identification of a bacterial quorum-sensing signal containing boron. Nature (2002) 8.11
BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark. Proteins (2005) 6.57
The ecoresponsive genome of Daphnia pulex. Science (2011) 6.55
EGFR and EphA2 are host factors for hepatitis C virus entry and possible targets for antiviral therapy. Nat Med (2011) 6.21
Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Science (2010) 5.56
eggNOG: automated construction and annotation of orthologous groups of genes. Nucleic Acids Res (2007) 4.84
eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges. Nucleic Acids Res (2011) 3.94
Seven new loci associated with age-related macular degeneration. Nat Genet (2013) 3.81
Increased vaccine efficacy against tuberculosis of recombinant Mycobacterium bovis bacille Calmette-Guérin mutants that secrete listeriolysin. J Clin Invest (2005) 3.19
An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi. Mol Microbiol (2003) 2.75
BBS10 encodes a vertebrate-specific chaperonin-like protein and is a major BBS locus. Nat Genet (2006) 2.68
Identification and characterization of rod-derived cone viability factor. Nat Genet (2004) 2.63
Identification of a novel BBS gene (BBS12) highlights the major role of a vertebrate-specific branch of chaperonin-related proteins in Bardet-Biedl syndrome. Am J Hum Genet (2006) 2.44
2-D structure of the A region of Xist RNA and its implication for PRC2 association. PLoS Biol (2010) 2.30
Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale. Nucleic Acids Res (2002) 2.24
MACSIMS: multiple alignment of complete sequences information management system. BMC Bioinformatics (2006) 2.23
Identification of genes associated with tumorigenesis and metastatic potential of hypopharyngeal cancer by microarray analysis. Oncogene (2004) 2.19
Issues in bioinformatics benchmarking: the case study of multiple sequence alignment. Nucleic Acids Res (2010) 2.05
Haemoglobin Noah Mehmet Oeztuerk (alpha(2) delta(2)143 (H21)His-->Tyr: A novel delta-chain variant in the 2,3-DPG binding site. J Chromatogr B Analyt Technol Biomed Life Sci (2008) 2.05
ADCK3, an ancestral kinase, is mutated in a form of recessive ataxia associated with coenzyme Q10 deficiency. Am J Hum Genet (2008) 2.04
Serendipitous discovery and X-ray structure of a human phosphate binding apolipoprotein. Structure (2006) 1.90
Seasonal and regional dynamics of M. ulcerans transmission in environmental context: deciphering the role of water bugs as hosts and vectors. PLoS Negl Trop Dis (2010) 1.89
Mammalian Scribble forms a tight complex with the betaPIX exchange factor. Curr Biol (2004) 1.89
Targeted high-throughput sequencing for diagnosis of genetically heterogeneous diseases: efficient mutation detection in Bardet-Biedl and Alström syndromes. J Med Genet (2012) 1.79
PipeAlign: A new toolkit for protein family analysis. Nucleic Acids Res (2003) 1.78
Characterization of therapeutic antibodies and related products. Anal Chem (2012) 1.75
Mycobacterium pseudoshottsii sp. nov., a slowly growing chromogenic species isolated from Chesapeake Bay striped bass (Morone saxatilis). Int J Syst Evol Microbiol (2005) 1.72
A comprehensive benchmark study of multiple sequence alignment methods: current challenges and future perspectives. PLoS One (2011) 1.65
A tale of two oxidation states: bacterial colonization of arsenic-rich environments. PLoS Genet (2007) 1.59
Carcinogenic properties of proteins with pro-inflammatory activity from Streptococcus infantarius (formerly S.bovis). Carcinogenesis (2004) 1.58
Orthology prediction methods: a quality assessment using curated protein families. Bioessays (2011) 1.56
Trends in glycosylation, glycoanalysis and glycoengineering of therapeutic antibodies and Fc-fusion proteins. Curr Pharm Biotechnol (2008) 1.53
Gene clusters involved in anaerobic benzoate degradation of Geobacter metallireducens. Mol Microbiol (2005) 1.50
Mycobacterium abscessus: a new player in the mycobacterial field. Trends Microbiol (2010) 1.49
Biosimilar, biobetter, and next generation antibody characterization by mass spectrometry. Anal Chem (2012) 1.49
All-trans retinoic acid is a ligand for the orphan nuclear receptor ROR beta. Nat Struct Biol (2003) 1.46
Transcription cofactors TRIM24, TRIM28, and TRIM33 associate to form regulatory complexes that suppress murine hepatocellular carcinoma. Proc Natl Acad Sci U S A (2011) 1.42
Gap, a mycobacterial specific integral membrane protein, is required for glycolipid transport to the cell surface. Mol Microbiol (2005) 1.42
The evolutionary origin of peroxisomes: an ER-peroxisome connection. Mol Biol Evol (2006) 1.39
The unique insert in myosin VI is a structural calcium-calmodulin binding site. Proc Natl Acad Sci U S A (2004) 1.38
A strategy for improving the room-temperature luminescence properties of Ru(II) complexes with tridentate ligands. J Am Chem Soc (2002) 1.38
Ortho-proteogenomics: multiple proteomes investigation through orthology and a new MS-based protocol. Genome Res (2008) 1.36
The brown algal kelp Laminaria digitata features distinct bromoperoxidase and iodoperoxidase activities. J Biol Chem (2003) 1.35
A method for detection of overoxidation of cysteines: peroxiredoxins are oxidized in vivo at the active-site cysteine during oxidative stress. Biochem J (2002) 1.34
Exome sequencing of Bardet-Biedl syndrome patient identifies a null mutation in the BBSome subunit BBIP1 (BBS18). J Med Genet (2013) 1.32
Cell-specific interaction of retinoic acid receptors with target genes in mouse embryonic fibroblasts and embryonic stem cells. Mol Cell Biol (2010) 1.30
Proteomic analysis identifies novel proteins of the Maurer's clefts, a secretory compartment delivering Plasmodium falciparum proteins to the surface of its host cell. Mol Cell Proteomics (2005) 1.29
Evolutionary divergence of enzymatic mechanisms for posttranslational polyglycylation. Cell (2009) 1.28
Sequence and comparative genomic analysis of actin-related proteins. Mol Biol Cell (2005) 1.28
TBP2 is essential for germ cell development by regulating transcription and chromatin condensation in the oocyte. Genes Dev (2009) 1.27
Dynamic behavior in diplatinum metalloreceptors. Inorg Chem (2002) 1.26
Whole-exome sequencing identifies mutations in GPR179 leading to autosomal-recessive complete congenital stationary night blindness. Am J Hum Genet (2012) 1.25
OrthoInspector: comprehensive orthology analysis and visual exploration. BMC Bioinformatics (2011) 1.25
Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta- and proteo-genomics. ISME J (2011) 1.24
Genomics of glycopeptidolipid biosynthesis in Mycobacterium abscessus and M. chelonae. BMC Genomics (2007) 1.24
Rod-derived Cone Viability Factor-2 is a novel bifunctional-thioredoxin-like protein with therapeutic potential. BMC Mol Biol (2007) 1.24
Cdc48 and Ufd3, new partners of the ubiquitin protease Ubp3, are required for ribophagy. EMBO Rep (2010) 1.23
Identification and functional characterization of a new member of the human Mcm protein family: hMcm8. Nucleic Acids Res (2003) 1.23
Endogenous morphine levels are increased in sepsis: a partial implication of neutrophils. PLoS One (2010) 1.21
DPY19L2 deletion as a major cause of globozoospermia. Am J Hum Genet (2011) 1.20
Lsr2 of Mycobacterium tuberculosis is a DNA-bridging protein. Nucleic Acids Res (2008) 1.18
Whole-exome sequencing identifies LRIT3 mutations as a cause of autosomal-recessive complete congenital stationary night blindness. Am J Hum Genet (2012) 1.18
Highly sensitive diagnosis of 43 monogenic forms of diabetes or obesity through one-step PCR-based enrichment in combination with next-generation sequencing. Diabetes Care (2013) 1.18
PtdIns5P regulation through evolution: roles in membrane trafficking? Trends Biochem Sci (2008) 1.17
A new look towards BAC-based array CGH through a comprehensive comparison with oligo-based array CGH. BMC Genomics (2007) 1.17
Changes of the phagosomal elemental concentrations by Mycobacterium tuberculosis Mramp. Microbiology (2005) 1.17
IntelliGO: a new vector-based semantic similarity measure including annotation origin. BMC Bioinformatics (2010) 1.16
Differential action on coregulator interaction defines inverse retinoid agonists and neutral antagonists. Chem Biol (2009) 1.14
Mycobacterium bovis BCG urease attenuates major histocompatibility complex class II trafficking to the macrophage cell surface. Infect Immun (2004) 1.11
Proteome-wide characterization of sugarbeet seed vigor and its tissue specific expression. Proc Natl Acad Sci U S A (2008) 1.11