Published in Nucleic Acids Res on January 01, 2006
Rfam: updates to the RNA families database. Nucleic Acids Res (2008) 11.61
RegRNA: an integrated web server for identifying regulatory RNA motifs and elements. Nucleic Acids Res (2006) 2.43
Ribosomal frameshifting in decoding antizyme mRNAs from yeast and protists to humans: close to 300 cases reveal remarkable diversity despite underlying conservation. Nucleic Acids Res (2007) 1.55
Transterm: a database to aid the analysis of regulatory sequences in mRNAs. Nucleic Acids Res (2008) 1.27
Identification of chromosomal alpha-proteobacterial small RNAs by comparative genome analysis and detection in Sinorhizobium meliloti strain 1021. BMC Genomics (2007) 1.11
Bacteriophage 2851 is a prototype phage for dissemination of the Shiga toxin variant gene 2c in Escherichia coli O157:H7. Infect Immun (2008) 1.11
RBPmap: a web server for mapping binding sites of RNA-binding proteins. Nucleic Acids Res (2014) 1.04
HBVRegDB: annotation, comparison, detection and visualization of regulatory elements in hepatitis B virus sequences. Virol J (2007) 0.97
Functional analysis of the interplay between translation termination, selenocysteine codon context, and selenocysteine insertion sequence-binding protein 2. J Biol Chem (2007) 0.90
Comparative 3'UTR analysis allows identification of regulatory clusters that drive Eph/ephrin expression in cancer cell lines. PLoS One (2008) 0.87
Detection of novel 3' untranslated region extensions with 3' expression microarrays. BMC Genomics (2010) 0.86
Genome-wide profiling of the activity-dependent hippocampal transcriptome. PLoS One (2013) 0.80
Informatic resources for identifying and annotating structural RNA motifs. Mol Biotechnol (2008) 0.80
TISs-ST: a web server to evaluate polymorphic translation initiation sites and their reflections on the secretory targets. BMC Bioinformatics (2007) 0.75
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res (1997) 665.31
Rfam: an RNA family database. Nucleic Acids Res (2003) 22.93
GenBank. Nucleic Acids Res (2003) 9.60
Searching for patterns in genomic data. Trends Genet (1997) 5.28
The power of the 3' UTR: translational control and development. Nat Rev Genet (2003) 4.84
ARED: human AU-rich element-containing mRNA database reveals an unexpectedly diverse functional repertoire of encoded proteins. Nucleic Acids Res (2001) 4.47
Translational control by the 3'-UTR: the ends specify the means. Trends Biochem Sci (2003) 4.00
UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. Update 2002. Nucleic Acids Res (2002) 3.57
Searching for regulatory elements in human noncoding sequences. Curr Opin Struct Biol (1997) 3.30
MicroRNAs: deviants no longer. Trends Genet (2002) 2.89
Translational termination efficiency in mammals is influenced by the base following the stop codon. Proc Natl Acad Sci U S A (1995) 2.49
RECODE 2003. Nucleic Acids Res (2003) 1.46
Regulation of alpha-globin mRNA stability. Exp Biol Med (Maywood) (2003) 1.38
Transterm: a database of messenger RNA components and signals. Nucleic Acids Res (2000) 1.02
Transterm: a database of mRNAs and translational control elements. Nucleic Acids Res (2002) 1.00
Roles of amyloid precursor protein and its fragments in regulating neural activity, plasticity and memory. Prog Neurobiol (2003) 2.57
Visualization of RNA-protein interactions in living cells: FMRP and IMP1 interact on mRNAs. EMBO J (2004) 1.99
Maintaining the ribosomal reading frame: the influence of the E site during translational regulation of release factor 2. Cell (2004) 1.68
Detecting overlapping coding sequences in virus genomes. BMC Bioinformatics (2006) 1.61
Pseudomonas syringae pv. actinidiae from recent outbreaks of kiwifruit bacterial canker belong to different clones that originated in China. PLoS One (2013) 1.48
CRISPRTarget: bioinformatic prediction and analysis of crRNA targets. RNA Biol (2013) 1.46
Comparison of alignment software for genome-wide bisulphite sequence data. Nucleic Acids Res (2012) 1.45
Detecting overlapping coding sequences with pairwise alignments. Bioinformatics (2004) 1.39
Global or local? Predicting secondary structure and accessibility in mRNAs. Nucleic Acids Res (2012) 1.36
Transterm: a database to aid the analysis of regulatory sequences in mRNAs. Nucleic Acids Res (2008) 1.27
Effect of 5'UTR introns on gene expression in Arabidopsis thaliana. BMC Genomics (2006) 1.24
Comparison of characteristics and function of translation termination signals between and within prokaryotic and eukaryotic organisms. Nucleic Acids Res (2006) 1.12
Endogenous secreted amyloid precursor protein-alpha regulates hippocampal NMDA receptor function, long-term potentiation and spatial memory. Neurobiol Dis (2008) 1.12
Technical considerations for reduced representation bisulfite sequencing with multiplexed libraries. J Biomed Biotechnol (2012) 1.04
Mapping the zebrafish brain methylome using reduced representation bisulfite sequencing. Epigenetics (2013) 1.02
Translation of the first upstream ORF in the hepatitis B virus pregenomic RNA modulates translation at the core and polymerase initiation codons. Nucleic Acids Res (2005) 1.01
Mammalian gene PEG10 expresses two reading frames by high efficiency -1 frameshifting in embryonic-associated tissues. J Biol Chem (2007) 1.01
Differential trafficking of AMPA and NMDA receptors during long-term potentiation in awake adult animals. J Neurosci (2007) 1.00
Transterm: a database of mRNAs and translational control elements. Nucleic Acids Res (2002) 1.00
HBVRegDB: annotation, comparison, detection and visualization of regulatory elements in hepatitis B virus sequences. Virol J (2007) 0.97
Mutation in the TCRα subunit constant gene (TRAC) leads to a human immunodeficiency disorder characterized by a lack of TCRαβ+ T cells. J Clin Invest (2011) 0.95
Live cell visualization of the interactions between HIV-1 Gag and the cellular RNA-binding protein Staufen1. Retrovirology (2010) 0.94
Molecular mimicry in the decoding of translational stop signals. Prog Nucleic Acid Res Mol Biol (2003) 0.92
The chromosome 9p21.3 coronary heart disease risk allele is associated with altered gene expression in normal heart and vascular tissues. PLoS One (2012) 0.91
Rapidly induced gene networks following induction of long-term potentiation at perforant path synapses in vivo. Hippocampus (2011) 0.91
Tandem termination signals: myth or reality? FEBS Lett (2002) 0.91
In silico estimation of translation efficiency in human cell lines: potential evidence for widespread translational control. PLoS One (2013) 0.91
Temporal profiling of gene networks associated with the late phase of long-term potentiation in vivo. PLoS One (2012) 0.90
Secreted amyloid precursor protein-alpha upregulates synaptic protein synthesis by a protein kinase G-dependent mechanism. Neurosci Lett (2009) 0.90
Secreted amyloid precursor proteins promote proliferation and glial differentiation of adult hippocampal neural progenitor cells. Hippocampus (2011) 0.90
Primordial soup or vinaigrette: did the RNA world evolve at acidic pH? Biol Direct (2012) 0.87
Noncanonical translation initiation of the Arabidopsis flowering time and alternative polyadenylation regulator FCA. Plant Cell (2010) 0.85
Identification of an effective siRNA target site and functional regulatory elements, within the hepatitis B virus posttranscriptional regulatory element. Virol J (2010) 0.85
Dopamine D1/D5 receptor activation fails to initiate an activity-independent late-phase LTP in rat hippocampus. Brain Res (2004) 0.85
Evidence from glycine transfer RNA of a frozen accident at the dawn of the genetic code. Biol Direct (2008) 0.84
Effects of HBV Genetic Variability on RNAi Strategies. Hepat Res Treat (2011) 0.81
The codon specificity of eubacterial release factors is determined by the sequence and size of the recognition loop. RNA (2010) 0.80
Time-dependent changes in gene expression induced by secreted amyloid precursor protein-alpha in the rat hippocampus. BMC Genomics (2013) 0.79
Accommodating the bacterial decoding release factor as an alien protein among the RNAs at the active site of the ribosome. Cell Res (2007) 0.78
Computational identification of new structured cis-regulatory elements in the 3'-untranslated region of human protein coding genes. Nucleic Acids Res (2012) 0.78
Inference of transcriptional regulation using gene expression data from the bovine and human genomes. BMC Genomics (2007) 0.78
Computational Detection of CRISPR/crRNA Targets. Methods Mol Biol (2015) 0.77
The type 2 anti-Müllerian hormone receptor has splice variants that are dominant-negative inhibitors. FEBS Lett (2013) 0.77
Production, purification and functional validation of human secreted amyloid precursor proteins for use as neuropharmacological reagents. J Neurosci Methods (2007) 0.76
A low-temperature phase of bis(tetrabutylammonium) octa-μ(3)-chlorido-hexachlorido-octahedro-hexatungstate. Acta Crystallogr C (2010) 0.75