Published in Nucleic Acids Res on January 01, 2006
Intronic microRNA precursors that bypass Drosha processing. Nature (2007) 9.65
A gross anatomy ontology for hymenoptera. PLoS One (2010) 9.11
FlyBase: genomes by the dozen. Nucleic Acids Res (2006) 6.96
Global analysis of patterns of gene expression during Drosophila embryogenesis. Genome Biol (2007) 6.27
Integrating phenotype ontologies across multiple species. Genome Biol (2010) 5.46
Uberon, an integrative multi-species anatomy ontology. Genome Biol (2012) 5.43
PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites. Genome Biol (2007) 4.66
The Gene Wiki: community intelligence applied to human gene annotation. Nucleic Acids Res (2009) 3.51
Constraint and turnover in sex-biased gene expression in the genus Drosophila. Nature (2007) 3.04
Gene family evolution across 12 Drosophila genomes. PLoS Genet (2007) 2.94
Demasculinization of X chromosomes in the Drosophila genus. Nature (2007) 2.85
Gene Ontology annotations: what they mean and where they come from. BMC Bioinformatics (2008) 2.84
PhosphoPep--a phosphoproteome resource for systems biology research in Drosophila Kc167 cells. Mol Syst Biol (2007) 2.56
4DXpress: a database for cross-species expression pattern comparisons. Nucleic Acids Res (2007) 2.38
The Protein Feature Ontology: a tool for the unification of protein feature annotations. Bioinformatics (2008) 2.33
Exploring strategies for protein trapping in Drosophila. Genetics (2006) 1.96
Genomewide spatial correspondence between nonsynonymous divergence and neutral polymorphism reveals extensive adaptation in Drosophila. Genetics (2007) 1.89
No influence of Indy on lifespan in Drosophila after correction for genetic and cytoplasmic background effects. PLoS Genet (2007) 1.82
FlyEx, the quantitative atlas on segmentation gene expression at cellular resolution. Nucleic Acids Res (2008) 1.76
YOGY: a web-based, integrated database to retrieve protein orthologs and associated Gene Ontology terms. Nucleic Acids Res (2006) 1.73
Evolutionary rate analyses of orthologs and paralogs from 12 Drosophila genomes. Genome Res (2007) 1.71
Worm Phenotype Ontology: integrating phenotype data within and beyond the C. elegans community. BMC Bioinformatics (2011) 1.69
A Drosophila model of Barth syndrome. Proc Natl Acad Sci U S A (2006) 1.65
PhenomicDB: a new cross-species genotype/phenotype resource. Nucleic Acids Res (2006) 1.65
An improved ontological representation of dendritic cells as a paradigm for all cell types. BMC Bioinformatics (2009) 1.56
Functional screening identifies miR-315 as a potent activator of Wingless signaling. Proc Natl Acad Sci U S A (2007) 1.53
Automated annotation of Drosophila gene expression patterns using a controlled vocabulary. Bioinformatics (2008) 1.50
DcGO: database of domain-centric ontologies on functions, phenotypes, diseases and more. Nucleic Acids Res (2012) 1.47
Genomewide clonal analysis of lethal mutations in the Drosophila melanogaster eye: comparison of the X chromosome and autosomes. Genetics (2007) 1.44
GMODWeb: a web framework for the Generic Model Organism Database. Genome Biol (2008) 1.38
Comparison of embryonic expression within multigene families using the FlyExpress discovery platform reveals more spatial than temporal divergence. Dev Dyn (2011) 1.27
Systems-wide analysis of a phosphatase knock-down by quantitative proteomics and phosphoproteomics. Mol Cell Proteomics (2009) 1.26
PDP1epsilon functions downstream of the circadian oscillator to mediate behavioral rhythms. J Neurosci (2007) 1.23
Cell rearrangements, cell divisions and cell death in a migrating epithelial sheet in the abdomen of Drosophila. Development (2009) 1.23
The UBX-regulated network in the haltere imaginal disc of D. melanogaster. Dev Biol (2006) 1.21
Multiple-pathway analysis of double-strand break repair mutations in Drosophila. PLoS Genet (2007) 1.20
Regulation of apoptosis of rbf mutant cells during Drosophila development. Dev Biol (2008) 1.20
Investigating the genetic circuitry of mastermind in Drosophila, a notch signal effector. Genetics (2007) 1.19
Evidence that strong positive selection drives neofunctionalization in the tandemly duplicated polyhomeotic genes in Drosophila. Proc Natl Acad Sci U S A (2008) 1.17
Viruses and antiviral immunity in Drosophila. Dev Comp Immunol (2013) 1.16
The Drosophila anatomy ontology. J Biomed Semantics (2013) 1.16
Computational RNomics of drosophilids. BMC Genomics (2007) 1.15
Duplication and gene conversion in the Drosophila melanogaster genome. PLoS Genet (2008) 1.14
Corona is required for higher-order assembly of transverse filaments into full-length synaptonemal complex in Drosophila oocytes. PLoS Genet (2008) 1.12
Ortholog-based protein-protein interaction prediction and its application to inter-species interactions. BMC Bioinformatics (2008) 1.12
Variable strength of translational selection among 12 Drosophila species. Genetics (2007) 1.07
Presynaptic establishment of the synaptic cleft extracellular matrix is required for post-synaptic differentiation. Genes Dev (2007) 1.07
Template disruptions and failure of double Holliday junction dissolution during double-strand break repair in Drosophila BLM mutants. Proc Natl Acad Sci U S A (2006) 1.06
Nonadaptive explanations for signatures of partial selective sweeps in Drosophila. Mol Biol Evol (2008) 1.04
Insect small nuclear RNA gene promoters evolve rapidly yet retain conserved features involved in determining promoter activity and RNA polymerase specificity. Nucleic Acids Res (2006) 1.03
Drosophila Uri, a PP1alpha binding protein, is essential for viability, maintenance of DNA integrity and normal transcriptional activity. BMC Mol Biol (2008) 1.02
Genetic dissociation of ethanol sensitivity and memory formation in Drosophila melanogaster. Genetics (2008) 1.02
Discovering transcriptional regulatory regions in Drosophila by a nonalignment method for phylogenetic footprinting. Proc Natl Acad Sci U S A (2007) 1.01
A Drosophila gain-of-function screen for candidate genes involved in steroid-dependent neuroendocrine cell remodeling. Genetics (2008) 0.99
Phylogenetic footprinting analysis in the upstream regulatory regions of the Drosophila enhancer of split genes. Genetics (2007) 0.99
Computational models for mechanics of morphogenesis. Birth Defects Res C Embryo Today (2012) 0.98
iBeetle-Base: a database for RNAi phenotypes in the red flour beetle Tribolium castaneum. Nucleic Acids Res (2014) 0.98
Mapping regions within cosmopolitan inversion In(3R)Payne associated with natural variation in body size in Drosophila melanogaster. Genetics (2007) 0.97
Organelle DB: an updated resource of eukaryotic protein localization and function. Nucleic Acids Res (2006) 0.97
BrainTrap: a database of 3D protein expression patterns in the Drosophila brain. Database (Oxford) (2010) 0.97
The Drosophila phenotype ontology. J Biomed Semantics (2013) 0.96
Direct control of the proneural gene atonal by retinal determination factors during Drosophila eye development. Dev Biol (2007) 0.96
Homolonto: generating homology relationships by pairwise alignment of ontologies and application to vertebrate anatomy. Bioinformatics (2010) 0.95
Genome and proteome annotation: organization, interpretation and integration. J R Soc Interface (2009) 0.95
Inference of RhoGAP/GTPase regulation using single-cell morphological data from a combinatorial RNAi screen. Genome Res (2010) 0.94
Tolerance in Drosophila. J Neurogenet (2009) 0.94
Semantic integration of data on transcriptional regulation. Bioinformatics (2010) 0.94
Positive selection near an inversion breakpoint on the neo-X chromosome of Drosophila americana. Genetics (2007) 0.94
Identification of genes that interact with Drosophila liquid facets. Genetics (2006) 0.94
dSno facilitates baboon signaling in the Drosophila brain by switching the affinity of Medea away from Mad and toward dSmad2. Genetics (2006) 0.92
Ontology application and use at the ENCODE DCC. Database (Oxford) (2015) 0.91
A database of wing diversity in the Hawaiian Drosophila. PLoS One (2007) 0.91
no poles encodes a predicted E3 ubiquitin ligase required for early embryonic development of Drosophila. Development (2009) 0.90
Mutation of the Apc1 homologue shattered disrupts normal eye development by disrupting G1 cell cycle arrest and progression through mitosis. Dev Biol (2007) 0.90
Representing ontogeny through ontology: a developmental biologist's guide to the gene ontology. Mol Reprod Dev (2010) 0.89
A comparative gene expression database for invertebrates. Evodevo (2011) 0.88
Mar, a MITE family of hAT transposons in Drosophila. Mob DNA (2012) 0.86
Learning sparse representations for fruit-fly gene expression pattern image annotation and retrieval. BMC Bioinformatics (2012) 0.86
Understanding kidney disease: toward the integration of regulatory networks across species. Semin Nephrol (2010) 0.85
Gene-specific cell labeling using MiMIC transposons. Nucleic Acids Res (2015) 0.85
Cardiac expression of the Drosophila Sulphonylurea receptor gene is regulated by an intron enhancer dependent upon the NK homeodomain factor Tinman. Mech Dev (2007) 0.85
reduced ocelli encodes the leucine rich repeat protein Pray For Elves in Drosophila melanogaster. Fly (Austin) (2007) 0.83
One hundred years of high-throughput Drosophila research. Chromosome Res (2006) 0.83
Identifying relevant data for a biological database: handcrafted rules versus machine learning. IEEE/ACM Trans Comput Biol Bioinform (2011) 0.83
Automatically identifying and annotating mouse embryo gene expression patterns. Bioinformatics (2011) 0.83
Evolution of Tom, 297, 17.6 and rover retrotransposons in Drosophilidae species. Mol Genet Genomics (2009) 0.83
Hosimary: a new hAT transposon group involved in horizontal transfer. Mol Genet Genomics (2010) 0.82
Image-level and group-level models for Drosophila gene expression pattern annotation. BMC Bioinformatics (2013) 0.82
Mutations in the Drosophila mitochondrial tRNA amidotransferase, bene/gatA, cause growth defects in mitotic and endoreplicating tissues. Genetics (2008) 0.81
The double-stranded break-forming activity of plant SPO11s and a novel rice SPO11 revealed by a Drosophila bioassay. BMC Mol Biol (2012) 0.81
Cardiac expression of the Drosophila Transglutaminase (CG7356) gene is directly controlled by myocyte enhancer factor-2. Dev Dyn (2008) 0.80
Phylogenetic and genomewide analyses suggest a functional relationship between kayak, the Drosophila fos homolog, and fig, a predicted protein phosphatase 2c nested within a kayak intron. Genetics (2007) 0.80
Functional interactions between the Moses corepressor and DHR78 nuclear receptor regulate growth in Drosophila. Genes Dev (2007) 0.79
RNAi knockdown of Nopp140 induces Minute-like phenotypes in Drosophila. Mol Biol Cell (2007) 0.79
Transgene rescue identifies an essential function for Drosophila beta spectrin in the nervous system and a selective requirement for ankyrin-2-binding activity. Mol Biol Cell (2010) 0.79
An ontology for microbial phenotypes. BMC Microbiol (2014) 0.79
Representation of anatomy in online atlases and databases: a survey and collection of patterns for interface design. BMC Dev Biol (2016) 0.78
BuT2 is a member of the third major group of hAT transposons and is involved in horizontal transfer events in the genus Drosophila. Genome Biol Evol (2014) 0.78
New Drosophila P-like elements and reclassification of Drosophila P-elements subfamilies. Mol Genet Genomics (2012) 0.78
Transcriptional and epigenetic signatures of zygotic genome activation during early Drosophila embryogenesis. BMC Genomics (2013) 0.78
The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res (2004) 54.37
The generic genome browser: a building block for a model organism system database. Genome Res (2002) 42.64
The Sequence Ontology: a tool for the unification of genome annotations. Genome Biol (2005) 18.20
An ontology for cell types. Genome Biol (2005) 11.71
FlyBase: genes and gene models. Nucleic Acids Res (2005) 11.15
Phenotypic data in FlyBase. Brief Bioinform (2001) 10.53
Inparanoid: a comprehensive database of eukaryotic orthologs. Nucleic Acids Res (2005) 9.90
Annotation of the Drosophila melanogaster euchromatic genome: a systematic review. Genome Biol (2002) 8.59
Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution. Genome Res (2005) 8.38