Published in Proc Natl Acad Sci U S A on April 01, 2008
Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes. Chromosome Res (2009) 2.33
Searching for footprints of positive selection in whole-genome SNP data from nonequilibrium populations. Genetics (2010) 1.59
Genetic hitchhiking versus background selection: the controversy and its implications. Philos Trans R Soc Lond B Biol Sci (2010) 1.25
The adaptive role of transposable elements in the Drosophila genome. Gene (2009) 1.14
Subcellular Relocalization and Positive Selection Play Key Roles in the Retention of Duplicate Genes of Populus Class III Peroxidase Family. Plant Cell (2014) 1.10
Identification of selective sweeps in closely related populations of the house mouse based on microsatellite scans. Genetics (2008) 1.10
The Mosaic Ancestry of the Drosophila Genetic Reference Panel and the D. melanogaster Reference Genome Reveals a Network of Epistatic Fitness Interactions. Mol Biol Evol (2015) 0.95
Tracing back the nascence of a new sex-determination pathway to the ancestor of bees and ants. Nat Commun (2012) 0.91
Evolutionary diversification of plant shikimate kinase gene duplicates. PLoS Genet (2008) 0.90
Evolution of antifreeze protein genes in the diatom genus fragilariopsis: evidence for horizontal gene transfer, gene duplication and episodic diversifying selection. Evol Bioinform Online (2011) 0.89
Segregating variation in the polycomb group gene cramped alters the effect of temperature on multiple traits. PLoS Genet (2011) 0.87
Intron sequences of arginine kinase in an intertidal snail suggest an ecotype-specific selective sweep and a gene duplication. Heredity (Edinb) (2010) 0.84
Identification of X-linked quantitative trait loci affecting cold tolerance in Drosophila melanogaster and fine mapping by selective sweep analysis. Mol Ecol (2010) 0.84
Drosophila genes that affect meiosis duration are among the meiosis related genes that are more often found duplicated. PLoS One (2011) 0.83
The comparative landscape of duplications in Heliconius melpomene and Heliconius cydno. Heredity (Edinb) (2016) 0.81
Novel acid phosphatase in Candida glabrata suggests selective pressure and niche specialization in the phosphate signal transduction pathway. Genetics (2010) 0.81
Accelerated evolution and coevolution drove the evolutionary history of AGPase sub-units during angiosperm radiation. Ann Bot (2012) 0.80
Annelid Distal-less/Dlx duplications reveal varied post-duplication fates. BMC Evol Biol (2011) 0.79
Positive Selection at the Polyhomeotic Locus Led to Decreased Thermosensitivity of Gene Expression in Temperate Drosophila melanogaster. Genetics (2015) 0.79
Selective sweep in the Flotillin-2 region of European Drosophila melanogaster. PLoS One (2013) 0.78
Gene conversion and positive selection driving the evolution of the Caenorhabditis ssp. ZIM/HIM-8 protein family. J Mol Evol (2009) 0.78
Molecular evolution of anthocyanin pigmentation genes following losses of flower color. BMC Evol Biol (2016) 0.77
Evolution of Type II Antifreeze Protein Genes in Teleost Fish: A Complex Scenario Involving Lateral Gene Transfers and Episodic Directional Selection. Evol Bioinform Online (2012) 0.77
Adaptive selection and coevolution at the proteins of the Polycomb repressive complexes in Drosophila. Heredity (Edinb) (2015) 0.76
Genome-Wide Dissection of the Heat Shock Transcription Factor Family Genes in Arachis. Front Plant Sci (2017) 0.75
A survey of methods and tools to detect recent and strong positive selection. J Biol Res (Thessalon) (2017) 0.75
Patterns of nucleotide diversity at the regions encompassing the Drosophila insulin-like peptide (dilp) genes: demography vs. positive selection in Drosophila melanogaster. PLoS One (2013) 0.75
Evidence of neofunctionalization after the duplication of the highly conserved Polycomb group gene Caf1-55 in the obscura group of Drosophila. Sci Rep (2017) 0.75
Evolutionary Fate of the Androgen Receptor-Signaling Pathway in Ray-Finned Fishes with a Special Focus on Cichlids. G3 (Bethesda) (2015) 0.75
Molecular evolution of teleost neural isozymes. J Mol Evol (2012) 0.75
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Evolutionary relationship of DNA sequences in finite populations. Genetics (1983) 40.67
The hitch-hiking effect of a favourable gene. Genet Res (1974) 34.74
DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics (2003) 32.63
Statistical tests of neutrality of mutations. Genetics (1993) 24.94
A test of neutral molecular evolution based on nucleotide data. Genetics (1987) 24.44
Evolution of genes and genomes on the Drosophila phylogeny. Nature (2007) 18.01
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MatInspector and beyond: promoter analysis based on transcription factor binding sites. Bioinformatics (2005) 11.75
The probability of duplicate gene preservation by subfunctionalization. Genetics (2000) 10.27
Polycomb silencing mechanisms and the management of genomic programmes. Nat Rev Genet (2007) 7.61
Detecting a local signature of genetic hitchhiking along a recombining chromosome. Genetics (2002) 7.43
A coalescent-based method for detecting and estimating recombination from gene sequences. Genetics (2002) 7.41
Genomic scans for selective sweeps using SNP data. Genome Res (2005) 6.43
African and North American populations of Drosophila melanogaster are very different at the DNA level. Nature (1993) 6.02
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Distribution and characterization of regulatory elements in the human genome. Genome Res (2002) 3.34
Demography and natural selection have shaped genetic variation in Drosophila melanogaster: a multi-locus approach. Genetics (2003) 3.28
Pattern of polymorphism after strong artificial selection in a domestication event. Proc Natl Acad Sci U S A (2004) 3.09
A test of neutrality based on interlocus associations. Genetics (1997) 3.09
Inferring the demographic history and rate of adaptive substitution in Drosophila. PLoS Genet (2006) 2.88
Distinguishing between selective sweeps and demography using DNA polymorphism data. Genetics (2005) 2.65
Strong selective sweep associated with a transposon insertion in Drosophila simulans. Proc Natl Acad Sci U S A (2004) 2.65
Ubiquitous selective constraints in the Drosophila genome revealed by a genome-wide interspecies comparison. Genome Res (2006) 2.64
Patterns of intron sequence evolution in Drosophila are dependent upon length and GC content. Genome Biol (2005) 2.41
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Estimating the time since the fixation of a beneficial allele. Genetics (2003) 2.29
Inferring the effects of demography and selection on Drosophila melanogaster populations from a chromosome-wide scan of DNA variation. Mol Biol Evol (2005) 2.11
The hitchhiking effect on linkage disequilibrium between linked neutral loci. Genetics (2006) 2.06
A complex genetic locus, polyhomeotic, is required for segmental specification and epidermal development in D. melanogaster. Cell (1987) 1.81
Population-genetic models of the fates of duplicate genes. Genetica (2003) 1.67
A two-locus gene conversion model with selection and its application to the human RHCE and RHD genes. Proc Natl Acad Sci U S A (2003) 1.65
Paleo-demography of the Drosophila melanogaster subgroup: application of the maximum likelihood method. Genes Genet Syst (1999) 1.55
The coalescent and infinite-site model of a small multigene family. Genetics (2003) 1.50
The recent demographic and adaptive history of Drosophila melanogaster. Heredity (Edinb) (2006) 1.47
Chromosomal effects of rapid gene evolution in Drosophila melanogaster. Science (2001) 1.36
Purifying selection maintains highly conserved noncoding sequences in Drosophila. Mol Biol Evol (2007) 1.36
A method for estimating the mutation, gene conversion and recombination parameters in small multigene families. Genetics (2002) 1.31
Evidence for a selective sweep in the wapl region of Drosophila melanogaster. Genetics (2005) 1.13
The complex genetic locus polyhomeotic in Drosophila melanogaster potentially encodes two homologous zinc-finger proteins. Gene (1991) 1.03
Neofunctionalization of duplicated genes under the pressure of gene conversion. Genetics (2008) 1.01
The polyhomeotic locus of Drosophila melanogaster is transcriptionally and post-transcriptionally regulated during embryogenesis. Mech Dev (1997) 0.91
Genetic polymorphism at two linked loci, Sod and Est-6, in Drosophila melanogaster. Gene (2002) 0.89
Genome scans of variation and adaptive change: extended analysis of a candidate locus close to the phantom gene region in Drosophila melanogaster. Mol Biol Evol (2007) 0.83
Evolution of genes and genomes on the Drosophila phylogeny. Nature (2007) 18.01
Detecting a local signature of genetic hitchhiking along a recombining chromosome. Genetics (2002) 7.43
Demography and natural selection have shaped genetic variation in Drosophila melanogaster: a multi-locus approach. Genetics (2003) 3.28
Inferring the demographic history and rate of adaptive substitution in Drosophila. PLoS Genet (2006) 2.88
Inferring the effects of demography and selection on Drosophila melanogaster populations from a chromosome-wide scan of DNA variation. Mol Biol Evol (2005) 2.11
Selective sweeps in the presence of interference among partially linked loci. Genetics (2003) 1.95
The impact of sampling schemes on the site frequency spectrum in nonequilibrium subdivided populations. Genetics (2009) 1.71
Distinctly different sex ratios in African and European populations of Drosophila melanogaster inferred from chromosomewide single nucleotide polymorphism data. Genetics (2007) 1.69
In vivo introduction of unpreferred synonymous codons into the Drosophila Adh gene results in reduced levels of ADH protein. Genetics (2003) 1.61
Searching for footprints of positive selection in whole-genome SNP data from nonequilibrium populations. Genetics (2010) 1.59
Pervasive adaptive evolution among interactors of the Drosophila hybrid inviability gene, Nup96. Mol Biol Evol (2006) 1.47
Inferring the population structure and demography of Drosophila ananassae from multilocus data. Genetics (2004) 1.38
Compensatory evolution of a precursor messenger RNA secondary structure in the Drosophila melanogaster Adh gene. Proc Natl Acad Sci U S A (2003) 1.36
Bayesian variable selection for detecting adaptive genomic differences among populations. Genetics (2008) 1.33
The relationship of nucleotide polymorphism, recombination rate and selection in wild tomato species. Genetics (2005) 1.33
Demographic inference reveals African and European admixture in the North American Drosophila melanogaster population. Genetics (2012) 1.31
A critical assessment of storytelling: gene ontology categories and the importance of validating genomic scans. Mol Biol Evol (2012) 1.29
Insertion/deletion and nucleotide polymorphism data reveal constraints in Drosophila melanogaster introns and intergenic regions. Genetics (2005) 1.23
Distinguishing the hitchhiking and background selection models. Genetics (2003) 1.22
Gene expression variation in African and European populations of Drosophila melanogaster. Genome Biol (2008) 1.22
Using multilocus sequence data to assess population structure, natural selection, and linkage disequilibrium in wild tomatoes. Mol Biol Evol (2007) 1.16
Evidence for a selective sweep in the wapl region of Drosophila melanogaster. Genetics (2005) 1.13
Maximum-likelihood methods for detecting recent positive selection and localizing the selected site in the genome. Genetics (2005) 1.13
DNA sequence variation at a duplicated gene: excess of replacement polymorphism and extensive haplotype structure in the Drosophila melanogaster bicoid region. Mol Biol Evol (2002) 1.04
Analytical results on the neutral non-equilibrium allele frequency spectrum based on diffusion theory. Theor Popul Biol (2011) 1.02
Population genetics of speciation in two closely related wild tomatoes (Solanum section Lycopersicon). Genetics (2008) 1.01
Approximate Bayesian analysis of Drosophila melanogaster polymorphism data reveals a recent colonization of Southeast Asia. Mol Biol Evol (2011) 1.00
Selective sweeps in multilocus models of quantitative traits. Genetics (2012) 0.99
Experimentally increased codon bias in the Drosophila Adh gene leads to an increase in larval, but not adult, alcohol dehydrogenase activity. Genetics (2009) 0.99
Population transcriptomics of Drosophila melanogaster females. BMC Genomics (2011) 0.99
Genealogical footprints of speciation processes in wild tomatoes: demography and evidence for historical gene flow. Evolution (2005) 0.96
Adaptation to drought in two wild tomato species: the evolution of the Asr gene family. New Phytol (2011) 0.96
Nucleotide diversity patterns of local adaptation at drought-related candidate genes in wild tomatoes. Mol Ecol (2010) 0.94
Contrasting patterns of sequence divergence and base composition between Drosophila introns and intergenic regions. Biol Lett (2006) 0.93
Population genetic inference using a fixed number of segregating sites: a reassessment. Genet Res (2007) 0.91
The role of natural selection in genetic differentiation of worldwide populations of Drosophila ananassae. Genetics (2004) 0.91
Analyzing the evolution of RNA secondary structures in vertebrate introns using Kimura's model of compensatory fitness interactions. Mol Biol Evol (2008) 0.88
Global mRNA stability is not associated with levels of gene expression in Drosophila melanogaster but shows a negative correlation with codon bias. J Mol Evol (2005) 0.88
Recent strong positive selection on Drosophila melanogaster HDAC6, a gene encoding a stress surveillance factor, as revealed by population genomic analysis. Mol Biol Evol (2009) 0.87
Balancing selection at the tomato RCR3 Guardee gene family maintains variation in strength of pathogen defense. PLoS Genet (2012) 0.87
Evidence of gene conversion associated with a selective sweep in Drosophila melanogaster. Mol Biol Evol (2006) 0.85
Population subdivision and molecular sequence variation: theory and analysis of Drosophila ananassae data. Genetics (2003) 0.85
Evolution of mating isolation between populations of Drosophila ananassae. Mol Ecol (2008) 0.84
Identification of X-linked quantitative trait loci affecting cold tolerance in Drosophila melanogaster and fine mapping by selective sweep analysis. Mol Ecol (2010) 0.84
Searching for the origin of Gagauzes: inferences from Y-chromosome analysis. Am J Hum Biol (2009) 0.83
Inference of seed bank parameters in two wild tomato species using ecological and genetic data. Proc Natl Acad Sci U S A (2011) 0.83
Pleiotropic effect of disrupting a conserved sequence involved in a long-range compensatory interaction in the Drosophila Adh gene. Genetics (2004) 0.83
Targets of selection in a disease resistance network in wild tomatoes. Mol Plant Pathol (2011) 0.82
Estimating parameters of speciation models based on refined summaries of the joint site-frequency spectrum. PLoS One (2011) 0.82
Trans-species polymorphism and allele-specific expression in the CBF gene family of wild tomatoes. Mol Biol Evol (2012) 0.80
Selective constraints in conserved folded RNAs of drosophilid and hominid genomes. Mol Biol Evol (2010) 0.80
Speed of adaptation and genomic footprints of host-parasite coevolution under arms race and trench warfare dynamics. Evolution (2014) 0.79
Determining the relationship of gene expression and global mRNA stability in Drosophila melanogaster and Escherichia coli using linear models. Gene (2008) 0.79
Sequence evolution and expression regulation of stress-responsive genes in natural populations of wild tomato. PLoS One (2013) 0.79
Paleo-Balkan and Slavic contributions to the genetic pool of Moldavians: insights from the Y chromosome. PLoS One (2013) 0.79
Homogeneity of common cosmopolitan inversion frequencies in Southeast Asian Drosophila melanogaster. J Genet (2005) 0.78
Selective sweep in the Flotillin-2 region of European Drosophila melanogaster. PLoS One (2013) 0.78
Population history of the Dniester-Carpathians: evidence from Alu markers. J Hum Genet (2007) 0.78
The role of the effective population size in compensatory evolution. Genome Biol Evol (2011) 0.77