Published in J Mol Biol on December 27, 2005
ESTHER, the database of the α/β-hydrolase fold superfamily of proteins: tools to explore diversity of functions. Nucleic Acids Res (2012) 1.88
The PHA Depolymerase Engineering Database: A systematic analysis tool for the diverse family of polyhydroxyalkanoate (PHA) depolymerases. BMC Bioinformatics (2009) 1.22
Assay of poly(3-hydroxybutyrate) depolymerase activity and product determination. Appl Environ Microbiol (2006) 0.98
Structural redesign of lipase B from Candida antarctica by circular permutation and incremental truncation. J Mol Biol (2009) 0.88
Effects of mutations in the substrate-binding domain of poly[(R)-3-hydroxybutyrate] (PHB) depolymerase from Ralstonia pickettii T1 on PHB degradation. Appl Environ Microbiol (2006) 0.85
A Simple Route for Purifying Extracellular Poly(3-hydroxybutyrate)-depolymerase from Penicillium pinophilum. Enzyme Res (2014) 0.82
The structure of PhaZ7 at atomic (1.2 A) resolution reveals details of the active site and suggests a substrate-binding mode. Acta Crystallogr Sect F Struct Biol Cryst Commun (2010) 0.82
Identification and characterization of a novel class of extracellular poly(3-hydroxybutyrate) depolymerase from Bacillus sp. strain NRRL B-14911. Appl Environ Microbiol (2011) 0.78
Crystallization and preliminary crystallographic analysis of poly(3-hydroxybutyrate) depolymerase from Bacillus thuringiensis. Acta Crystallogr F Struct Biol Commun (2014) 0.76
Substrate stereoselectivity of poly(Asp) hydrolase-1 capable of cleaving β-amide bonds as revealed by investigation of enzymatic hydrolysis of stereoisomeric β-tri(Asp)s. AMB Express (2015) 0.75
STRUCTURAL AND FUNCTIONAL CONSEQUENCES OF CIRCULAR PERMUTATION ON THE ACTIVE SITE OF OLD YELLOW ENZYME. ACS Catal (2015) 0.75
Engineering of Yarrowia lipolytica lipase Lip8p by circular permutation to alter substrate and temperature characteristics. J Ind Microbiol Biotechnol (2014) 0.75
Crystal Structure and Substrate Specificity Modification of Acetyl Xylan Esterase from Aspergillus luchuensis. Appl Environ Microbiol (2017) 0.75
Building programmable jigsaw puzzles with RNA. Science (2004) 3.51
Molecular nanosprings in spider capture-silk threads. Nat Mater (2003) 2.23
Sacrificial bonds and hidden length: unraveling molecular mesostructures in tough materials. Biophys J (2005) 1.61
Nonequivalence observed for the 16-meric structure of a small heat shock protein, SpHsp16.0, from Schizosaccharomyces pombe. Structure (2012) 1.57
Inter-subunit interaction and quaternary rearrangement defined by the central stalk of prokaryotic V1-ATPase. EMBO Rep (2009) 1.46
Crystal structure of the (R)-specific enoyl-CoA hydratase from Aeromonas caviae involved in polyhydroxyalkanoate biosynthesis. J Biol Chem (2002) 1.46
Crystal structures of the group II chaperonin from Thermococcus strain KS-1: steric hindrance by the substituted amino acid, and inter-subunit rearrangement between two crystal forms. J Mol Biol (2004) 1.46
Crystal structure of the [2Fe-2S] oxidative-stress sensor SoxR bound to DNA. Proc Natl Acad Sci U S A (2008) 1.45
Transparent and high gas barrier films of cellulose nanofibers prepared by TEMPO-mediated oxidation. Biomacromolecules (2009) 1.40
Elastic modulus of single cellulose microfibrils from tunicate measured by atomic force microscopy. Biomacromolecules (2009) 1.28
Structure of a cyanobacterial BLUF protein, Tll0078, containing a novel FAD-binding blue light sensor domain. J Mol Biol (2005) 1.25
Crystal structure of human pirin: an iron-binding nuclear protein and transcription cofactor. J Biol Chem (2003) 1.23
A repressor protein, PhaR, regulates polyhydroxyalkanoate (PHA) synthesis via its direct interaction with PHA. J Bacteriol (2002) 1.21
Suppression of differentiation and proliferation of early chondrogenic cells by Notch. J Bone Miner Metab (2003) 1.21
Crystal structures of bacterial lipoprotein localization factors, LolA and LolB. EMBO J (2003) 1.21
Purification and properties of an intracellular 3-hydroxybutyrate-oligomer hydrolase (PhaZ2) in Ralstonia eutropha H16 and its identification as a novel intracellular poly(3-hydroxybutyrate) depolymerase. J Bacteriol (2003) 1.17
Maytansine and cellular metabolites of antibody-maytansinoid conjugates strongly suppress microtubule dynamics by binding to microtubules. Mol Cancer Ther (2010) 1.16
Crystal structure of the complex between calyculin A and the catalytic subunit of protein phosphatase 1. Structure (2002) 1.14
Origin of the long-range attraction between surfactant-coated surfaces. Proc Natl Acad Sci U S A (2005) 1.13
Crystal structures of [NiFe] hydrogenase maturation proteins HypC, HypD, and HypE: insights into cyanation reaction by thiol redox signaling. Mol Cell (2007) 1.12
Structural studies of the carbon monoxide complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F: suggestion for the initial activation site for dihydrogen. J Am Chem Soc (2002) 1.12
Novel intracellular 3-hydroxybutyrate-oligomer hydrolase in Wautersia eutropha H16. J Bacteriol (2005) 1.09
Properties of a novel intracellular poly(3-hydroxybutyrate) depolymerase with high specific activity (PhaZd) in Wautersia eutropha H16. J Bacteriol (2005) 1.09
Molecular characterization and properties of (R)-specific enoyl-CoA hydratases from Pseudomonas aeruginosa: metabolic tools for synthesis of polyhydroxyalkanoates via fatty acid beta-oxidation. Int J Biol Macromol (2003) 1.08
Atomic force microscopy imaging and pulling of nucleic acids. Curr Opin Struct Biol (2004) 1.06
Isolated poly(3-hydroxybutyrate) (PHB) granules are complex bacterial organelles catalyzing formation of PHB from acetyl coenzyme A (CoA) and degradation of PHB to acetyl-CoA. J Bacteriol (2007) 1.06
ATP binding is critical for the conformational change from an open to closed state in archaeal group II chaperonin. J Biol Chem (2003) 1.06
Alteration of substrate chain-length specificity of type II synthase for polyhydroxyalkanoate biosynthesis by in vitro evolution: in vivo and in vitro enzyme assays. Biomacromolecules (2004) 1.04
Neuferricin, a novel extracellular heme-binding protein, promotes neurogenesis. J Neurochem (2009) 1.04
Crystal structure of fucose-specific lectin from Aleuria aurantia binding ligands at three of its five sugar recognition sites. Biochemistry (2003) 1.04
Molecular aspects of boundary lubrication by human lubricin: effect of disulfide bonds and enzymatic digestion. Langmuir (2007) 1.03
Crystal structure of the flavin reductase component (HpaC) of 4-hydroxyphenylacetate 3-monooxygenase from Thermus thermophilus HB8: Structural basis for the flavin affinity. Proteins (2008) 1.03
Increased bioplastic production with an RNA polymerase sigma factor SigE during nitrogen starvation in Synechocystis sp. PCC 6803. DNA Res (2013) 1.03
Cloning of an intracellular D(-)-3-hydroxybutyrate-oligomer hydrolase gene from Ralstonia eutropha H16 and identification of the active site serine residue by site-directed mutagenesis. J Biosci Bioeng (2002) 1.03
Alteration of chain length substrate specificity of Aeromonas caviae R-enantiomer-specific enoyl-coenzyme A hydratase through site-directed mutagenesis. Appl Environ Microbiol (2003) 1.03
Exploring writhe in supercoiled minicircle DNA. J Phys Condens Matter (2006) 1.03
Crystal structure of HypA, a nickel-binding metallochaperone for [NiFe] hydrogenase maturation. J Mol Biol (2009) 1.02
Crystal structure of the oxygenase component (HpaB) of the 4-hydroxyphenylacetate 3-monooxygenase from Thermus thermophilus HB8. J Biol Chem (2007) 1.02
Crystal structure of archaeal photolyase from Sulfolobus tokodaii with two FAD molecules: implication of a novel light-harvesting cofactor. J Mol Biol (2006) 1.02
DNA apophotolyase from Anacystis nidulans: 1.8 A structure, 8-HDF reconstitution and X-ray-induced FAD reduction. Acta Crystallogr D Biol Crystallogr (2004) 1.01
Fermentative production of (R)-(-)-3-hydroxybutyrate using 3-hydroxybutyrate dehydrogenase null mutant of Ralstonia eutropha and recombinant Escherichia coli. J Biosci Bioeng (2006) 1.01
Crystal structure of human cyclophilin D in complex with its inhibitor, cyclosporin A at 0.96-A resolution. Proteins (2008) 1.00
Evolution of polyhydroxyalkanoate (PHA) production system by "enzyme evolution": successful case studies of directed evolution. Macromol Biosci (2004) 1.00
Enhanced accumulation and changed monomer composition in polyhydroxyalkanoate (PHA) copolyester by in vitro evolution of Aeromonas caviae PHA synthase. Appl Environ Microbiol (2002) 1.00
Crystal structure of uridine-diphospho-N-acetylglucosamine pyrophosphorylase from Candida albicans and catalytic reaction mechanism. J Biol Chem (2007) 1.00
Ultrahigh-resolution structure of high-potential iron-sulfur protein from Thermochromatium tepidum. Acta Crystallogr D Biol Crystallogr (2002) 1.00
Crystal structure of stilbene synthase from Arachis hypogaea. Proteins (2005) 0.98
In vitro evolution of a polyhydroxybutyrate synthase by intragenic suppression-type mutagenesis. J Biochem (2002) 0.98
Crystal structure of aspartate racemase from Pyrococcus horikoshii OT3 and its implications for molecular mechanism of PLP-independent racemization. J Mol Biol (2002) 0.98
Origin of asymmetry at the intersubunit interfaces of V1-ATPase from Thermus thermophilus. J Mol Biol (2013) 0.98
In vivo tissue response and degradation behavior of PLLA and stereocomplexed PLA nanofibers. Biomacromolecules (2009) 0.97
Structural studies of the Cpx pathway activator NlpE on the outer membrane of Escherichia coli. Structure (2007) 0.97
Pathway-level acceleration of glycogen catabolism by a response regulator in the cyanobacterium Synechocystis species PCC 6803. Plant Physiol (2014) 0.97
Determination of microtubule dynamic instability in living cells. Methods Cell Biol (2010) 0.94
Poly(3-hydroxybutyrate) (PHB) depolymerase PhaZa1 is involved in mobilization of accumulated PHB in Ralstonia eutropha H16. Appl Environ Microbiol (2007) 0.93
Characterization and properties of G4X mutants of Ralstonia eutropha PHA synthase for poly(3-hydroxybutyrate) biosynthesis in Escherichia coli. Macromol Biosci (2005) 0.93
Structural insight into gene duplication, gene fusion and domain swapping in the evolution of PLP-independent amino acid racemases. FEBS Lett (2002) 0.93
Crystal structure of the stationary phase survival protein SurE with metal ion and AMP. J Mol Biol (2007) 0.92
Crystal structures of N-acetylglucosamine-phosphate mutase, a member of the alpha-D-phosphohexomutase superfamily, and its substrate and product complexes. J Biol Chem (2006) 0.92
Crystal structure of dissimilatory sulfite reductase D (DsrD) protein--possible interaction with B- and Z-DNA by its winged-helix motif. Structure (2003) 0.92
Coexpression of genetically engineered 3-ketoacyl-ACP synthase III (fabH) and polyhydroxyalkanoate synthase (phaC) genes leads to short-chain-length-medium-chain-length polyhydroxyalkanoate copolymer production from glucose in Escherichia coli JM109. Appl Environ Microbiol (2004) 0.91
Change of surface structure of poly(3-hydroxybutyrate) film upon enzymatic hydrolysis by PHB depolymerase. Biomacromolecules (2002) 0.91
Effective enhancement of short-chain-length-medium-chain-length polyhydroxyalkanoate copolymer production by coexpression of genetically engineered 3-ketoacyl-acyl-carrier-protein synthase III (fabH) and polyhydroxyalkanoate synthesis genes. Biomacromolecules (2004) 0.91
Development of a fully automated macromolecular crystallization/observation robotic system, HTS-80. Acta Crystallogr D Biol Crystallogr (2005) 0.91
Mechanoanions produced by mechanical fracture of bacterial cellulose: ionic nature of glycosidic linkage and electrostatic charging. J Phys Chem A (2012) 0.91
Artificial human telomeres from DNA nanocircle templates. Proc Natl Acad Sci U S A (2002) 0.91
Structural basis for regulation of bifunctional roles in replication initiator protein. Proc Natl Acad Sci U S A (2007) 0.91
The crystal structure of an oxidatively stable subtilisin-like alkaline serine protease, KP-43, with a C-terminal beta-barrel domain. J Biol Chem (2004) 0.91
Expression of 3-ketoacyl-acyl carrier protein reductase (fabG) genes enhances production of polyhydroxyalkanoate copolymer from glucose in recombinant Escherichia coli JM109. Appl Environ Microbiol (2005) 0.90
Adsorption of biopolyester depolymerase on silicon wafer and poly[(R)-3-hydroxybutyric acid] single crystal revealed by real-time AFM. Macromol Biosci (2006) 0.89
Structure of the C subunit of V-type ATPase from Thermus thermophilus at 1.85 A resolution. Acta Crystallogr D Biol Crystallogr (2004) 0.89
Enzymatic degradation processes of lamellar crystals in thin films for poly[(R)-3-hydroxybutyric acid] and its copolymers revealed by real-time atomic force microscopy. Biomacromolecules (2004) 0.89
Active intermediates of polyhydroxyalkanoate synthase from Aeromonas caviae in polymerization reaction. Biomacromolecules (2012) 0.88
Biosynthesis of polyhydroxyalkanoate (PHA) copolymer from fructose using wild-type and laboratory-evolved PHA synthases. Macromol Biosci (2005) 0.88
Crystal structure of the small form of glucose-inhibited division protein A from Thermus thermophilus HB8. Proteins (2005) 0.88
Biosynthesis and characterization of poly(3-hydroxybutyrate-co-3- hydroxyhexanoate) from palm oil products in a Wautersia eutropha mutant. Biotechnol Lett (2005) 0.88
Hypoxia enhances colony formation and proliferation but inhibits differentiation of human dental pulp cells. Arch Oral Biol (2010) 0.88
Opening and closing of the hydrophobic cavity of LolA coupled to lipoprotein binding and release. J Biol Chem (2008) 0.88
Dimer structure and conformational variability in the N-terminal region of an archaeal small heat shock protein, StHsp14.0. J Struct Biol (2010) 0.88
Structural basis of [NiFe] hydrogenase maturation by Hyp proteins. Biol Chem (2012) 0.88
Annealing and melting behavior of poly(l-lactic acid) single crystals as revealed by in situ atomic force microscopy. Biomacromolecules (2003) 0.87
Biosynthesis of polyhydroxyalkanaotes by a novel facultatively anaerobic Vibrio sp. under marine conditions. Mar Biotechnol (NY) (2011) 0.87
Crystal structure of TTHA1657 (AT-rich DNA-binding protein; p25) from Thermus thermophilus HB8 at 2.16 A resolution. Proteins (2007) 0.86
Effect of increased PHA synthase activity on polyhydroxyalkanoates biosynthesis in Synechocystis sp. PCC6803. Int J Biol Macromol (2002) 0.86
Catalytic triad of intracellular poly(3-hydroxybutyrate) depolymerase (PhaZ1) in Ralstonia eutropha H16. J Biosci Bioeng (2003) 0.86
Thiolysis of poly(3-hydroxybutyrate) with polyhydroxyalkanoate synthase from Ralstonia eutropha. J Biochem (2006) 0.86
Enzymatic characterization of AMP phosphorylase and ribose-1,5-bisphosphate isomerase functioning in an archaeal AMP metabolic pathway. J Bacteriol (2012) 0.86
Enzymatic degradation processes of poly[(R)-3-hydroxybutyric acid] and poly[(R)-3-hydroxybutyric acid-co-(R)-3-hydroxyvaleric acid] single crystals revealed by atomic force microscopy: effects of molecular weight and second-monomer composition on erosion rates. Biomacromolecules (2005) 0.85
Effects of mutations in the substrate-binding domain of poly[(R)-3-hydroxybutyrate] (PHB) depolymerase from Ralstonia pickettii T1 on PHB degradation. Appl Environ Microbiol (2006) 0.85
Synthesis of a novel class of polyhydroxyalkanoates in Arabidopsis peroxisomes, and their use in monitoring short-chain-length intermediates of beta-oxidation. Plant Cell Physiol (2002) 0.85
Crystal structures of the HypCD complex and the HypCDE ternary complex: transient intermediate complexes during [NiFe] hydrogenase maturation. Structure (2012) 0.85