Published in BMC Evol Biol on January 30, 2006
Integration of biological networks and gene expression data using Cytoscape. Nat Protoc (2007) 27.10
Unequal evolutionary conservation of human protein interactions in interologous networks. Genome Biol (2007) 2.45
MicroRNA regulation of human protein protein interaction network. RNA (2007) 1.82
Global similarity and local divergence in human and mouse gene co-expression networks. BMC Evol Biol (2006) 1.32
Protein evolution on a human signaling network. BMC Syst Biol (2009) 1.25
Modular co-evolution of metabolic networks. BMC Bioinformatics (2007) 1.23
The human protein coevolution network. Genome Res (2009) 1.13
Iteration method for predicting essential proteins based on orthology and protein-protein interaction networks. BMC Syst Biol (2012) 1.01
Exploring community structure in biological networks with random graphs. BMC Bioinformatics (2014) 0.95
Metabolome based reaction graphs of M. tuberculosis and M. leprae: a comparative network analysis. PLoS One (2007) 0.95
Protein-protein interaction networks (PPI) and complex diseases. Gastroenterol Hepatol Bed Bench (2014) 0.93
Genetic interaction networks: better understand to better predict. Front Genet (2013) 0.92
Genome-wide survey of natural selection on functional, structural, and network properties of polymorphic sites in Saccharomyces paradoxus. Mol Biol Evol (2011) 0.92
High throughput interaction data reveals degree conservation of hub proteins. Pac Symp Biocomput (2009) 0.86
Efficiency of the immunome protein interaction network increases during evolution. Immunome Res (2008) 0.86
Co-expression among constituents of a motif in the protein-protein interaction network. J Bioinform Comput Biol (2009) 0.84
Differential evolutionary conservation of motif modes in the yeast protein interaction network. BMC Genomics (2006) 0.84
Rich-club phenomenon in the interactome of P. falciparum--artifact or signature of a parasitic life style? PLoS One (2007) 0.80
Unexpected complexity of the reef-building coral Acropora millepora transcription factor network. BMC Syst Biol (2011) 0.80
Evolutionarily conserved network properties of intrinsically disordered proteins. PLoS One (2015) 0.77
A methodology for detecting the orthology signal in a PPI network at a functional complex level. BMC Bioinformatics (2012) 0.77
Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci U S A (1998) 192.97
Emergence of scaling in random networks Science (1999) 89.38
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature (2000) 47.15
Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature (2002) 45.19
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature (2002) 37.66
Network biology: understanding the cell's functional organization. Nat Rev Genet (2004) 36.62
Lethality and centrality in protein networks. Nature (2001) 29.64
Error and attack tolerance of complex networks Nature (2000) 27.90
Comparative assessment of large-scale data sets of protein-protein interactions. Nature (2002) 24.25
A protein interaction map of Drosophila melanogaster. Science (2003) 20.06
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. J Mol Biol (2001) 16.47
DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions. Nucleic Acids Res (2002) 15.70
Evidence for dynamically organized modularity in the yeast protein-protein interaction network. Nature (2004) 13.27
The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum. PLoS Biol (2003) 11.86
Protein interaction mapping in C. elegans using proteins involved in vulval development. Science (2000) 11.61
Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins. Proc Natl Acad Sci U S A (2000) 10.98
A network of protein-protein interactions in yeast. Nat Biotechnol (2000) 10.31
Inparanoid: a comprehensive database of eukaryotic orthologs. Nucleic Acids Res (2005) 9.90
Protein complexes and functional modules in molecular networks. Proc Natl Acad Sci U S A (2003) 9.03
The protein-protein interaction map of Helicobacter pylori. Nature (2001) 8.71
Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature (2005) 8.19
Evolutionary rate in the protein interaction network. Science (2002) 7.75
Conserved patterns of protein interaction in multiple species. Proc Natl Acad Sci U S A (2005) 7.48
Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae. Nat Genet (2001) 7.16
Modular organization of cellular networks. Proc Natl Acad Sci U S A (2003) 6.24
Assessing experimentally derived interactions in a small world. Proc Natl Acad Sci U S A (2003) 4.53
Structure and evolution of transcriptional regulatory networks. Curr Opin Struct Biol (2004) 4.48
Evolutionary conservation of motif constituents in the yeast protein interaction network. Nat Genet (2003) 4.04
Protein interaction networks from yeast to human. Curr Opin Struct Biol (2004) 3.15
No simple dependence between protein evolution rate and the number of protein-protein interactions: only the most prolific interactors tend to evolve slowly. BMC Evol Biol (2003) 3.07
The identification of functional modules from the genomic association of genes. Proc Natl Acad Sci U S A (2002) 2.59
Interactome modeling. FEBS Lett (2005) 2.41
A simple dependence between protein evolution rate and the number of protein-protein interactions. BMC Evol Biol (2003) 2.38
Genome evolution reveals biochemical networks and functional modules. Proc Natl Acad Sci U S A (2003) 2.08
Evolution and topology in the yeast protein interaction network. Genome Res (2004) 1.86
Peeling the yeast protein network. Proteomics (2005) 1.71
The proteins of linked genes evolve at similar rates. Nature (2000) 1.65
Interaction and domain networks of yeast. Proteomics (2002) 1.24
Evolution thinks modular. Nat Genet (2003) 1.05
Genetic diversity and chloroquine selective sweeps in Plasmodium falciparum. Nature (2002) 12.09
A major genome region underlying artemisinin resistance in malaria. Science (2012) 6.25
Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing. Nature (2012) 4.37
Multiple transporters associated with malaria parasite responses to chloroquine and quinine. Mol Microbiol (2003) 3.26
Alternative mutations at position 76 of the vacuolar transmembrane protein PfCRT are associated with chloroquine resistance and unique stereospecific quinine and quinidine responses in Plasmodium falciparum. Mol Pharmacol (2002) 2.57
Adaptive copy number evolution in malaria parasites. PLoS Genet (2008) 2.04
Quantitative dissection of clone-specific growth rates in cultured malaria parasites. Int J Parasitol (2007) 1.66
Genetic linkage of pfmdr1 with food vacuolar solute import in Plasmodium falciparum. EMBO J (2006) 1.58
Mutations in transmembrane domains 1, 4 and 9 of the Plasmodium falciparum chloroquine resistance transporter alter susceptibility to chloroquine, quinine and quinidine. Mol Microbiol (2006) 1.51
Regulatory hotspots in the malaria parasite genome dictate transcriptional variation. PLoS Biol (2008) 1.47
Chloroquine susceptibility and reversibility in a Plasmodium falciparum genetic cross. Mol Microbiol (2010) 1.42
pfcrt is more than the Plasmodium falciparum chloroquine resistance gene: a functional and evolutionary perspective. Acta Trop (2005) 1.39
Plasmodium falciparum Na+/H+ exchanger activity and quinine resistance. Mol Biochem Parasitol (2007) 1.39
Genome-wide compensatory changes accompany drug- selected mutations in the Plasmodium falciparum crt gene. PLoS One (2008) 1.36
DNA barcoding of parasites and invertebrate disease vectors: what you don't know can hurt you. Trends Parasitol (2003) 1.25
An optimized microarray platform for assaying genomic variation in Plasmodium falciparum field populations. Genome Biol (2011) 1.24
Probing the multifactorial basis of Plasmodium falciparum quinine resistance: evidence for a strain-specific contribution of the sodium-proton exchanger PfNHE. Mol Biochem Parasitol (2009) 1.20
Optimizing comparative genomic hybridization probes for genotyping and SNP detection in Plasmodium falciparum. Genomics (2009) 1.06
Gene copy number and malaria biology. Trends Parasitol (2009) 1.05
Genetic crosses in the apicomplexan parasite Cryptosporidium parvum define recombination parameters. Mol Microbiol (2007) 1.04
Quantitative trait loci mapping reveals candidate pathways regulating cell cycle duration in Plasmodium falciparum. BMC Genomics (2010) 1.02
High-throughput 454 resequencing for allele discovery and recombination mapping in Plasmodium falciparum. BMC Genomics (2011) 1.00
Viral organization of human proteins. PLoS One (2010) 1.00
Design, synthesis, and study of a mycobactin-artemisinin conjugate that has selective and potent activity against tuberculosis and malaria. J Am Chem Soc (2011) 1.00
Direct evidence for the adaptive role of copy number variation on antifolate susceptibility in Plasmodium falciparum. Mol Microbiol (2013) 0.99
A process similar to autophagy is associated with cytocidal chloroquine resistance in Plasmodium falciparum. PLoS One (2013) 0.96
Graph theoretical approach to study eQTL: a case study of Plasmodium falciparum. Bioinformatics (2009) 0.91
Differential association of Plasmodium falciparum Na+/H+ exchanger polymorphism and quinine responses in field- and culture-adapted isolates of Plasmodium falciparum. Antimicrob Agents Chemother (2011) 0.91
A microarray platform and novel SNP calling algorithm to evaluate Plasmodium falciparum field samples of low DNA quantity. BMC Genomics (2014) 0.90
Mutation in the Plasmodium falciparum CRT protein determines the stereospecific activity of antimalarial cinchona alkaloids. Antimicrob Agents Chemother (2012) 0.90
Variable numbers of tandem repeats in Plasmodium falciparum genes. J Mol Evol (2010) 0.87
An apicoplast localized ubiquitylation system is required for the import of nuclear-encoded plastid proteins. PLoS Pathog (2013) 0.86
Quantification of multiple infections of Plasmodium falciparum in vitro. Malar J (2012) 0.84
Shared molecular strategies of the malaria parasite P. falciparum and the human virus HIV-1. Mol Cell Proteomics (2011) 0.83
The landscape of inherited and de novo copy number variants in a Plasmodium falciparum genetic cross. BMC Genomics (2011) 0.82
A comprehensive Plasmodium falciparum protein interaction map reveals a distinct architecture of a core interactome. Proteomics (2009) 0.81
Expression of the essential Kinase PfCDPK1 from Plasmodium falciparum in Toxoplasma gondii facilitates the discovery of novel antimalarial drugs. Antimicrob Agents Chemother (2014) 0.80
Microsatellite analysis in Plasmodium falciparum. Methods Mol Med (2002) 0.78
A supervised learning approach to the ensemble clustering of genes. Int J Data Min Bioinform (2014) 0.77
Symmetric Epistasis Estimation (SEE) and its application to dissecting interaction map of Plasmodium falciparum. Mol Biosyst (2012) 0.76
P. falciparum Na(+)/H(+) exchanger (PfNHE) function and quinine resistance (QNR) [Reply to: Spillman et al. "Acid extrusion from the intraerythrocytic malaria parasite is not via a Na(+)/H(+) exchanger" Mol. Biochem. Parasitol. 2008 162 (1) 96-99]. Mol Biochem Parasitol (2009) 0.76
Plasmodium research in the postgenomic era. Trends Parasitol (2005) 0.75