Published in Proc Natl Acad Sci U S A on June 01, 1980
Sodium and chlorine ions as part of the DNA solvation shell. Biophys J (1999) 1.76
Evaluation of ion binding to DNA duplexes using a size-modified Poisson-Boltzmann theory. Biophys J (2007) 1.60
Sequence-specific binding of counterions to B-DNA. Proc Natl Acad Sci U S A (2000) 1.53
Detection of alkali metal ions in DNA crystals using state-of-the-art X-ray diffraction experiments. Nucleic Acids Res (2001) 1.49
Importance of coulombic end effects on cation accumulation near oligoelectrolyte B-DNA: a demonstration using 23Na NMR. Biophys J (1995) 1.25
Mg NMR in DNA solutions: Dominance of site binding effects. Proc Natl Acad Sci U S A (1980) 1.15
Mean-field description of ionic size effects with nonuniform ionic sizes: a numerical approach. Phys Rev E Stat Nonlin Soft Matter Phys (2011) 1.14
Competitive binding of Mg2+, Ca2+, Na+, and K+ ions to DNA in oriented DNA fibers: experimental and Monte Carlo simulation results. Biophys J (1999) 1.03
Similarities and differences in interaction of K+ and Na+ with condensed ordered DNA. A molecular dynamics computer simulation study. Nucleic Acids Res (2006) 1.01
Na+ shows a markedly higher potential than K+ in DNA compaction in a crowded environment. Biophys J (2005) 1.01
UV spectroscopic identification and thermodynamic analysis of protonated third strand deoxycytidine residues at neutrality in the triplex d(C(+)-T)6:[d(A-G)6.d(C-T)6]; evidence for a proton switch. Nucleic Acids Res (1995) 0.98
Winding of the DNA helix by divalent metal ions. Nucleic Acids Res (1997) 0.96
Distribution of ions around DNA, probed by energy transfer. Proc Natl Acad Sci U S A (1986) 0.93
Effect of an Electrolyte Cation on Detecting DNA Damage with the Latch Constriction of α-Hemolysin. J Phys Chem Lett (2014) 0.87
Dielectric constant and ionic strength effects on DNA precipitation. Biophys J (1996) 0.86
Electrostatics of nucleic acid folding under conformational constraint. J Am Chem Soc (2012) 0.85
The interaction of polyamines with DNA: a 23Na NMR study. Nucleic Acids Res (1981) 0.83
Competitive adsorption and ordered packing of counterions near highly charged surfaces: From mean-field theory to Monte Carlo simulations. Phys Rev E Stat Nonlin Soft Matter Phys (2012) 0.81
Interactions of spermidine and methylspermidine with DNA studied by nuclear magnetic resonance self-diffusion measurements. Biophys J (1996) 0.80
Cation binding linked to a sequence-specific CAP-DNA interaction. Biophys Chem (2006) 0.80
Binding of cations of group IA and IIA to bovine serum amine oxidase: effect on the activity. Biophys J (2002) 0.80
Electrostatic properties of complexes along a DNA glycosylase damage search pathway. Biochemistry (2014) 0.79
Ionic Size Effects: Generalized Boltzmann Distributions, Counterion Stratification, and Modified Debye Length. Nonlinearity (2013) 0.79
The electrostatic field of DNA: the role of the nucleic acid conformation. Nucleic Acids Res (1982) 0.79
23Na NMR study of the effect of organic osmolytes on DNA counterion atmosphere. Biophys J (1996) 0.79
Does Cation Size Affect Occupancy and Electrostatic Screening of the Nucleic Acid Ion Atmosphere? J Am Chem Soc (2016) 0.76
Multiscale methods for computational RNA enzymology. Methods Enzymol (2015) 0.76
The salt dependence of the interferon regulatory factor 1 DNA binding domain binding to DNA reveals ions are localized around protein and DNA. Biochemistry (2008) 0.75
Study by (23)Na-NMR, (1)H-NMR, and ultraviolet spectroscopy of the thermal stability of an 11-basepair oligonucleotide. Biophys J (2000) 0.75
The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides. Q Rev Biophys (1978) 14.75
Thermodynamic analysis of ion effects on the binding and conformational equilibria of proteins and nucleic acids: the roles of ion association or release, screening, and ion effects on water activity. Q Rev Biophys (1978) 9.44
Different conformations of double-stranded nucleic acid in solution as revealed by circular dichroism. Biopolymers (1973) 3.70
Electrical double layer, zeta potential, and electrophoretic charge of double-stranded DNA. Biopolymers (1977) 2.34
Supercoiling in closed circular DNA: dependence upon ion type and concentration. Biochemistry (1978) 2.01
Sodium-23 NMR studies of cation-DNA interactions. Biophys Chem (1978) 1.73
Limiting laws and counterion condensation in polyelectrolyte solutions. IV. The approach to the limit and the extraordinary stability of the charge fraction. Biophys Chem (1977) 1.58
Interactions of polyelectrolytes with simple electrolytes. II. Donnan equilibria obtained with DNA in solutions of 1-1 electrolytes. J Phys Chem (1967) 1.49
Structural transitions of deoxyribonucleic acid in aqueous electrolyte solutions. II. The role of hydration. Biochemistry (1975) 1.39
Specificity of Na+ binding to phosphatidylserine vesicles from a 23Na NMR relaxation rate study. Biochim Biophys Acta (1979) 1.27
Correlations between the duplex winding angle and the circular dichroism spectrum of calf thymus DNA. Biochemistry (1979) 1.26
Structural transitions of deoxyribonucleic acid in aqueous electrolyte solutions. I. Reference spectra of conformational limits. Biochemistry (1975) 1.17
23Na nuclear magnetic resonance relaxation studies of sodium ion interaction with soluble RNA. Proc Natl Acad Sci U S A (1969) 1.17
The Alkali Ion-DNA Interaction as Reflected in the Nuclear Relaxation Rates of Na and Rb. Proc Natl Acad Sci U S A (1975) 1.15
Magnetic resonance distinction between site bound and atmospherically bound paramagnetic counterions in polyelectrolyte solutions. Biophys Chem (1976) 0.94
NMR and density study of Co2+ site binding by polyelectrolytes. Biophys Chem (1973) 0.82
Nuclear magnetic relaxation of 23Na and 7Li ions in polyphosphate solutions. Biophys Chem (1976) 0.82
23Na+ NMR in solutions of mucopolysaccharides. FEBS Lett (1978) 0.82
Coupling of local folding to site-specific binding of proteins to DNA. Science (1994) 9.49
Thermodynamic analysis of ion effects on the binding and conformational equilibria of proteins and nucleic acids: the roles of ion association or release, screening, and ion effects on water activity. Q Rev Biophys (1978) 9.44
Ion effects on ligand-nucleic acid interactions. J Mol Biol (1976) 5.52
Characterization of the cytoplasm of Escherichia coli K-12 as a function of external osmolarity. Implications for protein-DNA interactions in vivo. J Mol Biol (1991) 3.73
Analysis of effects of salts and uncharged solutes on protein and nucleic acid equilibria and processes: a practical guide to recognizing and interpreting polyelectrolyte effects, Hofmeister effects, and osmotic effects of salts. Adv Protein Chem (1998) 3.30
Polypeptides containing highly conserved regions of transcription initiation factor sigma 70 exhibit specificity of binding to promoter DNA. Cell (1992) 3.27
Use of liquid hydrocarbon and amide transfer data to estimate contributions to thermodynamic functions of protein folding from the removal of nonpolar and polar surface from water. Biochemistry (1992) 3.26
RNA polymerase-promoter interactions: the comings and goings of RNA polymerase. J Bacteriol (1998) 3.16
Contribution to the thermodynamics of protein folding from the reduction in water-accessible nonpolar surface area. Biochemistry (1991) 2.83
Factor independent activation of rrnB P1. An "extended" promoter with an upstream element that dramatically increases promoter strength. J Mol Biol (1994) 2.73
Variability of the intracellular ionic environment of Escherichia coli. Differences between in vitro and in vivo effects of ion concentrations on protein-DNA interactions and gene expression. J Biol Chem (1987) 2.67
Upstream operators enhance repression of the lac promoter. Science (1986) 2.58
Electrostatic effects on polynucleotide transitions. II. Behavior of titrated systems. Biopolymers (1967) 2.55
Enthalpy and heat capacity changes for formation of an oligomeric DNA duplex: interpretation in terms of coupled processes of formation and association of single-stranded helices. Biochemistry (1999) 2.54
Salt-nucleic acid interactions. Annu Rev Phys Chem (1995) 2.50
Replacement of potassium chloride by potassium glutamate dramatically enhances protein-DNA interactions in vitro. Biochemistry (1987) 2.45
Origins of the osmoprotective properties of betaine and proline in Escherichia coli K-12. J Bacteriol (1992) 2.34
Chronic peritoneal dialysis in juvenile-onset diabetes mellitus: a comparison with hemodialysis. Mayo Clin Proc (1978) 2.27
Vapor pressure osmometry studies of osmolyte-protein interactions: implications for the action of osmoprotectants in vivo and for the interpretation of "osmotic stress" experiments in vitro. Biochemistry (2000) 2.24
Interpretation of monovalent and divalent cation effects on the lac repressor-operator interaction. Biochemistry (1977) 2.23
Role of the hydrophobic effect in stability of site-specific protein-DNA complexes. J Mol Biol (1989) 2.20
Analysis of equilibrium and kinetic measurements to determine thermodynamic origins of stability and specificity and mechanism of formation of site-specific complexes between proteins and helical DNA. Methods Enzymol (1991) 2.18
Inhibition of transcription initiation by lac repressor. J Mol Biol (1995) 2.13
Monte Carlo description of oligoelectrolyte properties of DNA oligomers: range of the end effect and the approach of molecular and thermodynamic properties to the polyelectrolyte limits. Proc Natl Acad Sci U S A (1989) 2.11
Thermodynamic origins of specificity in the lac repressor-operator interaction. Adaptability in the recognition of mutant operator sites. J Mol Biol (1985) 2.00
Equilibrium dialysis studies of polyamine binding to DNA. Biopolymers (1982) 1.97
Nonspecific interaction of lac repressor with DNA: an association reaction driven by counterion release. Biochemistry (1977) 1.95
Hydrophobic effect in protein folding and other noncovalent processes involving proteins. Proc Natl Acad Sci U S A (1989) 1.92
Kinetics and mechanism of the interaction of Escherichia coli RNA polymerase with the lambda PR promoter. J Mol Biol (1984) 1.84
Physical properties of DNA in vivo as probed by the length dependence of the lac operator looping process. Biochemistry (1988) 1.83
Pentalysine-deoxyribonucleic acid interactions: a model for the general effects of ion concentrations on the interactions of proteins with nucleic acids. Biochemistry (1980) 1.78
Biophysical characterization of changes in amounts and activity of Escherichia coli cell and compartment water and turgor pressure in response to osmotic stress. Biophys J (2000) 1.73
Ion distributions around DNA and other cylindrical polyions: theoretical descriptions and physical implications. Annu Rev Biophys Biophys Chem (1990) 1.73
Sodium-23 NMR studies of cation-DNA interactions. Biophys Chem (1978) 1.73
Double helical DNA: conformations, physical properties, and interactions with ligands. Annu Rev Biochem (1981) 1.73
Interpretation of preferential interaction coefficients of nonelectrolytes and of electrolyte ions in terms of a two-domain model. Biophys J (1995) 1.70
Thermodynamics of interactions of urea and guanidinium salts with protein surface: relationship between solute effects on protein processes and changes in water-accessible surface area. Protein Sci (2001) 1.69
HO. and DNase I probing of E sigma 70 RNA polymerase--lambda PR promoter open complexes: Mg2+ binding and its structural consequences at the transcription start site. Biochemistry (1995) 1.68
Nonspecific interactions of Escherichia coli RNA polymerase with native and denatured DNA: differences in the binding behavior of core and holoenzyme. Biochemistry (1978) 1.67
Importance of oligoelectrolyte end effects for the thermodynamics of conformational transitions of nucleic acid oligomers: a grand canonical Monte Carlo analysis. Biopolymers (1991) 1.64
Thermodynamics of the interactions of lac repressor with variants of the symmetric lac operator: effects of converting a consensus site to a non-specific site. J Mol Biol (1997) 1.63
Specific and non-specific interactions of integration host factor with DNA: thermodynamic evidence for disruption of multiple IHF surface salt-bridges coupled to DNA binding. J Mol Biol (2001) 1.60
Two open complexes and a requirement for Mg2+ to open the lambda PR transcription start site. Science (1993) 1.51
Nicotinic acid-associated myopathy: a report of three cases. Am J Med (1989) 1.51
Conformational transitions of duplex and triplex nucleic acid helices: thermodynamic analysis of effects of salt concentration on stability using preferential interaction coefficients. Biophys J (1994) 1.50
Stable DNA loops in vivo and in vitro: roles in gene regulation at a distance and in biophysical characterization of DNA. Prog Nucleic Acid Res Mol Biol (1990) 1.39
Na+ effects on transition of DNA and polynucleotides of variable linear charge density. Biopolymers (1976) 1.36
The relationship between the poisson-boltzmann model and the condensation hypothesis: an analysis based on the low salt form of the Donnan coefficient. Biophys Chem (1980) 1.36
Rapid response to osmotic upshift by osmoregulated genes in Escherichia coli and Salmonella typhimurium. J Bacteriol (1988) 1.34
Regulation of the kinetics of the interaction of Escherichia coli RNA polymerase with the lambda PR promoter by salt concentration. Biochemistry (1985) 1.29
Analytic binding isotherms describing competitive interactions of a protein ligand with specific and nonspecific sites on the same DNA oligomer. Biophys J (2001) 1.28
In an Escherichia coli coupled transcription-translation system, expression of the osmoregulated gene proU is stimulated at elevated potassium concentrations and by an extract from cells grown at high osmolality. J Biol Chem (1989) 1.28
Intermediates in the formation of the open complex by RNA polymerase holoenzyme containing the sigma factor sigma 32 at the groE promoter. J Mol Biol (1989) 1.28
Importance of coulombic end effects on cation accumulation near oligoelectrolyte B-DNA: a demonstration using 23Na NMR. Biophys J (1995) 1.25
Variables affecting the selectivity and efficiency of retention of DNA fragments by E. coli RNA polymerase in the nitrocellulose-filter-binding assay. Gene (1981) 1.21
Grand canonical Monte Carlo molecular and thermodynamic predictions of ion effects on binding of an oligocation (L8+) to the center of DNA oligomers. Biophys J (1995) 1.21
Ions as regulators of protein-nucleic acid interactions in vitro and in vivo. Adv Biophys (1985) 1.17
Blood pressure determinants in living-related renal allograft donors and their recipients. Kidney Int (1987) 1.15
Mg NMR in DNA solutions: Dominance of site binding effects. Proc Natl Acad Sci U S A (1980) 1.15
Electrostatic effects on polynucleotide transitions. I. Behavior at neutral pH. Biopolymers (1967) 1.15
Herpesviruses in renal transplant patients. Transplantation (1973) 1.14
Correction of enzymatic deficiencies by renal transplantation: Fabry's disease. Surgery (1972) 1.13
Cooperative and anticooperative effects in binding of the first and second plasmid Osym operators to a LacI tetramer: evidence for contributions of non-operator DNA binding by wrapping and looping. J Mol Biol (1996) 1.12
Direct evidence for the preferential binding of Escherichia coli RNA polymerase holoenzyme to the ends of deoxyribonucleic acid restriction fragments. Biochemistry (1983) 1.11
Accumulation of 3-(N-morpholino)propanesulfonate by osmotically stressed Escherichia coli K-12. J Bacteriol (1989) 1.11
Characterization of rodlike RNA fragments. Biopolymers (1975) 1.10
Wrapping of flanking non-operator DNA in lac repressor-operator complexes: implications for DNA looping. J Mol Biol (1999) 1.09
23Na NMR relaxation study of the effects of conformation and base composition on the interactions of counterions with double-helical DNA. Biochemistry (1984) 1.09
Membranoproliferative glomerulonephritis. A prospective clinical trial of platelet-inhibitor therapy. N Engl J Med (1984) 1.08
Thermodynamic characterization of interactions of native bovine serum albumin with highly excluded (glycine betaine) and moderately accumulated (urea) solutes by a novel application of vapor pressure osmometry. Biochemistry (1996) 1.07
Competitive interactions of Co(NH3)6(3+) and Na+ with helical B-DNA probed by 59Co and 23Na NMR. Biochemistry (1987) 1.07
An immunological assessment of patients with anorexia nervosa. Am J Clin Nutr (1981) 1.07
On the cooperative binding of large ligands to a one-dimensional homogeneous lattice: the generalized three-state lattice model. Biopolymers (1989) 1.04
Compensating effects of opposing changes in putrescine (2+) and K+ concentrations on lac repressor-lac operator binding: in vitro thermodynamic analysis and in vivo relevance. J Mol Biol (1996) 1.03
The utility of serum albumin values in the nutritional assessment of hospitalized patients. Mayo Clin Proc (1982) 1.03
Measurement of binding constants for protein-DNA interactions by DNA-cellulose chromatography. Biochemistry (1977) 1.03
The risks of unilateral nephrectomy: status of kidney donors 10 to 20 years postoperatively. Mayo Clin Proc (1985) 1.03