Published in Nature on April 09, 2006
Understanding brain networks and brain organization. Phys Life Rev (2014) 7.82
Spatio-temporal correlations and visual signalling in a complete neuronal population. Nature (2008) 6.32
Neurophysiological and computational principles of cortical rhythms in cognition. Physiol Rev (2010) 5.24
Whole-brain functional imaging at cellular resolution using light-sheet microscopy. Nat Methods (2013) 5.09
Attention improves performance primarily by reducing interneuronal correlations. Nat Neurosci (2009) 5.03
Protein 3D structure computed from evolutionary sequence variation. PLoS One (2011) 4.71
Adaptive reconfiguration of fractal small-world human brain functional networks. Proc Natl Acad Sci U S A (2006) 4.58
Inferring the structure and dynamics of interactions in schooling fish. Proc Natl Acad Sci U S A (2011) 3.74
Statistical mechanics for natural flocks of birds. Proc Natl Acad Sci U S A (2012) 3.23
Spontaneous cortical activity reveals hallmarks of an optimal internal model of the environment. Science (2011) 2.74
Spontaneous events outline the realm of possible sensory responses in neocortical populations. Neuron (2009) 2.63
Collective dynamics in human and monkey sensorimotor cortex: predicting single neuron spikes. Nat Neurosci (2009) 2.61
How advances in neural recording affect data analysis. Nat Neurosci (2011) 2.53
Protein structure prediction from sequence variation. Nat Biotechnol (2012) 2.50
Information capacity and transmission are maximized in balanced cortical networks with neuronal avalanches. J Neurosci (2011) 2.29
A small world of neuronal synchrony. Cereb Cortex (2008) 2.28
Functional organization and population dynamics in the mouse primary auditory cortex. Nat Neurosci (2010) 2.26
Maximum entropy models for antibody diversity. Proc Natl Acad Sci U S A (2010) 2.23
Using the principle of entropy maximization to infer genetic interaction networks from gene expression patterns. Proc Natl Acad Sci U S A (2006) 2.21
An overview of Bayesian methods for neural spike train analysis. Comput Intell Neurosci (2013) 2.13
Natural stimuli evoke dynamic sequences of states in sensory cortical ensembles. Proc Natl Acad Sci U S A (2007) 2.11
Techniques for extracting single-trial activity patterns from large-scale neural recordings. Curr Opin Neurobiol (2007) 2.05
Comparison of recordings from microelectrode arrays and single electrodes in the visual cortex. J Neurosci (2007) 2.05
Cortical connectivity and sensory coding. Nature (2013) 2.00
Sparse coding and high-order correlations in fine-scale cortical networks. Nature (2010) 2.00
An introduction to critical points for biophysicists; observations of compositional heterogeneity in lipid membranes. Biochim Biophys Acta (2008) 1.97
Dimensionality reduction for large-scale neural recordings. Nat Neurosci (2014) 1.85
Python for large-scale electrophysiology. Front Neuroinform (2009) 1.85
A toolbox for the fast information analysis of multiple-site LFP, EEG and spike train recordings. BMC Neurosci (2009) 1.83
A fast and simple population code for orientation in primate V1. J Neurosci (2012) 1.82
Origin of correlated activity between parasol retinal ganglion cells. Nat Neurosci (2008) 1.77
A new look at state-space models for neural data. J Comput Neurosci (2009) 1.69
The structure of large-scale synchronized firing in primate retina. J Neurosci (2009) 1.68
A reservoir of time constants for memory traces in cortical neurons. Nat Neurosci (2011) 1.66
Mapping a complete neural population in the retina. J Neurosci (2012) 1.64
Collective behavior in the spatial spreading of obesity. Sci Rep (2012) 1.51
Pairwise maximum entropy models for studying large biological systems: when they can work and when they can't. PLoS Comput Biol (2009) 1.50
Synchrony of thalamocortical inputs maximizes cortical reliability. Science (2010) 1.49
Bayesian inference of functional connectivity and network structure from spikes. IEEE Trans Neural Syst Rehabil Eng (2008) 1.48
Optimal population coding by noisy spiking neurons. Proc Natl Acad Sci U S A (2010) 1.48
Data-driven significance estimation for precise spike correlation. J Neurophysiol (2009) 1.48
Synchronicity, instant messaging, and performance among financial traders. Proc Natl Acad Sci U S A (2011) 1.44
Inferring functional connections between neurons. Curr Opin Neurobiol (2008) 1.41
Physical principles for scalable neural recording. Front Comput Neurosci (2013) 1.40
Being critical of criticality in the brain. Front Physiol (2012) 1.38
Thalamic synchrony and the adaptive gating of information flow to cortex. Nat Neurosci (2010) 1.36
Sparse low-order interaction network underlies a highly correlated and learnable neural population code. Proc Natl Acad Sci U S A (2011) 1.35
Efficient network reconstruction from dynamical cascades identifies small-world topology of neuronal avalanches. PLoS Comput Biol (2009) 1.31
Inferring species interactions in tropical forests. Proc Natl Acad Sci U S A (2009) 1.31
Extraction of Network Topology From Multi-Electrode Recordings: Is there a Small-World Effect? Front Comput Neurosci (2011) 1.30
Circuit topology for synchronizing neurons in spontaneously active networks. Proc Natl Acad Sci U S A (2010) 1.30
Fast, scalable, Bayesian spike identification for multi-electrode arrays. PLoS One (2011) 1.27
Identifying functional connectivity in large-scale neural ensemble recordings: a multiscale data mining approach. Neural Comput (2009) 1.23
Searching for collective behavior in a large network of sensory neurons. PLoS Comput Biol (2014) 1.23
Impact of neuronal properties on network coding: roles of spike initiation dynamics and robust synchrony transfer. Neuron (2013) 1.22
Protein signaling networks from single cell fluctuations and information theory profiling. Biophys J (2011) 1.21
Distributed fading memory for stimulus properties in the primary visual cortex. PLoS Biol (2009) 1.21
Modeling the impact of common noise inputs on the network activity of retinal ganglion cells. J Comput Neurosci (2011) 1.20
Neuronal couplings between retinal ganglion cells inferred by efficient inverse statistical physics methods. Proc Natl Acad Sci U S A (2009) 1.20
Approaches to Information-Theoretic Analysis of Neural Activity. Biol Theory (2006) 1.18
Statistical mechanics of letters in words. Phys Rev E Stat Nonlin Soft Matter Phys (2010) 1.18
NeuroXidence: reliable and efficient analysis of an excess or deficiency of joint-spike events. J Comput Neurosci (2008) 1.18
Mechanism-independent method for predicting response to multidrug combinations in bacteria. Proc Natl Acad Sci U S A (2012) 1.17
Collective behaviour without collective order in wild swarms of midges. PLoS Comput Biol (2014) 1.17
Synchronized firing in the retina. Curr Opin Neurobiol (2008) 1.16
Population coding by electrosensory neurons. J Neurophysiol (2008) 1.15
Columnar connectivity and laminar processing in cat primary auditory cortex. PLoS One (2010) 1.15
The diminishing role of hubs in dynamical processes on complex networks. J R Soc Interface (2013) 1.15
Correlated firing among major ganglion cell types in primate retina. J Physiol (2010) 1.14
Timing precision in population coding of natural scenes in the early visual system. PLoS Biol (2008) 1.14
Population rate dynamics and multineuron firing patterns in sensory cortex. J Neurosci (2012) 1.13
Inductive game theory and the dynamics of animal conflict. PLoS Comput Biol (2010) 1.13
Social interactions dominate speed control in poising natural flocks near criticality. Proc Natl Acad Sci U S A (2014) 1.13
Convergence of logic of cellular regulation in different premalignant cells by an information theoretic approach. BMC Syst Biol (2011) 1.13
A discrete time neural network model with spiking neurons. Rigorous results on the spontaneous dynamics. J Math Biol (2007) 1.12
Phylogenetic profiles reveal evolutionary relationships within the "twilight zone" of sequence similarity. Proc Natl Acad Sci U S A (2008) 1.11
Python for information theoretic analysis of neural data. Front Neuroinform (2009) 1.10
Gap junctions between striatal fast-spiking interneurons regulate spiking activity and synchronization as a function of cortical activity. J Neurosci (2009) 1.08
Scale invariance in the dynamics of spontaneous behavior. Proc Natl Acad Sci U S A (2012) 1.08
CuBIC: cumulant based inference of higher-order correlations in massively parallel spike trains. J Comput Neurosci (2009) 1.07
Synergy from silence in a combinatorial neural code. J Neurosci (2011) 1.06
Signatures of synchrony in pairwise count correlations. Front Comput Neurosci (2010) 1.06
Homological scaffolds of brain functional networks. J R Soc Interface (2014) 1.06
Hierarchical process memory: memory as an integral component of information processing. Trends Cogn Sci (2015) 1.06
Analyzing the activity of large populations of neurons: how tractable is the problem? Curr Opin Neurobiol (2007) 1.05
The neural basis for combinatorial coding in a cortical population response. J Neurosci (2008) 1.05
A neural substrate in the human hippocampus for linking successive events. Proc Natl Acad Sci U S A (2010) 1.05
Statistical inference for assessing functional connectivity of neuronal ensembles with sparse spiking data. IEEE Trans Neural Syst Rehabil Eng (2010) 1.04
From principal component to direct coupling analysis of coevolution in proteins: low-eigenvalue modes are needed for structure prediction. PLoS Comput Biol (2013) 1.03
Detecting pairwise correlations in spike trains: an objective comparison of methods and application to the study of retinal waves. J Neurosci (2014) 1.03
Single neuron firing properties impact correlation-based population coding. J Neurosci (2012) 1.03
Pairwise and higher-order correlations among drug-resistance mutations in HIV-1 subtype B protease. BMC Bioinformatics (2009) 1.02
Competing Neural Ensembles in Motor Cortex Gate Goal-Directed Motor Output. Neuron (2015) 1.02
Universal organization of resting brain activity at the thermodynamic critical point. Front Syst Neurosci (2013) 1.02
State-space analysis of time-varying higher-order spike correlation for multiple neural spike train data. PLoS Comput Biol (2012) 1.01
Default activity patterns at the neocortical microcircuit level. Front Integr Neurosci (2012) 1.01
A pairwise maximum entropy model accurately describes resting-state human brain networks. Nat Commun (2013) 1.00
The effects of pooling on spike train correlations. Front Neurosci (2011) 0.99
Network adaptation improves temporal representation of naturalistic stimuli in Drosophila eye: I dynamics. PLoS One (2009) 0.99
Searching for simplicity in the analysis of neurons and behavior. Proc Natl Acad Sci U S A (2011) 0.99
Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci U S A (1998) 192.97
Network biology: understanding the cell's functional organization. Nat Rev Genet (2004) 36.62
From molecular to modular cell biology. Nature (1999) 23.51
Neural networks and physical systems with emergent collective computational abilities. Proc Natl Acad Sci U S A (1982) 20.85
Singular value decomposition for genome-wide expression data processing and modeling. Proc Natl Acad Sci U S A (2000) 18.42
Dynamics of ongoing activity: explanation of the large variability in evoked cortical responses. Science (1996) 10.16
Neuronal population coding of movement direction. Science (1986) 8.79
Correlated neuronal discharge rate and its implications for psychophysical performance. Nature (1994) 6.73
Neuronal spike trains and stochastic point processes. II. Simultaneous spike trains. Biophys J (1967) 5.88
The effect of correlated variability on the accuracy of a population code. Neural Comput (1999) 4.63
Synaptic modification by correlated activity: Hebb's postulate revisited. Annu Rev Neurosci (2001) 4.60
Spike synchronization and rate modulation differentially involved in motor cortical function. Science (1997) 4.40
Correlated firing in macaque visual area MT: time scales and relationship to behavior. J Neurosci (2001) 3.80
Dynamic modeling of gene expression data. Proc Natl Acad Sci U S A (2001) 3.24
Computing with neural circuits: a model. Science (1986) 3.23
Redundancy in the population code of the retina. Neuron (2005) 3.02
Adaptation of retinal processing to image contrast and spatial scale. Nature (1997) 2.92
Recording spikes from a large fraction of the ganglion cells in a retinal patch. Nat Neurosci (2004) 2.90
Dynamic predictive coding by the retina. Nature (2005) 2.89
Multi-neuronal signals from the retina: acquisition and analysis. J Neurosci Methods (1994) 2.87
Network information and connected correlations. Phys Rev Lett (2003) 2.81
Concerted signaling by retinal ganglion cells. Science (1995) 2.78
Coding of visual information by precisely correlated spikes in the lateral geniculate nucleus. Nat Neurosci (1998) 2.33
Multineuronal firing patterns in the signal from eye to brain. Neuron (2003) 2.07
Selective adaptation in networks of cortical neurons. J Neurosci (2003) 2.06
Conditions for versatile learning, Helmholtz's unconscious inference, and the task of perception. Vision Res (1990) 2.04
Information about movement direction obtained from synchronous activity of motor cortical neurons. Proc Natl Acad Sci U S A (1998) 1.97
Unitary events in multiple single-neuron spiking activity: I. Detection and significance. Neural Comput (2002) 1.89
Fidelity of the ensemble code for visual motion in primate retina. J Neurophysiol (2004) 1.88
Neural coding: higher-order temporal patterns in the neurostatistics of cell assemblies. Neural Comput (2000) 1.71
Nonlinear population codes. Neural Comput (2004) 1.40
Probing the limits to positional information. Cell (2007) 6.23
Stability and nuclear dynamics of the bicoid morphogen gradient. Cell (2007) 5.31
Diffusion and scaling during early embryonic pattern formation. Proc Natl Acad Sci U S A (2005) 3.46
Dimensionality and dynamics in the behavior of C. elegans. PLoS Comput Biol (2008) 3.40
Redundancy in the population code of the retina. Neuron (2005) 3.02
Recording spikes from a large fraction of the ganglion cells in a retinal patch. Nat Neurosci (2004) 2.90
Network information and connected correlations. Phys Rev Lett (2003) 2.81
General properties of transcriptional time series in Escherichia coli. Nat Genet (2011) 2.76
Synergy, redundancy, and independence in population codes. J Neurosci (2003) 2.68
Information-based clustering. Proc Natl Acad Sci U S A (2005) 2.57
Information flow and optimization in transcriptional regulation. Proc Natl Acad Sci U S A (2008) 2.55
Analyzing neural responses to natural signals: maximally informative dimensions. Neural Comput (2004) 2.55
A sensory source for motor variation. Nature (2005) 2.43
Maximum entropy models for antibody diversity. Proc Natl Acad Sci U S A (2010) 2.23
Chronic inflammation is associated with low physical function in older adults across multiple comorbidities. J Gerontol A Biol Sci Med Sci (2009) 2.02
Selectivity for multiple stimulus features in retinal ganglion cells. J Neurophysiol (2006) 1.81
Effect of exercise intensity on abdominal fat loss during calorie restriction in overweight and obese postmenopausal women: a randomized, controlled trial. Am J Clin Nutr (2009) 1.77
Synchronized firing among retinal ganglion cells signals motion reversal. Neuron (2007) 1.71
Computation in a single neuron: Hodgkin and Huxley revisited. Neural Comput (2003) 1.68
Mapping a complete neural population in the retina. J Neurosci (2012) 1.64
Time course of information about motion direction in visual area MT of macaque monkeys. J Neurosci (2004) 1.63
How silent is the brain: is there a "dark matter" problem in neuroscience? J Comp Physiol A Neuroethol Sens Neural Behav Physiol (2006) 1.62
Entropy and information in neural spike trains: progress on the sampling problem. Phys Rev E Stat Nonlin Soft Matter Phys (2004) 1.57
The role of input noise in transcriptional regulation. PLoS One (2008) 1.54
Functional organization of ganglion cells in the salamander retina. J Neurophysiol (2005) 1.53
Information capacity of genetic regulatory elements. Phys Rev E Stat Nonlin Soft Matter Phys (2008) 1.40
Sparse low-order interaction network underlies a highly correlated and learnable neural population code. Proc Natl Acad Sci U S A (2011) 1.35
Neural coding of natural stimuli: information at sub-millisecond resolution. PLoS Comput Biol (2008) 1.29
How much the eye tells the brain. Curr Biol (2006) 1.29
Detection and prediction of periodic patterns by the retina. Nat Neurosci (2007) 1.26
Optimizing information flow in small genetic networks. Phys Rev E Stat Nonlin Soft Matter Phys (2009) 1.23
Optimizing information flow in small genetic networks. II. Feed-forward interactions. Phys Rev E Stat Nonlin Soft Matter Phys (2010) 1.23
Statistical mechanics of letters in words. Phys Rev E Stat Nonlin Soft Matter Phys (2010) 1.18
From modes to movement in the behavior of Caenorhabditis elegans. PLoS One (2010) 1.15
A method for spike sorting and detection based on wavelet packets and Shannon's mutual information. J Neurosci Methods (2002) 1.15
Sophisticated temporal pattern recognition in retinal ganglion cells. J Neurophysiol (2008) 1.15
A test of metabolically efficient coding in the retina. Network (2002) 1.14
Emergence of long timescales and stereotyped behaviors in Caenorhabditis elegans. Proc Natl Acad Sci U S A (2011) 1.13
Morphological characterization of in vitro neuronal networks. Phys Rev E Stat Nonlin Soft Matter Phys (2002) 1.13
The architecture of functional interaction networks in the retina. J Neurosci (2011) 1.12
The information content of receptive fields. Neuron (2003) 1.10
Time course of precision in smooth-pursuit eye movements of monkeys. J Neurosci (2007) 1.07
Synergy from silence in a combinatorial neural code. J Neurosci (2011) 1.06
The neural basis for combinatorial coding in a cortical population response. J Neurosci (2008) 1.05
Positional information, in bits. Proc Natl Acad Sci U S A (2013) 1.03
Weight regain is related to decreases in physical activity during weight loss. Med Sci Sports Exerc (2008) 1.01
Self-regulated complexity in cultured neuronal networks. Phys Rev Lett (2004) 1.01
Morphogenesis at criticality. Proc Natl Acad Sci U S A (2014) 1.00
Searching for simplicity in the analysis of neurons and behavior. Proc Natl Acad Sci U S A (2011) 0.99
Diffusion, dimensionality, and noise in transcriptional regulation. Phys Rev E Stat Nonlin Soft Matter Phys (2009) 0.98
Optimizing information flow in small genetic networks. III. A self-interacting gene. Phys Rev E Stat Nonlin Soft Matter Phys (2012) 0.98
Statistical thermodynamics of natural images. Phys Rev Lett (2013) 0.97
Quantitative neuromuscular ultrasound in the intensive care unit. Muscle Nerve (2012) 0.95
Neural decision boundaries for maximal information transmission. PLoS One (2007) 0.94
Stimulus-dependent maximum entropy models of neural population codes. PLoS Comput Biol (2013) 0.94
Role of eye movements in the retinal code for a size discrimination task. J Neurophysiol (2007) 0.92
Occam factors and model independent Bayesian learning of continuous distributions. Phys Rev E Stat Nonlin Soft Matter Phys (2002) 0.92
Maximally informative "stimulus energies" in the analysis of neural responses to natural signals. PLoS One (2013) 0.91
Environmental scan of anal cancer screening practices: worldwide survey results. Cancer Med (2014) 0.90
Fine spatial information represented in a population of retinal ganglion cells. J Neurosci (2011) 0.90
Piezoelectric nanoribbons for monitoring cellular deformations. Nat Nanotechnol (2012) 0.88
An oscillatory circuit underlying the detection of disruptions in temporally-periodic patterns. Network (2009) 0.86
Perceived difficulty, importance, and satisfaction with physical function in COPD patients. Health Qual Life Outcomes (2004) 0.85
Identifying functional bases for multidimensional neural computations. Neural Comput (2013) 0.84
Alert response to motion onset in the retina. J Neurosci (2013) 0.84
How many clusters? An information-theoretic perspective. Neural Comput (2004) 0.83
Statistical properties of spike trains: universal and stimulus-dependent aspects. Phys Rev E Stat Nonlin Soft Matter Phys (2002) 0.83
Modeling of synchronized bursting events: the importance on inhomogeneity. Neural Comput (2004) 0.83
Low error discrimination using a correlated population code. J Neurophysiol (2012) 0.82
Coding "what" and "when" in the Archer fish retina. PLoS Comput Biol (2010) 0.81
Predictive saccade in the absence of smooth pursuit: interception of moving targets in the archer fish. J Exp Biol (2012) 0.81
Orientation saliency without visual cortex and target selection in archer fish. Proc Natl Acad Sci U S A (2010) 0.80
The Reconditioning Exercise and Chronic Obstructive Pulmonary Disease Trial II (REACT II): rationale and study design for a clinical trial of physical activity among individuals with chronic obstructive pulmonary disease. Contemp Clin Trials (2006) 0.80
Inhibition of return in the archer fish. Nat Commun (2013) 0.79
Visual receptive field properties of cells in the optic tectum of the archer fish. J Neurophysiol (2013) 0.78
High-grade anal intraepithelial neoplasia among HIV-1-infected men screening for a multicenter clinical trial of a human papillomavirus vaccine. HIV Clin Trials (2013) 0.78
Retinal metric: a stimulus distance measure derived from population neural responses. Phys Rev Lett (2013) 0.78
Archer fish fast hunting maneuver may be guided by directionally selective retinal ganglion cells. Eur J Neurosci (2012) 0.78
Spike triggered covariance in strongly correlated gaussian stimuli. PLoS Comput Biol (2013) 0.78
Visual acuity in the archerfish: behavior, anatomy, and neurophysiology. J Vis (2012) 0.76
The metabolic demand of golf in patients with heart disease and in healthy adults. J Cardiopulm Rehabil (2002) 0.76
The natural variation of a neural code. PLoS One (2012) 0.75
Adaptive colour contrast coding in the salamander retina efficiently matches natural scene statistics. PLoS One (2013) 0.75
Complexity of generic biochemical circuits: topology versus strength of interactions. Phys Biol (2016) 0.75
QnAs with William Bialek. Proc Natl Acad Sci U S A (2013) 0.75
Relationship Between Self-Report and Performance Based Measures of Physical Function Following an ICU Stay: 986 Board #302 June 1, 2: 00 PM - 3: 30 PM. Med Sci Sports Exerc (2016) 0.75
Correction: A randomized controlled trial of nitrate supplementation in well-trained middle and older-aged adults. PLoS One (2020) 0.75
Measuring and tracking eye movements of a behaving archer fish by real-time stereo vision. J Neurosci Methods (2009) 0.75