Published in J Comput Neurosci on August 01, 2009
Whole-brain functional imaging at cellular resolution using light-sheet microscopy. Nat Methods (2013) 5.09
Measuring and interpreting neuronal correlations. Nat Neurosci (2011) 4.10
How advances in neural recording affect data analysis. Nat Neurosci (2011) 2.53
Fast nonnegative deconvolution for spike train inference from population calcium imaging. J Neurophysiol (2010) 2.51
An overview of Bayesian methods for neural spike train analysis. Comput Intell Neurosci (2013) 2.13
Dimensionality reduction for large-scale neural recordings. Nat Neurosci (2014) 1.85
Closed-loop and activity-guided optogenetic control. Neuron (2015) 1.42
Model-based decoding, information estimation, and change-point detection techniques for multineuron spike trains. Neural Comput (2010) 1.30
Extraction of Network Topology From Multi-Electrode Recordings: Is there a Small-World Effect? Front Comput Neurosci (2011) 1.30
Assimilating seizure dynamics. PLoS Comput Biol (2010) 1.23
Modeling the impact of common noise inputs on the network activity of retinal ganglion cells. J Comput Neurosci (2011) 1.20
Impact of network structure and cellular response on spike time correlations. PLoS Comput Biol (2012) 1.12
Population decoding of motor cortical activity using a generalized linear model with hidden states. J Neurosci Methods (2010) 1.04
Temporal precision in the visual pathway through the interplay of excitation and stimulus-driven suppression. J Neurosci (2011) 1.03
Inferring synaptic inputs given a noisy voltage trace via sequential Monte Carlo methods. J Comput Neurosci (2011) 0.95
Efficient Markov chain Monte Carlo methods for decoding neural spike trains. Neural Comput (2010) 0.95
Incorporating naturalistic correlation structure improves spectrogram reconstruction from neuronal activity in the songbird auditory midbrain. J Neurosci (2011) 0.95
Attention stabilizes the shared gain of V4 populations. Elife (2015) 0.92
Designing optimal stimuli to control neuronal spike timing. J Neurophysiol (2011) 0.88
Copula regression analysis of simultaneously recorded frontal eye field and inferotemporal spiking activity during object-based working memory. J Neurosci (2015) 0.86
Two-photon calcium imaging during fictive navigation in virtual environments. Front Neural Circuits (2013) 0.86
Fast inference in generalized linear models via expected log-likelihoods. J Comput Neurosci (2013) 0.83
Inference and Decoding of Motor Cortex Low-Dimensional Dynamics via Latent State-Space Models. IEEE Trans Neural Syst Rehabil Eng (2015) 0.83
Coupling Time Decoding and Trajectory Decoding using a Target-Included Model in the Motor Cortex. Neurocomputing (2012) 0.81
Single-unit activity, threshold crossings, and local field potentials in motor cortex differentially encode reach kinematics. J Neurophysiol (2015) 0.80
EMG prediction from motor cortical recordings via a nonnegative point-process filter. IEEE Trans Biomed Eng (2011) 0.80
Optimal experimental design for sampling voltage on dendritic trees in the low-SNR regime. J Comput Neurosci (2011) 0.79
Applying the multivariate time-rescaling theorem to neural population models. Neural Comput (2011) 0.79
The emergence of single neurons in clinical neurology. Neuron (2015) 0.79
Fast Kalman filtering on quasilinear dendritic trees. J Comput Neurosci (2009) 0.78
The relationship between optimal and biologically plausible decoding of stimulus velocity in the retina. J Opt Soc Am A Opt Image Sci Vis (2009) 0.78
Injection of fully-defined signal mixtures: a novel high-throughput tool to study neuronal encoding and computations. PLoS One (2014) 0.78
Temporal variability of spectro-temporal receptive fields in the anesthetized auditory cortex. Front Comput Neurosci (2014) 0.77
Revealing unobserved factors underlying cortical activity using a rectified latent variable model applied to neural population recordings. J Neurophysiol (2016) 0.76
Control strategies for underactuated neural ensembles driven by optogenetic stimulation. Front Neural Circuits (2013) 0.76
Analysis of the dynamics of temporal relationships of neural activities using optical imaging data. J Comput Neurosci (2016) 0.75
A state space approach for piecewise-linear recurrent neural networks for identifying computational dynamics from neural measurements. PLoS Comput Biol (2017) 0.75
A Statistical Model for In Vivo Neuronal Dynamics. PLoS One (2015) 0.75
A point-process response model for spike trains from single neurons in neural circuits under optogenetic stimulation. Stat Med (2015) 0.75
Rapid classification of hippocampal replay content for real-time applications. J Neurophysiol (2016) 0.75
Model-based spike sorting with a mixture of drifting t-distributions. J Neurosci Methods (2017) 0.75
From point process observations to collective neural dynamics: nonlinear Hawkes process GLMs, low-dimensional dynamics and coarse graining. J Physiol Paris (2017) 0.75
Fast maximum likelihood estimation using continuous-time neural point process models. J Comput Neurosci (2015) 0.75
Consistent estimation of complete neuronal connectivity in large neuronal populations using sparse "shotgun" neuronal activity sampling. J Comput Neurosci (2016) 0.75
A latent low-dimensional common input drives a pool of motor neurons: a probabilistic latent state-space model. J Neurophysiol (2017) 0.75
Flexible models for spike count data with both over- and under- dispersion. J Comput Neurosci (2016) 0.75
Weak pairwise correlations imply strongly correlated network states in a neural population. Nature (2006) 9.18
Functional imaging with cellular resolution reveals precise micro-architecture in visual cortex. Nature (2005) 9.02
Balanced inhibition underlies tuning and sharpens spike timing in auditory cortex. Nature (2003) 6.98
Spatio-temporal correlations and visual signalling in a complete neuronal population. Nature (2008) 6.32
A point process framework for relating neural spiking activity to spiking history, neural ensemble, and extrinsic covariate effects. J Neurophysiol (2004) 6.20
The structure of multi-neuron firing patterns in primate retina. J Neurosci (2006) 4.49
Multiple neural spike train data analysis: state-of-the-art and future challenges. Nat Neurosci (2004) 4.29
Chronic, multisite, multielectrode recordings in macaque monkeys. Proc Natl Acad Sci U S A (2003) 4.24
Attractor dynamics of network UP states in the neocortex. Nature (2003) 4.18
Connecting cortex to machines: recent advances in brain interfaces. Nat Neurosci (2002) 3.83
Bayesian population decoding of motor cortical activity using a Kalman filter. Neural Comput (2006) 3.63
Maximum likelihood estimation of cascade point-process neural encoding models. Network (2004) 3.55
Interpreting neuronal population activity by reconstruction: unified framework with application to hippocampal place cells. J Neurophysiol (1998) 3.35
A statistical paradigm for neural spike train decoding applied to position prediction from ensemble firing patterns of rat hippocampal place cells. J Neurosci (1998) 3.20
SLM Microscopy: Scanless Two-Photon Imaging and Photostimulation with Spatial Light Modulators. Front Neural Circuits (2008) 3.01
A unifying review of linear gaussian models. Neural Comput (1999) 2.99
Statistical issues in the analysis of neuronal data. J Neurophysiol (2005) 2.85
Direction selectivity of excitation and inhibition in simple cells of the cat primary visual cortex. Neuron (2005) 2.81
Dynamic analysis of learning in behavioral experiments. J Neurosci (2004) 2.58
Estimating a state-space model from point process observations. Neural Comput (2003) 2.27
The spine neck filters membrane potentials. Proc Natl Acad Sci U S A (2006) 2.23
Decoding visual information from a population of retinal ganglion cells. J Neurophysiol (1997) 2.19
Network variability limits stimulus-evoked spike timing precision in retinal ganglion cells. Neuron (2006) 2.13
Natural stimuli evoke dynamic sequences of states in sensory cortical ensembles. Proc Natl Acad Sci U S A (2007) 2.11
Multineuronal firing patterns in the signal from eye to brain. Neuron (2003) 2.07
Dynamic analysis of neural encoding by point process adaptive filtering. Neural Comput (2004) 2.07
Feedforward excitation and inhibition evoke dual modes of firing in the cat's visual thalamus during naturalistic viewing. Neuron (2007) 2.01
Statistical smoothing of neuronal data. Network (2003) 1.89
Recursive bayesian decoding of motor cortical signals by particle filtering. J Neurophysiol (2004) 1.87
Origin of correlated activity between parasol retinal ganglion cells. Nat Neurosci (2008) 1.77
Neural coding: higher-order temporal patterns in the neurostatistics of cell assemblies. Neural Comput (2000) 1.71
Mixture of trajectory models for neural decoding of goal-directed movements. J Neurophysiol (2007) 1.70
The structure of large-scale synchronized firing in primate retina. J Neurosci (2009) 1.68
Efficient estimation of detailed single-neuron models. J Neurophysiol (2006) 1.66
Analysis of between-trial and within-trial neural spiking dynamics. J Neurophysiol (2008) 1.60
Common-input models for multiple neural spike-train data. Network (2007) 1.51
Detecting neural-state transitions using hidden Markov models for motor cortical prostheses. J Neurophysiol (2008) 1.50
Superlinear population encoding of dynamic hand trajectory in primary motor cortex. J Neurosci (2004) 1.49
Maximum likelihood identification of neural point process systems. Biol Cybern (1988) 1.40
A state-space analysis for reconstruction of goal-directed movements using neural signals. Neural Comput (2006) 1.38
Sequential optimal design of neurophysiology experiments. Neural Comput (2009) 1.32
Model-based decoding, information estimation, and change-point detection techniques for multineuron spike trains. Neural Comput (2010) 1.30
An analysis of neural receptive field plasticity by point process adaptive filtering. Proc Natl Acad Sci U S A (2001) 1.27
Analysis and design of behavioral experiments to characterize population learning. J Neurophysiol (2004) 1.26
Statistical encoding model for a primary motor cortical brain-machine interface. IEEE Trans Biomed Eng (2005) 1.25
Construction of point process adaptive filter algorithms for neural systems using sequential Monte Carlo methods. IEEE Trans Biomed Eng (2007) 1.25
Contrasting patterns of receptive field plasticity in the hippocampus and the entorhinal cortex: an adaptive filtering approach. J Neurosci (2002) 1.24
Rethinking tuning: in vivo whole-cell recordings of the inferior colliculus in awake bats. J Neurosci (2007) 1.17
A mathematical framework for inferring connectivity in probabilistic neuronal networks. Math Biosci (2006) 1.12
Smoothing of, and parameter estimation from, noisy biophysical recordings. PLoS Comput Biol (2009) 1.11
Bilinear dynamical systems. Philos Trans R Soc Lond B Biol Sci (2005) 1.09
Cellular mechanisms for resolving phase ambiguity in the owl's inferior colliculus. Proc Natl Acad Sci U S A (2000) 0.97
Voltage-clamp measurement of visually-evoked conductances with whole-cell patch recordings in primary visual cortex. J Physiol Paris (1996) 0.96
Functional structure of the mitral cell dendritic tuft in the rat olfactory bulb. J Neurosci (2008) 0.95
Inferring synaptic inputs given a noisy voltage trace via sequential Monte Carlo methods. J Comput Neurosci (2011) 0.95
Behavioral and neurophysiological analyses of dynamic learning processes. Behav Cogn Neurosci Rev (2005) 0.94
Efficient computation of the maximum a posteriori path and parameter estimation in integrate-and-fire and more general state-space models. J Comput Neurosci (2009) 0.91
Spike sorting with hidden Markov models. J Neurosci Methods (2008) 0.91
Efficient, adaptive estimation of two-dimensional firing rate surfaces via Gaussian process methods. Network (2010) 0.84
Class of fast methods for processing irregularly sampled or otherwise inhomogeneous one-dimensional data. Phys Rev Lett (1995) 0.83
Fever with thrombocytopenia associated with a novel bunyavirus in China. N Engl J Med (2011) 13.18
Assemblathon 1: a competitive assessment of de novo short read assembly methods. Genome Res (2011) 8.38
Predicting overweight and obesity in adulthood from body mass index values in childhood and adolescence. Am J Clin Nutr (2002) 6.19
Kremen proteins are Dickkopf receptors that regulate Wnt/beta-catenin signalling. Nature (2002) 5.61
Gadd45a promotes epigenetic gene activation by repair-mediated DNA demethylation. Nature (2007) 5.54
Casein kinase 1 gamma couples Wnt receptor activation to cytoplasmic signal transduction. Nature (2005) 4.88
Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content. PLoS Genet (2009) 3.88
The Forkhead transcription factor Hcm1 regulates chromosome segregation genes and fills the S-phase gap in the transcriptional circuitry of the cell cycle. Genes Dev (2006) 3.58
Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nat Biotechnol (2011) 3.51
Control and characterization of individual grains and grain boundaries in graphene grown by chemical vapour deposition. Nat Mater (2011) 3.23
Treatment of pressure ulcers: a systematic review. JAMA (2008) 2.96
A genome-wide association study identifies two new lung cancer susceptibility loci at 13q12.12 and 22q12.2 in Han Chinese. Nat Genet (2011) 2.85
R-Spondin2 is a secreted activator of Wnt/beta-catenin signaling and is required for Xenopus myogenesis. Dev Cell (2004) 2.73
Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris. Genome Res (2005) 2.65
Differential connectivity and response dynamics of excitatory and inhibitory neurons in visual cortex. Nat Neurosci (2011) 2.64
Cellular uptake of functionalized carbon nanotubes is independent of functional group and cell type. Nat Nanotechnol (2007) 2.57
A vast repertoire of Dscam binding specificities arises from modular interactions of variable Ig domains. Cell (2007) 2.50
The effect of computerized physician order entry with clinical decision support on the rates of adverse drug events: a systematic review. J Gen Intern Med (2008) 2.46
Loss of function of def selectively up-regulates Delta113p53 expression to arrest expansion growth of digestive organs in zebrafish. Genes Dev (2005) 2.44
From neural development to cognition: unexpected roles for chromatin. Nat Rev Genet (2013) 2.42
TOS9 regulates white-opaque switching in Candida albicans. Eukaryot Cell (2006) 2.42
Homeodomain-mediated beta-catenin-dependent switching events dictate cell-lineage determination. Cell (2006) 2.40
Autophagy negatively regulates Wnt signalling by promoting Dishevelled degradation. Nat Cell Biol (2010) 2.37
NONCODEv4: exploring the world of long non-coding RNA genes. Nucleic Acids Res (2013) 2.37
Memristor-CMOS hybrid integrated circuits for reconfigurable logic. Nano Lett (2009) 2.35
Concurrent CIC mutations, IDH mutations, and 1p/19q loss distinguish oligodendrogliomas from other cancers. J Pathol (2011) 2.27
Genome-wide association analysis identifies new lung cancer susceptibility loci in never-smoking women in Asia. Nat Genet (2012) 2.26
Functionalized carbon nanotubes are non-cytotoxic and preserve the functionality of primary immune cells. Nano Lett (2006) 2.24
MAN1, an integral protein of the inner nuclear membrane, binds Smad2 and Smad3 and antagonizes transforming growth factor-beta signaling. Hum Mol Genet (2004) 2.10
Therapeutic potential of Nrf2 activators in streptozotocin-induced diabetic nephropathy. Diabetes (2011) 2.03
Levels of prenatal mercury exposure and their relationships to neonatal anthropometry in Wujiang City, China. Environ Pollut (2013) 2.01
The nature of the fourth bond in the ground state of C2: the quadruple bond conundrum. Chemistry (2014) 1.97
Gibberellin mobilizes distinct DELLA-dependent transcriptomes to regulate seed germination and floral development in Arabidopsis. Plant Physiol (2006) 1.91
Amelioration of sepsis by inhibiting sialidase-mediated disruption of the CD24-SiglecG interaction. Nat Biotechnol (2011) 1.91
Oral drug therapy for multiple neglected tropical diseases: a systematic review. JAMA (2007) 1.88
Expression of lymphocytes and lymphocyte subsets in patients with severe acute respiratory syndrome. Clin Infect Dis (2003) 1.84
Systematic review of HIV transmission between heterosexual serodiscordant couples where the HIV-positive partner is fully suppressed on antiretroviral therapy. PLoS One (2013) 1.79
MicroRNA-21 targets peroxisome proliferators-activated receptor-alpha in an autoregulatory loop to modulate flow-induced endothelial inflammation. Proc Natl Acad Sci U S A (2011) 1.77
Up-regulation of miR-21 mediates resistance to trastuzumab therapy for breast cancer. J Biol Chem (2011) 1.73
Pathogenesis of emerging severe fever with thrombocytopenia syndrome virus in C57/BL6 mouse model. Proc Natl Acad Sci U S A (2012) 1.71
Increased frequency of circulating follicular helper T cells in patients with rheumatoid arthritis. Clin Dev Immunol (2012) 1.70
Gene expression in relation to exhaled nitric oxide identifies novel asthma phenotypes with unique biomolecular pathways. Am J Respir Crit Care Med (2014) 1.69
Dscam2 mediates axonal tiling in the Drosophila visual system. Nature (2007) 1.66
DNA methyltransferase 3B (DNMT3B) mutations in ICF syndrome lead to altered epigenetic modifications and aberrant expression of genes regulating development, neurogenesis and immune function. Hum Mol Genet (2007) 1.65
Quadruple bonding in C2 and analogous eight-valence electron species. Nat Chem (2012) 1.62
Characterization of a sub-family of Arabidopsis genes with the SPX domain reveals their diverse functions in plant tolerance to phosphorus starvation. Plant J (2008) 1.60
The Wnt signaling regulator R-spondin 3 promotes angioblast and vascular development. Development (2008) 1.59
PD-1 upregulation is associated with HBV-specific T cell dysfunction in chronic hepatitis B patients. Mol Immunol (2007) 1.58
Meta-analysis of human lung cancer microRNA expression profiling studies comparing cancer tissues with normal tissues. J Exp Clin Cancer Res (2012) 1.55
Vapor-phase self-assembled monolayer for improved mold release in nanoimprint lithography. Langmuir (2005) 1.55
An efficient algorithm for energy gradients and orbital optimization in valence bond theory. J Comput Chem (2009) 1.52
Circuit fabrication at 17 nm half-pitch by nanoimprint lithography. Nano Lett (2006) 1.51
Association analyses identify multiple new lung cancer susceptibility loci and their interactions with smoking in the Chinese population. Nat Genet (2012) 1.49
The Min oscillator uses MinD-dependent conformational changes in MinE to spatially regulate cytokinesis. Cell (2011) 1.49
Metabolomics reveals signature of mitochondrial dysfunction in diabetic kidney disease. J Am Soc Nephrol (2013) 1.49
A double S shape provides the structural basis for the extraordinary binding specificity of Dscam isoforms. Cell (2008) 1.48
Surgical safety checklist: implementation in an ambulatory surgical facility. Can J Anaesth (2013) 1.48
Safety and viability of microencapsulated human islets transplanted into diabetic humans. Diabetes Care (2009) 1.48
Levels of vasoactive intestinal peptide, cholecystokinin and calcitonin gene-related peptide in plasma and jejunum of rats following traumatic brain injury and underlying significance in gastrointestinal dysfunction. World J Gastroenterol (2004) 1.48
Allicin, a major component of garlic, inhibits apoptosis in vital organs in rats with trauma/hemorrhagic shock. Crit Care Med (2008) 1.47
Quantitative analysis of vascular endothelial growth factor, microvascular density and their clinicopathologic features in human hepatocellular carcinoma. Hepatobiliary Pancreat Dis Int (2005) 1.47
Sarcophaga (Hoa)flexuosa Ho (Diptera: Sarcophagidae): association of sexes using morphological and molecular approaches, and a redefinition of Hoa Rohdendorf. Zootaxa (2013) 1.46
Development of the personalized criteria for microscopic review following four different series of hematology analyzer in a Chinese large scale hospital. Chin Med J (Engl) (2010) 1.45
Genome-wide discovery and characterization of maize long non-coding RNAs. Genome Biol (2014) 1.45
MicroRNA-based therapeutics for cancer. BioDrugs (2009) 1.45
MiR-223 suppresses cell proliferation by targeting IGF-1R. PLoS One (2011) 1.41
Plaque volume compression ratio, a novel biomechanical index, is independently associated with ischemic cerebrovascular events. J Hypertens (2009) 1.41
Parkinson's disease associated with myasthenia gravis and rheumatoid arthritis. Neurol Sci (2014) 1.41
Mitogen-activated protein kinases regulate susceptibility to ventilator-induced lung injury. PLoS One (2008) 1.41
Imaging action potentials with calcium indicators. Cold Spring Harb Protoc (2011) 1.40
The negative prognostic impact of derivative 9 deletions in patients who received hydroxyurea treatment for chronic myelogenous leukemia in the chronic phase. Onkologie (2008) 1.39
Improvements of cardiac electrophysiologic stability and ventricular fibrillation threshold in rats with myocardial infarction treated with cardiac stem cells. Crit Care Med (2011) 1.39
Association between occult hepatitis B infection and the risk of hepatocellular carcinoma: a meta-analysis. Liver Int (2011) 1.39
Solitary large hepatocellular carcinoma: a specific subtype of hepatocellular carcinoma with good outcome after hepatic resection. Ann Surg (2009) 1.37
Rapid, repeated, and clustered loss of duplicate genes in allopolyploid plant populations of independent origin. Curr Biol (2012) 1.37
miR-133b regulates the MET proto-oncogene and inhibits the growth of colorectal cancer cells in vitro and in vivo. Cancer Biol Ther (2010) 1.37
Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping. Mol Ecol (2010) 1.37
GTP-independent rapid and slow endocytosis at a central synapse. Nat Neurosci (2007) 1.36
MiR-27 as a prognostic marker for breast cancer progression and patient survival. PLoS One (2012) 1.35
Circulating CD4+ CD25+ regulatory T cells correlate with chronic hepatitis B infection. Immunology (2007) 1.35
Undertreatment of cardiovascular risk factors among persons with diabetes in the United States. Diabetes Res Clin Pract (2006) 1.31
Repeat subtraction-mediated sequence capture from a complex genome. Plant J (2010) 1.31
Model-based decoding, information estimation, and change-point detection techniques for multineuron spike trains. Neural Comput (2010) 1.30
Flow activation of AMP-activated protein kinase in vascular endothelium leads to Krüppel-like factor 2 expression. Arterioscler Thromb Vasc Biol (2009) 1.30
Molecular evidence for natural hybridization in the mangrove fern genus Acrostichum. BMC Plant Biol (2013) 1.29
Hybrid nanoimprint-soft lithography with sub-15 nm resolution. Nano Lett (2009) 1.28
Frequency recognition based on canonical correlation analysis for SSVEP-based BCIs. IEEE Trans Biomed Eng (2007) 1.27
[Isolation, identification and characterization of SFTS bunyavirus from ticks collected on the surface of domestic animals]. Bing Du Xue Bao (2012) 1.26
Genic and nongenic contributions to natural variation of quantitative traits in maize. Genome Res (2012) 1.26
Double functionalization of carbon nanotubes for multimodal drug delivery. Chem Commun (Camb) (2006) 1.25
Ultrasmooth silver thin films deposited with a germanium nucleation layer. Nano Lett (2009) 1.25
The homologous putative GTPases Grn1p from fission yeast and the human GNL3L are required for growth and play a role in processing of nucleolar pre-rRNA. Mol Biol Cell (2005) 1.25
Modeling the impact of common noise inputs on the network activity of retinal ganglion cells. J Comput Neurosci (2011) 1.20
Financial Conflicts of Interest Checklist 2010 for clinical research studies. Open Med (2010) 1.19
Light-induced reversible formation of polymeric micelles. Angew Chem Int Ed Engl (2007) 1.19
Temsirolimus activates autophagy and ameliorates cardiomyopathy caused by lamin A/C gene mutation. Sci Transl Med (2012) 1.19
miR-150 promotes human breast cancer growth and malignant behavior by targeting the pro-apoptotic purinergic P2X7 receptor. PLoS One (2013) 1.18
Heterodyne detected nonlinear optical imaging in a lock-in free manner. J Biophotonics (2012) 1.18
XMVB: a program for ab initio nonorthogonal valence bond computations. J Comput Chem (2005) 1.18
Gaucher disease: alendronate disodium improves bone mineral density in adults receiving enzyme therapy. Blood (2004) 1.17