PubRank

David Posada

Author PubWeight™ 182.40‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 jModelTest: phylogenetic model averaging. Mol Biol Evol 2008 44.78
2 jModelTest 2: more models, new heuristics and parallel computing. Nat Methods 2012 27.83
3 ProtTest: selection of best-fit models of protein evolution. Bioinformatics 2005 19.16
4 RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 2010 9.49
5 ProtTest 3: fast selection of best-fit models of protein evolution. Bioinformatics 2011 8.68
6 Automated phylogenetic detection of recombination using a genetic algorithm. Mol Biol Evol 2006 5.94
7 ALTER: program-oriented conversion of DNA and protein alignments. Nucleic Acids Res 2010 5.32
8 GARD: a genetic algorithm for recombination detection. Bioinformatics 2006 4.88
9 Pharmacogenetic study of statin therapy and cholesterol reduction. JAMA 2004 4.47
10 The causes and consequences of HIV evolution. Nat Rev Genet 2004 4.34
11 An exact nonparametric method for inferring mosaic structure in sequence triplets. Genetics 2007 3.76
12 An evolutionary model-based algorithm for accurate phylogenetic breakpoint mapping and subtype prediction in HIV-1. PLoS Comput Biol 2009 3.11
13 Tree scanning: a method for using haplotype trees in phenotype/genotype association studies. Genetics 2004 1.87
14 Parallel evolution of the genetic code in arthropod mitochondrial genomes. PLoS Biol 2006 1.85
15 Phylogeographic history of the land snail Candidula unifasciata (Helicellinae, Stylommatophora): fragmentation, corridor migration, and secondary contact. Evolution 2002 1.62
16 A coalescent model of recombination hotspots. Genetics 2003 1.60
17 Phylogenetic models of molecular evolution: next-generation data, fit, and performance. J Mol Evol 2013 1.45
18 A comparison of phylogenetic network methods using computer simulation. PLoS One 2008 1.40
19 Recodon: coalescent simulation of coding DNA sequences with recombination, migration and demography. BMC Bioinformatics 2007 1.27
20 MtArt: a new model of amino acid replacement for Arthropoda. Mol Biol Evol 2006 1.27
21 Perkinsoide chabelardi n. gen., a protozoan parasite with an intermediate evolutionary position: possible cause of the decrease of sardine fisheries? Environ Microbiol 2006 1.26
22 The evolutionary value of recombination is constrained by genome modularity. PLoS Genet 2005 1.26
23 The effect of recombination on the reconstruction of ancestral sequences. Genetics 2010 1.25
24 Recombination estimation under complex evolutionary models with the coalescent composite-likelihood method. Mol Biol Evol 2006 1.23
25 Coalescent simulation of intracodon recombination. Genetics 2009 1.20
26 Analysing recombination in nucleotide sequences. Mol Ecol Resour 2011 1.18
27 Phylodynamics of HIV-1 from a phase III AIDS vaccine trial in Bangkok, Thailand. PLoS One 2011 1.11
28 Evidence for survival of Pleistocene climatic changes in Northern refugia by the land snail Trochoidea geyeri (Soós 1926) (Helicellinae, Stylommatophora). BMC Evol Biol 2003 1.10
29 Recombination favors the evolution of drug resistance in HIV-1 during antiretroviral therapy. Infect Genet Evol 2007 1.00
30 Using models of nucleotide evolution to build phylogenetic trees. Dev Comp Immunol 2005 1.00
31 Phylogenetic evidence for multiple sympatric ecological diversification in a marine snail. Evolution 2007 0.97
32 Phylogeography and diversification history of the day-gecko genus Phelsuma in the Seychelles islands. BMC Evol Biol 2013 0.96
33 GenDecoder: genetic code prediction for metazoan mitochondria. Nucleic Acids Res 2006 0.95
34 Characterization of phylogenetic networks with NetTest. BMC Bioinformatics 2010 0.95
35 Inverted replication of vertebrate mitochondria. Mol Biol Evol 2008 0.93
36 Ethnic differences in the adaptation rate of HIV gp120 from a vaccine trial. Retrovirology 2009 0.93
37 Identification of 3 phylogenetically related HIV-1 BG intersubtype circulating recombinant forms in Cuba. J Acquir Immune Defic Syndr 2007 0.92
38 Identification of a novel HIV-1 complex circulating recombinant form (CRF18_cpx) of Central African origin in Cuba. AIDS 2005 0.91
39 jmodeltest.org: selection of nucleotide substitution models on the cloud. Bioinformatics 2014 0.89
40 Phylodynamics of HIV-1 from a phase-III AIDS vaccine trial in North America. Mol Biol Evol 2009 0.87
41 Widespread gene conversion of alpha-2-fucosyltransferase genes in mammals. J Mol Evol 2009 0.87
42 Disease progression and evolution of the HIV-1 env gene in 24 infected infants. Infect Genet Evol 2007 0.87
43 Protein evolution along phylogenetic histories under structurally constrained substitution models. Bioinformatics 2013 0.87
44 Lack of temporal structure in the short term HIV-1 evolution within asymptomatic naïve patients. Virology 2007 0.87
45 Simulation of genome-wide evolution under heterogeneous substitution models and complex multispecies coalescent histories. Mol Biol Evol 2014 0.87
46 Genome-wide heterogeneity of nucleotide substitution model fit. Genome Biol Evol 2011 0.86
47 Computational design of centralized HIV-1 genes. Curr HIV Res 2010 0.85
48 Characterization of reticulate networks based on the coalescent with recombination. Mol Biol Evol 2008 0.84
49 Longitudinal population analysis of dual infection with recombination in two strains of HIV type 1 subtype B in an individual from a Phase 3 HIV vaccine efficacy trial. AIDS Res Hum Retroviruses 2006 0.82
50 Individual sequence variability and functional activities of fibrinogen-related proteins (FREPs) in the Mediterranean mussel (Mytilus galloprovincialis) suggest ancient and complex immune recognition models in invertebrates. Dev Comp Immunol 2010 0.82
51 Phylogenetic affinities of Comoroan and East African day geckos (genus Phelsuma): multiple natural colonisations, introductions and island radiations. Mol Phylogenet Evol 2006 0.81
52 Proving universal common ancestry with similar sequences. Trends Evol Biol 2012 0.81
53 HIV-1 infected monozygotic twins: a tale of two outcomes. BMC Evol Biol 2011 0.81
54 New approach to an old problem: Incorporating signal from gap-rich regions of ITS and rDNA large subunit into phylogenetic analyses to resolve the Peltigera canina species complex. Mycologia 2010 0.80
55 The evolution of the mitochondrial genetic code in arthropods revisited. Mitochondrial DNA 2012 0.80
56 On the phylogenetic placement of human T cell leukemia virus type 1 sequences associated with an Andean mummy. Infect Genet Evol 2005 0.79
57 Detection and reduction of microaggregates in insulin preparations. Biotechnol Bioeng 2011 0.78
58 Origin and length distribution of unidirectional prokaryotic overlapping genes. G3 (Bethesda) 2014 0.77
59 Insights into origins of Human T-cell Lymphotropic Virus Type 1 based on new strains from aboriginal people of Canada. Infect Genet Evol 2012 0.77
60 Genetic code prediction for metazoan mitochondria with GenDecoder. Methods Mol Biol 2009 0.76
61 Molecular phylogeny and biogeographic history of the European Maja spider crabs (Decapoda, Majidae). Mol Phylogenet Evol 2009 0.76
62 Grid selection of models of nucleotide substitution. Stud Health Technol Inform 2010 0.75
63 Correction: A First Insight into the Genome of the Filter-Feeder Mussel Mytilus galloprovincialis. PLoS One 2016 0.75
64 Base-pairing versatility determines wobble sites in tRNA anticodons of vertebrate mitogenomes. PLoS One 2012 0.75
65 Flow-induced 2D protein crystallization: characterization of the coupled interfacial and bulk flows. Soft Matter 2015 0.75