Published in J Mol Biol on June 27, 2006
Methods for kinetic and thermodynamic analysis of aminoacyl-tRNA synthetases. Methods (2008) 1.46
[3'-32P]-labeling tRNA with nucleotidyltransferase for assaying aminoacylation and peptide bond formation. Methods (2008) 1.43
Resampling and editing of mischarged tRNA prior to translation elongation. Mol Cell (2009) 1.40
Kinetic discrimination of tRNA identity by the conserved motif 2 loop of a class II aminoacyl-tRNA synthetase. Mol Cell (2007) 1.28
Mechanism of tRNA-dependent editing in translational quality control. Proc Natl Acad Sci U S A (2006) 1.27
Aminoacyl-tRNA synthetase complexes: molecular multitasking revealed. FEMS Microbiol Rev (2008) 1.17
Partitioning of tRNA-dependent editing between pre- and post-transfer pathways in class I aminoacyl-tRNA synthetases. J Biol Chem (2010) 1.11
Directed mutagenesis identifies amino acid residues involved in elongation factor Tu binding to yeast Phe-tRNAPhe. J Mol Biol (2007) 1.07
Control of catalytic cycle by a pair of analogous tRNA modification enzymes. J Mol Biol (2010) 1.06
Steady-state and pre-steady-state kinetic analysis of Mycobacterium smegmatis cysteine ligase (MshC). Biochemistry (2007) 1.02
Kinetic partitioning between synthetic and editing pathways in class I aminoacyl-tRNA synthetases occurs at both pre-transfer and post-transfer hydrolytic steps. J Biol Chem (2012) 1.00
tRNAs: cellular barcodes for amino acids. FEBS Lett (2010) 0.99
An aminoacyl-tRNA synthetase:elongation factor complex for substrate channeling in archaeal translation. Nucleic Acids Res (2007) 0.97
The selective tRNA aminoacylation mechanism based on a single G•U pair. Nature (2014) 0.96
Selection of tRNA charging quality control mechanisms that increase mistranslation of the genetic code. Nucleic Acids Res (2012) 0.94
Defects in transient tRNA translocation bypass tRNA synthetase quality control mechanisms. J Biol Chem (2009) 0.91
Potential for interdependent development of tRNA determinants for aminoacylation and ribosome decoding. Nat Commun (2011) 0.90
Kinetic quality control of anticodon recognition by a eukaryotic aminoacyl-tRNA synthetase. J Mol Biol (2007) 0.89
Exit strategies for charged tRNA from GluRS. J Mol Biol (2010) 0.89
Structural and functional mapping of the archaeal multi-aminoacyl-tRNA synthetase complex. FEBS Lett (2008) 0.89
Mechanism of oxidant-induced mistranslation by threonyl-tRNA synthetase. Nucleic Acids Res (2014) 0.88
Coordination of tRNA synthetase active sites for chemical fidelity. J Biol Chem (2012) 0.86
Two-step aminoacylation of tRNA without channeling in Archaea. J Mol Biol (2011) 0.85
Kinetics of tRNA folding monitored by aminoacylation. RNA (2012) 0.84
The asparagine-transamidosome from Helicobacter pylori: a dual-kinetic mode in non-discriminating aspartyl-tRNA synthetase safeguards the genetic code. Nucleic Acids Res (2012) 0.83
Association of a multi-synthetase complex with translating ribosomes in the archaeon Thermococcus kodakarensis. FEBS Lett (2012) 0.83
Homologous trans-editing factors with broad tRNA specificity prevent mistranslation caused by serine/threonine misactivation. Proc Natl Acad Sci U S A (2015) 0.83
Identification of amino acids in the N-terminal domain of atypical methanogenic-type Seryl-tRNA synthetase critical for tRNA recognition. J Biol Chem (2009) 0.81
Determinants for tRNA-dependent pretransfer editing in the synthetic site of isoleucyl-tRNA synthetase. Biochemistry (2014) 0.79
Adaptation to tRNA acceptor stem structure by flexible adjustment in the catalytic domain of class I tRNA synthetases. RNA (2011) 0.79
Emergence and evolution. Top Curr Chem (2014) 0.78
Kinetic Analysis of tRNA Methyltransferases. Methods Enzymol (2015) 0.78
The mechanistic and evolutionary aspects of the 2'- and 3'-OH paradigm in biosynthetic machinery. Biol Direct (2013) 0.77
Amino acid-dependent stability of the acyl linkage in aminoacyl-tRNA. RNA (2014) 0.77
Elongation Factor Tu Prevents Misediting of Gly-tRNA(Gly) Caused by the Design Behind the Chiral Proofreading Site of D-Aminoacyl-tRNA Deacylase. PLoS Biol (2016) 0.76
Biosynthesis: A new (old) way of hijacking tRNA. Nat Chem Biol (2010) 0.76
Anticodon recognition and discrimination by the alpha-helix cage domain of class I lysyl-tRNA synthetase. Biochemistry (2007) 0.75
Single-Turnover Kinetics of Methyl Transfer to tRNA by Methyltransferases. Methods Mol Biol (2016) 0.75
Role of D-aminoacyl-tRNA deacylase beyond chiral proofreading as a cellular defense against glycine mischarging by AlaRS. Elife (2017) 0.75
Molecular Basis and Consequences of the Cytochrome c-tRNA Interaction. J Biol Chem (2016) 0.75
Effect of hydrogen peroxide on the biosynthesis of heme and proteins: potential implications for the partitioning of Glu-tRNA(Glu) between these pathways. Int J Mol Sci (2014) 0.75
Reaction dynamics analysis of a reconstituted Escherichia coli protein translation system by computational modeling. Proc Natl Acad Sci U S A (2017) 0.75
Genetic mapping and exome sequencing identify variants associated with five novel diseases. PLoS One (2012) 2.33
AlkB restores the biological function of mRNA and tRNA inactivated by chemical methylation. Mol Cell (2004) 2.26
Compound heterozygosity for loss-of-function lysyl-tRNA synthetase mutations in a patient with peripheral neuropathy. Am J Hum Genet (2010) 1.96
tRNA-dependent active site assembly in a class I aminoacyl-tRNA synthetase. Structure (2003) 1.73
tRNA-dependent aminoacyl-adenylate hydrolysis by a nonediting class I aminoacyl-tRNA synthetase. J Biol Chem (2005) 1.51
Amino acid discrimination by a class I aminoacyl-tRNA synthetase specified by negative determinants. J Mol Biol (2003) 1.47
Methods for kinetic and thermodynamic analysis of aminoacyl-tRNA synthetases. Methods (2008) 1.46
DNA cleavage by EcoRV endonuclease: two metal ions in three metal ion binding sites. Biochemistry (2004) 1.40
Distinct origins of tRNA(m1G37) methyltransferase. J Mol Biol (2004) 1.38
Escherichia coli O86 O-antigen biosynthetic gene cluster and stepwise enzymatic synthesis of human blood group B antigen tetrasaccharide. J Am Chem Soc (2005) 1.38
Distinct determinants of tRNA recognition by the TrmD and Trm5 methyl transferases. J Mol Biol (2007) 1.37
Aminoacylation of tRNA with phosphoserine for synthesis of cysteinyl-tRNA(Cys). Nat Struct Mol Biol (2008) 1.33
Rapid ribosomal translocation depends on the conserved 18-55 base pair in P-site transfer RNA. Nat Struct Mol Biol (2006) 1.31
Aminoacyl-tRNA synthetases: versatile players in the changing theater of translation. RNA (2002) 1.29
Redundant synthesis of cysteinyl-tRNACys in Methanosarcina mazei. J Biol Chem (2008) 1.29
Shape-selective RNA recognition by cysteinyl-tRNA synthetase. Nat Struct Mol Biol (2004) 1.25
Structure of the Escherichia coli leucine-responsive regulatory protein Lrp reveals a novel octameric assembly. J Mol Biol (2006) 1.22
Long-range intramolecular signaling in a tRNA synthetase complex revealed by pre-steady-state kinetics. Proc Natl Acad Sci U S A (2004) 1.22
The archetype gamma-class carbonic anhydrase (Cam) contains iron when synthesized in vivo. Biochemistry (2009) 1.20
Structural origins of amino acid selection without editing by cysteinyl-tRNA synthetase. EMBO J (2002) 1.20
Genes adopt non-optimal codon usage to generate cell cycle-dependent oscillations in protein levels. Mol Syst Biol (2012) 1.19
Sequence selectivity and degeneracy of a restriction endonuclease mediated by DNA intercalation. Nat Struct Biol (2002) 1.15
A recurrent loss-of-function alanyl-tRNA synthetase (AARS) mutation in patients with Charcot-Marie-Tooth disease type 2N (CMT2N). Hum Mutat (2011) 1.14
Partitioning of tRNA-dependent editing between pre- and post-transfer pathways in class I aminoacyl-tRNA synthetases. J Biol Chem (2010) 1.11
Catalysis by the second class of tRNA(m1G37) methyl transferase requires a conserved proline. Biochemistry (2006) 1.09
Amino acid-dependent transfer RNA affinity in a class I aminoacyl-tRNA synthetase. J Biol Chem (2005) 1.07
Control of catalytic cycle by a pair of analogous tRNA modification enzymes. J Mol Biol (2010) 1.06
Simultaneous DNA binding and bending by EcoRV endonuclease observed by real-time fluorescence. Biochemistry (2003) 1.06
Zinc-mediated amino acid discrimination in cysteinyl-tRNA synthetase. J Mol Biol (2003) 1.05
Exploring writhe in supercoiled minicircle DNA. J Phys Condens Matter (2006) 1.03
Indirect readout of tRNA for aminoacylation. Biochemistry (2007) 1.01
The homotetrameric phosphoseryl-tRNA synthetase from Methanosarcina mazei exhibits half-of-the-sites activity. J Biol Chem (2008) 1.01
Kinetic partitioning between synthetic and editing pathways in class I aminoacyl-tRNA synthetases occurs at both pre-transfer and post-transfer hydrolytic steps. J Biol Chem (2012) 1.00
Mechanism of N-methylation by the tRNA m1G37 methyltransferase Trm5. RNA (2010) 0.99
Aminoacylating urzymes challenge the RNA world hypothesis. J Biol Chem (2013) 0.99
Perturbation of the tRNA tertiary core differentially affects specific steps of the elongation cycle. J Biol Chem (2008) 0.99
Fluorescent labeling of tRNAs for dynamics experiments. RNA (2007) 0.98
Structural and mechanistic basis for enhanced translational efficiency by 2-thiouridine at the tRNA anticodon wobble position. J Mol Biol (2013) 0.98
Differentiating analogous tRNA methyltransferases by fragments of the methyl donor. RNA (2011) 0.97
Formation of m2G6 in Methanocaldococcus jannaschii tRNA catalyzed by the novel methyltransferase Trm14. Nucleic Acids Res (2011) 0.96
Stereochemical mechanisms of tRNA methyltransferases. FEBS Lett (2010) 0.96
Recognition of guanosine by dissimilar tRNA methyltransferases. RNA (2012) 0.96
Structural conservation of an ancient tRNA sensor in eukaryotic glutaminyl-tRNA synthetase. Nucleic Acids Res (2011) 0.96
Poly(C) synthesis by class I and class II CCA-adding enzymes. Biochemistry (2002) 0.95
Histidyl-tRNA synthetase urzymes: Class I and II aminoacyl tRNA synthetase urzymes have comparable catalytic activities for cognate amino acid activation. J Biol Chem (2011) 0.94
Association of an aminoacyl-tRNA synthetase with a putative metabolic protein in archaea. Biochemistry (2003) 0.94
tRNA integrity is a prerequisite for rapid CCA addition: implication for quality control. J Mol Biol (2008) 0.94
Domain-domain communication for tRNA aminoacylation: the importance of covalent connectivity. Biochemistry (2005) 0.93
A rationally engineered misacylating aminoacyl-tRNA synthetase. Proc Natl Acad Sci U S A (2008) 0.93
Impaired function is a common feature of neuropathy-associated glycyl-tRNA synthetase mutations. Hum Mutat (2014) 0.92
A role for SUMO in nucleotide excision repair. DNA Repair (Amst) (2011) 0.92
Allosteric communication in cysteinyl tRNA synthetase: a network of direct and indirect readout. J Biol Chem (2011) 0.92
Protein engineering of toluene-o-xylene monooxygenase from Pseudomonas stutzeri OX1 for oxidizing nitrobenzene to 3-nitrocatechol, 4-nitrocatechol, and nitrohydroquinone. J Biotechnol (2005) 0.92
Amino acid discrimination by a highly differentiated metal center of an aminoacyl-tRNA synthetase. Biochemistry (2003) 0.91
Heat maps for intramolecular communication in an RNP enzyme encoding glutamine. Structure (2011) 0.90
Potential for interdependent development of tRNA determinants for aminoacylation and ribosome decoding. Nat Commun (2011) 0.90
Conservation of structure and mechanism by Trm5 enzymes. RNA (2013) 0.89
Kinetic quality control of anticodon recognition by a eukaryotic aminoacyl-tRNA synthetase. J Mol Biol (2007) 0.89
Pyrophosphorolysis of CCA addition: implication for fidelity. J Mol Biol (2011) 0.88
Breaking the stereo barrier of amino acid attachment to tRNA by a single nucleotide. J Mol Biol (2005) 0.88
Active-site assembly in glutaminyl-tRNA synthetase by tRNA-mediated induced fit. Biochemistry (2006) 0.87
Pyrrolo-C as a molecular probe for monitoring conformations of the tRNA 3' end. RNA (2008) 0.86
The catalytic domain of topological knot tRNA methyltransferase (TrmH) discriminates between substrate tRNA and nonsubstrate tRNA via an induced-fit process. J Biol Chem (2013) 0.86
Synthesis of Glu-tRNA(Gln) by engineered and natural aminoacyl-tRNA synthetases. Biochemistry (2010) 0.86
Apoptotic regulation and tRNA. Protein Cell (2010) 0.86
The temperature sensitivity of a mutation in the essential tRNA modification enzyme tRNA methyltransferase D (TrmD). J Biol Chem (2013) 0.85
Two-step aminoacylation of tRNA without channeling in Archaea. J Mol Biol (2011) 0.85
Kinetics of tRNA folding monitored by aminoacylation. RNA (2012) 0.84
Electrostatic contributions to site specific DNA cleavage by EcoRV endonuclease. Biochemistry (2002) 0.84
Non-cognate enzyme-DNA complex: structural and kinetic analysis of EcoRV endonuclease bound to the EcoRI recognition site GAATTC. J Mol Biol (2005) 0.84
The energetic contribution of induced electrostatic asymmetry to DNA bending by a site-specific protein. J Mol Biol (2010) 0.83
Modified bases in RNA reduce secondary structure and enhance hybridization. Biochemistry (2004) 0.83
Unrestricted accessibility of short oligonucleotides to RNA. RNA (2005) 0.82
Synthesis of cysteinyl-tRNACys by a prolyl-tRNA synthetase. RNA Biol (2004) 0.82
Distinct kinetic determinants for the stepwise CCA addition to tRNA. RNA (2009) 0.81
Amino acid activation of a dual-specificity tRNA synthetase is independent of tRNA. J Mol Biol (2002) 0.81
Prevention of mis-aminoacylation of a dual-specificity aminoacyl-tRNA synthetase. J Mol Biol (2002) 0.81
Novel proteins for homocysteine biosynthesis in anaerobic microorganisms. Mol Microbiol (2014) 0.80
Structural dynamics of a mitochondrial tRNA possessing weak thermodynamic stability. Biochemistry (2014) 0.80
Unrestricted hybridization of oligonucleotides to structure-free DNA. Biochemistry (2006) 0.80
Architectural underpinnings of the genetic code for glutamine. Biochemistry (2009) 0.80
Adaptation to tRNA acceptor stem structure by flexible adjustment in the catalytic domain of class I tRNA synthetases. RNA (2011) 0.79
Aminoacylation of an unusual tRNA(Cys) from an extreme halophile. RNA (2003) 0.79
Acquisition of an insertion peptide for efficient aminoacylation by a halophile tRNA synthetase. Biochemistry (2006) 0.79
Engineered extrahelical base destabilization enhances sequence discrimination of DNA methyltransferase M.HhaI. J Mol Biol (2006) 0.79
Enzymatic synthesis of structure-free DNA with pseudo-complementary properties. Nucleic Acids Res (2008) 0.79
Determinants for tRNA-dependent pretransfer editing in the synthetic site of isoleucyl-tRNA synthetase. Biochemistry (2014) 0.79
Fluorophore labeling to monitor tRNA dynamics. Methods Enzymol (2009) 0.79
Recognition of tRNA backbone for aminoacylation with cysteine: evolution from Escherichia coli to human. J Mol Biol (2002) 0.79
Incorporation of tellurocysteine into glutathione transferase generates high glutathione peroxidase efficiency. Angew Chem Int Ed Engl (2009) 0.78