Published in Proc Natl Acad Sci U S A on July 25, 2006
Cleavage mechanism of human Mus81-Eme1 acting on Holliday-junction structures. Proc Natl Acad Sci U S A (2008) 1.62
Type III restriction enzymes communicate in 1D without looping between their target sites. Proc Natl Acad Sci U S A (2009) 1.38
Type II restriction endonucleases--a historical perspective and more. Nucleic Acids Res (2014) 1.22
Restriction endonucleases that bridge and excise two recognition sites from DNA. J Mol Biol (2007) 1.02
Optical measurement of mechanical forces inside short DNA loops. Biophys J (2007) 0.92
Dynamics and consequences of DNA looping by the FokI restriction endonuclease. Nucleic Acids Res (2008) 0.90
DNA translocation by type III restriction enzymes: a comparison of current models of their operation derived from ensemble and single-molecule measurements. Nucleic Acids Res (2011) 0.89
Differences between Ca2+ and Mg2+ in DNA binding and release by the SfiI restriction endonuclease: implications for DNA looping. Nucleic Acids Res (2009) 0.88
Creation of a type IIS restriction endonuclease with a long recognition sequence. Nucleic Acids Res (2009) 0.87
DNA looping by FokI: the impact of synapse geometry on loop topology at varied site orientations. Nucleic Acids Res (2012) 0.86
Dynamics of single DNA looping and cleavage by Sau3AI and effect of tension applied to the DNA. Biophys J (2006) 0.85
DNA cleavage site selection by Type III restriction enzymes provides evidence for head-on protein collisions following 1D bidirectional motion. Nucleic Acids Res (2011) 0.84
Downstream DNA tension regulates the stability of the T7 RNA polymerase initiation complex. Biophys J (2011) 0.82
Concerted action at eight phosphodiester bonds by the BcgI restriction endonuclease. Nucleic Acids Res (2011) 0.82
Biophysics of protein-DNA interactions and chromosome organization. Physica A (2015) 0.81
On the role of DNA biomechanics in the regulation of gene expression. J R Soc Interface (2011) 0.80
Trans cooperativity by a split DNA recombinase: the central and catalytic domains of bacteriophage lambda integrase cooperate in cleaving DNA substrates when the two domains are not covalently linked. J Mol Biol (2007) 0.78
A new direct single-molecule observation method for DNA synthesis reaction using fluorescent replication protein A. Sensors (Basel) (2014) 0.75
Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules. Science (1996) 18.53
A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes. Nucleic Acids Res (2003) 7.56
Going the distance: a current view of enhancer action. Science (1998) 5.83
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Structure and function of type II restriction endonucleases. Nucleic Acids Res (2001) 4.78
Chromosome pairing via multiple interstitial interactions before and during meiosis in yeast. Cell (1994) 4.23
Type II restriction endonucleases: structure and mechanism. Cell Mol Life Sci (2005) 4.15
The crystal structure of EcoRV endonuclease and of its complexes with cognate and non-cognate DNA fragments. EMBO J (1993) 4.11
Molecular basis of the effects of shear stress on vascular endothelial cells. J Biomech (2005) 3.77
A mechanical basis for chromosome function. Proc Natl Acad Sci U S A (2004) 3.48
Measurement of lactose repressor-mediated loop formation and breakdown in single DNA molecules. Science (1995) 3.23
Quality and position of the three lac operators of E. coli define efficiency of repression. EMBO J (1994) 2.90
FokI requires two specific DNA sites for cleavage. J Mol Biol (2001) 2.83
Structure of Bam HI endonuclease bound to DNA: partial folding and unfolding on DNA binding. Science (1995) 2.80
Refinement of Eco RI endonuclease crystal structure: a revised protein chain tracing. Science (1990) 2.74
REBASE--restriction enzymes and DNA methyltransferases. Nucleic Acids Res (2005) 2.70
Making contacts on a nucleic acid polymer. Trends Biochem Sci (2001) 2.70
Enhancer-origin interaction in plasmid R6K involves a DNA loop mediated by initiator protein. Cell (1988) 2.21
Many type IIs restriction endonucleases interact with two recognition sites before cleaving DNA. J Biol Chem (2001) 2.03
DNA looping between the origin of replication of Epstein-Barr virus and its enhancer site: stabilization of an origin complex with Epstein-Barr nuclear antigen 1. Proc Natl Acad Sci U S A (1991) 1.86
Enzyme-mediated DNA looping. Annu Rev Biophys Biomol Struct (2004) 1.85
Near-field-magnetic-tweezer manipulation of single DNA molecules. Phys Rev E Stat Nonlin Soft Matter Phys (2004) 1.73
Statistics of loop formation along double helix DNAs. Phys Rev E Stat Nonlin Soft Matter Phys (2005) 1.67
Supercoiling and denaturation in Gal repressor/heat unstable nucleoid protein (HU)-mediated DNA looping. Proc Natl Acad Sci U S A (2003) 1.63
EcoRII can be activated to cleave refractory DNA recognition sites. Nucleic Acids Res (1988) 1.57
Real-time observation of DNA looping dynamics of Type IIE restriction enzymes NaeI and NarI. Nucleic Acids Res (2006) 1.52
DNA-tension dependence of restriction enzyme activity reveals mechanochemical properties of the reaction pathway. Nucleic Acids Res (2005) 1.48
The Cfr10I restriction enzyme is functional as a tetramer. J Mol Biol (1999) 1.46
How restriction enzymes became the workhorses of molecular biology. Proc Natl Acad Sci U S A (2005) 1.40
Forced unraveling of nucleosomes assembled on heterogeneous DNA using core histones, NAP-1, and ACF. J Mol Biol (2005) 1.39
Looping dynamics of linear DNA molecules and the effect of DNA curvature: a study by Brownian dynamics simulation. Biophys J (1998) 1.31
NaeI endonuclease binding to pBR322 DNA induces looping. Biochemistry (1991) 1.30
A general method for manipulating DNA sequences from any organism with optical tweezers. Nucleic Acids Res (2006) 1.28
Formation of loops in DNA under tension. Phys Rev E Stat Nonlin Soft Matter Phys (2005) 1.27
Cooperative binding properties of restriction endonuclease EcoRII with DNA recognition sites. J Biol Chem (1998) 1.27
Statistical-mechanical theory of DNA looping. Biophys J (2005) 1.25
Recombination by resolvase to analyse DNA communications by the SfiI restriction endonuclease. EMBO J (1996) 1.25
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One recognition sequence, seven restriction enzymes, five reaction mechanisms. Nucleic Acids Res (2004) 1.22
New insight into site-specific recombination from Flp recombinase-DNA structures. Annu Rev Biophys Biomol Struct (2003) 1.20
Sau3AI, a monomeric type II restriction endonuclease that dimerizes on the DNA and thereby induces DNA loops. J Biol Chem (2001) 1.18
Alternative geometries of DNA looping: an analysis using the SfiI endonuclease. J Mol Biol (2000) 1.16
Analysis of DNA looping interactions by type II restriction enzymes that require two copies of their recognition sites. J Mol Biol (2001) 1.16
Reactions of type II restriction endonucleases with 8-base pair recognition sites. J Biol Chem (1999) 1.14
Disruption of protein-mediated DNA looping by tension in the substrate DNA. Biophys J (2005) 1.09
Diversity of type II restriction endonucleases that require two DNA recognition sites. Nucleic Acids Res (2003) 1.07
Hopping, jumping and looping by restriction enzymes. Biochem Soc Trans (2001) 1.07
DNA looping by two-site restriction endonucleases: heterogeneous probability distributions for loop size and unbinding force. Nucleic Acids Res (2006) 1.02
Use of specific oligonucleotide duplexes to stimulate cleavage of refractory DNA sites by restriction endonucleases. Anal Biochem (1993) 1.01
DNA binding and recognition by the IIs restriction endonuclease MboII. J Biol Chem (2001) 1.00
Simultaneous binding of three recognition sites is necessary for a concerted plasmid DNA cleavage by EcoRII restriction endonuclease. J Mol Biol (2006) 0.93
Single molecule detection of DNA looping by NgoMIV restriction endonuclease. Biophys J (2003) 0.92
Imaging DNA loops induced by restriction endonuclease EcoRII. A single amino acid substitution uncouples target recognition from cooperative DNA interaction and cleavage. J Biol Chem (2000) 0.87
Oligonucleotide stimulators allow complete cleavage of agarose-embedded DNA by particular type II restriction endonucleases. Anal Biochem (1999) 0.78
Ionic effects on viral DNA packaging and portal motor function in bacteriophage phi 29. Proc Natl Acad Sci U S A (2007) 1.99
Single phage T4 DNA packaging motors exhibit large force generation, high velocity, and dynamic variability. Proc Natl Acad Sci U S A (2007) 1.92
Measurements of single DNA molecule packaging dynamics in bacteriophage lambda reveal high forces, high motor processivity, and capsid transformations. J Mol Biol (2007) 1.89
Portal motor velocity and internal force resisting viral DNA packaging in bacteriophage phi29. Biophys J (2007) 1.68
Diffusion of isolated DNA molecules: dependence on length and topology. Proc Natl Acad Sci U S A (2006) 1.54
Forced unraveling of nucleosomes assembled on heterogeneous DNA using core histones, NAP-1, and ACF. J Mol Biol (2005) 1.39
Regional alterations of brain microstructure in Parkinson's disease using diffusion tensor imaging. Mov Disord (2011) 1.36
A general method for manipulating DNA sequences from any organism with optical tweezers. Nucleic Acids Res (2006) 1.28
Spontaneous knotting of an agitated string. Proc Natl Acad Sci U S A (2007) 1.24
Identification of a rapidly formed nonnucleosomal histone-DNA intermediate that is converted into chromatin by ACF. Mol Cell (2011) 1.22
DNA as a metrology standard for length and force measurements with optical tweezers. Biophys J (2006) 1.18
Strong effects of molecular topology on diffusion of entangled DNA molecules. Proc Natl Acad Sci U S A (2007) 1.11
The Q motif of a viral packaging motor governs its force generation and communicates ATP recognition to DNA interaction. Proc Natl Acad Sci U S A (2009) 1.11
BMI and neuronal integrity in healthy, cognitively normal elderly: a proton magnetic resonance spectroscopy study. Obesity (Silver Spring) (2009) 1.11
DNA looping by two-site restriction endonucleases: heterogeneous probability distributions for loop size and unbinding force. Nucleic Acids Res (2006) 1.02
A comparison of pullout strength for pedicle screws of different designs: a study using tapped and untapped pilot holes. Spine (Phila Pa 1976) (2006) 1.00
Mutations altering a structurally conserved loop-helix-loop region of a viral packaging motor change DNA translocation velocity and processivity. J Biol Chem (2010) 0.95
Biophysics of knotting. Annu Rev Biophys (2010) 0.92
In vitro evaluation of the TandemHeart pediatric centrifugal pump. ASAIO J (2007) 0.91
Direct measurement of the intermolecular forces confining a single molecule in an entangled polymer solution. Phys Rev Lett (2007) 0.89
Dynamics of single DNA looping and cleavage by Sau3AI and effect of tension applied to the DNA. Biophys J (2006) 0.85
Single-molecule studies of viral DNA packaging. Adv Exp Med Biol (2012) 0.85
Molecular motors for DNA translocation in prokaryotes. Curr Opin Biotechnol (2012) 0.84
Evaluation of the chondral modeling theory using fe-simulation and numeric shape optimization. J Anat (2009) 0.79
Development of a percutaneous pediatric ventricular assist device. ASAIO J (2005) 0.76
Trans-hepatic cannulation: a novel approach for placement of a pediatric percutaneous ventricular assist device. ASAIO J (2006) 0.76
Multimap formation in visual cortex. J Vis (2015) 0.75
A femoral artery cannula that allows distal blood flow. J Thorac Cardiovasc Surg (2005) 0.75
Assessing the upper bound on performance of multi-voxel pattern analysis in peripheral V1. J Vis (2015) 0.75
A simple system for staining protein and nucleic acid electrophoresis gels. Electrophoresis (2007) 0.75