Published in Mob DNA on January 25, 2010
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Identification of immunity related genes to study the Physalis peruviana--Fusarium oxysporum pathosystem. PLoS One (2013) 0.94
Genome-wide prediction and analysis of human chromatin boundary elements. Nucleic Acids Res (2011) 0.93
The biological function of some human transcription factor binding motifs varies with position relative to the transcription start site. Nucleic Acids Res (2008) 0.92
Epigenetic regulation of human cis-natural antisense transcripts. Nucleic Acids Res (2012) 0.91
Development and characterization of microsatellite markers for the Cape gooseberry Physalis peruviana. PLoS One (2011) 0.91
Identification of a tumor-suppressive human-specific microRNA within the FHIT tumor-suppressor gene. Cancer Res (2014) 0.90
Chromatin signature discovery via histone modification profile alignments. Nucleic Acids Res (2012) 0.89
Endogenous retroviruses of the chicken genome. Biol Direct (2008) 0.89
Prediction of transposable element derived enhancers using chromatin modification profiles. PLoS One (2011) 0.88
Transcription factor binding sites are highly enriched within microRNA precursor sequences. Biol Direct (2011) 0.88
Co-evolutionary rates of functionally related yeast genes. Evol Bioinform Online (2006) 0.88
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Neisseria Base: a comparative genomics database for Neisseria meningitidis. Database (Oxford) (2011) 0.88
Meningococcus genome informatics platform: a system for analyzing multilocus sequence typing data. Nucleic Acids Res (2009) 0.86
Epigenetic regulation of Mammalian genomes by transposable elements. Ann N Y Acad Sci (2009) 0.86
Benchmarking computational tools for polymorphic transposable element detection. Brief Bioinform (2016) 0.85
A c-Myc regulatory subnetwork from human transposable element sequences. Mol Biosyst (2009) 0.85
Many sequence-specific chromatin modifying protein-binding motifs show strong positional preferences for potential regulatory regions in the Saccharomyces cerevisiae genome. Nucleic Acids Res (2010) 0.85
A method for visualization of "omic" datasets for sphingolipid metabolism to predict potentially interesting differences. J Lipid Res (2011) 0.84
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Highly conserved regimes of neighbor-base-dependent mutation generated the background primary-structural heterogeneities along vertebrate chromosomes. PLoS One (2008) 0.82
Effect of the transposable element environment of human genes on gene length and expression. Genome Biol Evol (2011) 0.82
Protein interactions with piALU RNA indicates putative participation of retroRNA in the cell cycle, DNA repair and chromatin assembly. Mob Genet Elements (2012) 0.81
Relating the disease mutation spectrum to the evolution of the cystic fibrosis transmembrane conductance regulator (CFTR). PLoS One (2012) 0.81
Genomic basis of a polyagglutinating isolate of Neisseria meningitidis. J Bacteriol (2012) 0.80
Analysis of transposable element sequences using CENSOR and RepeatMasker. Methods Mol Biol (2009) 0.80
Using single-nucleotide polymorphisms to discriminate disease-associated from carried genomes of Neisseria meningitidis. J Bacteriol (2011) 0.80
Scanning sequences after Gibbs sampling to find multiple occurrences of functional elements. BMC Bioinformatics (2006) 0.80
Cell type-specific termination of transcription by transposable element sequences. Mob DNA (2012) 0.80
Origin and evolution of the cystic fibrosis transmembrane regulator protein R domain. Gene (2013) 0.79
Epigenetics components of aging in the central nervous system. Neurotherapeutics (2013) 0.79
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Genome sequence-based discriminator for vancomycin-intermediate Staphylococcus aureus. J Bacteriol (2013) 0.79
Analysis of biological features associated with meiotic recombination hot and cold spots in Saccharomyces cerevisiae. PLoS One (2011) 0.79
In silico identification and characterization of the ion transport specificity for P-type ATPases in the Mycobacterium tuberculosis complex. BMC Struct Biol (2012) 0.79
Transcriptional activity, chromosomal distribution and expression effects of transposable elements in Coffea genomes. PLoS One (2013) 0.79
Do human transposable element small RNAs serve primarily as genome defenders or genome regulators? Mob Genet Elements (2012) 0.78
Identification of transcription factor binding sites derived from transposable element sequences using ChIP-seq. Methods Mol Biol (2010) 0.77
Polymorphism of the Pv200L fragment of merozoite surface protein-1 of Plasmodium vivax in clinical isolates from the Pacific coast of Colombia. Am J Trop Med Hyg (2011) 0.77
Transcriptional regulation of N-acetylglutamate synthase. PLoS One (2012) 0.76
The practical evaluation of DNA barcode efficacy. Methods Mol Biol (2012) 0.76
Differences in local genomic context of bound and unbound motifs. Gene (2012) 0.75
Compound cis-regulatory elements with both boundary and enhancer sequences in the human genome. Bioinformatics (2013) 0.75