Published in Nucleic Acids Res on September 08, 2006
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The putative RNA helicase Dbp6p functionally interacts with Rpl3p, Nop8p and the novel trans-acting Factor Rsa3p during biogenesis of 60S ribosomal subunits in Saccharomyces cerevisiae. Genetics (2004) 0.89
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Upstream and downstream of ran GTPase. Biol Chem (2000) 0.88
Identification of NOL8, a nucleolar protein containing an RNA recognition motif (RRM), which was overexpressed in diffuse-type gastric cancer. Cancer Sci (2004) 0.86
A novel human nucleolar protein, Nop132, binds to the G proteins, RRAG A/C/D. J Biol Chem (2003) 0.85
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Association of the GTP-binding protein Gtr1p with Rpc19p, a shared subunit of RNA polymerase I and III in yeast Saccharomyces cerevisiae. Genetics (2005) 0.83
Two E3 ubiquitin ligases, SCF-Skp2 and DDB1-Cul4, target human Cdt1 for proteolysis. EMBO J (2006) 3.53
Lectin affinity capture, isotope-coded tagging and mass spectrometry to identify N-linked glycoproteins. Nat Biotechnol (2003) 3.15
Budding yeast Dsk2p is a polyubiquitin-binding protein that can interact with the proteasome. Proc Natl Acad Sci U S A (2002) 2.63
A direct nanoflow liquid chromatography-tandem mass spectrometry system for interaction proteomics. Anal Chem (2002) 2.18
Large-scale identification of Caenorhabditis elegans proteins by multidimensional liquid chromatography-tandem mass spectrometry. J Proteome Res (2003) 1.85
Retracted Nuclear receptor function requires a TFTC-type histone acetyl transferase complex. Mol Cell (2002) 1.75
14-3-3 proteins modulate the expression of epithelial Na+ channels by phosphorylation-dependent interaction with Nedd4-2 ubiquitin ligase. J Biol Chem (2005) 1.74
Proteolysis of DNA replication licensing factor Cdt1 in S-phase is performed independently of geminin through its N-terminal region. J Biol Chem (2004) 1.61
ALS2, a novel guanine nucleotide exchange factor for the small GTPase Rab5, is implicated in endosomal dynamics. Hum Mol Genet (2003) 1.58
Energy- and temperature-dependent transport of integral proteins to the inner nuclear membrane via the nuclear pore. J Cell Biol (2004) 1.58
Molecular constituents of the postsynaptic density fraction revealed by proteomic analysis using multidimensional liquid chromatography-tandem mass spectrometry. J Neurochem (2004) 1.54
Proteomic analysis of human Nop56p-associated pre-ribosomal ribonucleoprotein complexes. Possible link between Nop56p and the nucleolar protein treacle responsible for Treacher Collins syndrome. J Biol Chem (2003) 1.36
Mass spectrometric identification of N-linked glycopeptides using lectin-mediated affinity capture and glycosylation site-specific stable isotope tagging. Nat Protoc (2006) 1.32
Potential roles for ubiquitin and the proteasome during ribosome biogenesis. Mol Cell Biol (2006) 1.25
Cell surface labeling and mass spectrometry reveal diversity of cell surface markers and signaling molecules expressed in undifferentiated mouse embryonic stem cells. Mol Cell Proteomics (2005) 1.23
Comprehensive screening for antigens overexpressed on carcinomas via isolation of human mAbs that may be therapeutic. Proc Natl Acad Sci U S A (2008) 1.21
Human DDX3Y, the Y-encoded isoform of RNA helicase DDX3, rescues a hamster temperature-sensitive ET24 mutant cell line with a DDX3X mutation. Exp Cell Res (2004) 1.21
Only a small subset of the horizontally transferred chromosomal genes in Escherichia coli are translated into proteins. Mol Cell Proteomics (2004) 1.20
Association of human DNA helicase RecQ5beta with RNA polymerase II and its possible role in transcription. Biochem J (2008) 1.20
Proteomic snapshot analyses of preribosomal ribonucleoprotein complexes formed at various stages of ribosome biogenesis in yeast and mammalian cells. Mass Spectrom Rev (2003) 1.16
TRIM11 binds to and destabilizes a key component of the activator-mediated cofactor complex (ARC105) through the ubiquitin-proteasome system. FEBS Lett (2006) 1.14
Informatics for mass spectrometry-based RNA analysis. Mass Spectrom Rev (2011) 1.13
Multiple molecular interactions implicate the connectin/titin N2A region as a modulating scaffold for p94/calpain 3 activity in skeletal muscle. J Biol Chem (2008) 1.10
Characterization of an lhx1a transgenic reporter in zebrafish. Int J Dev Biol (2010) 1.08
Isolation and proteomic characterization of human Parvulin-associating preribosomal ribonucleoprotein complexes. J Biol Chem (2002) 1.08
Glycolytic enzyme GAPDH promotes peroxide stress signaling through multistep phosphorelay to a MAPK cascade. Mol Cell (2008) 1.07
Phosphorylation-dependent interaction of kinesin light chain 2 and the 14-3-3 protein. Biochemistry (2002) 1.05
Large-scale identification of proteins expressed in mouse embryonic stem cells. Proteomics (2005) 1.03
Hsp90 regulates the Fanconi anemia DNA damage response pathway. Blood (2007) 1.03
Proteolysis of CD14 on human gingival fibroblasts by arginine-specific cysteine proteinases from Porphyromonas gingivalis leading to down-regulation of lipopolysaccharide-induced interleukin-8 production. Infect Immun (2002) 1.02
Connective tissue growth factor promotes articular damage by increased osteoclastogenesis in patients with rheumatoid arthritis. Arthritis Res Ther (2009) 1.01
Ariadne: a database search engine for identification and chemical analysis of RNA using tandem mass spectrometry data. Nucleic Acids Res (2009) 1.00
STEM: a software tool for large-scale proteomic data analyses. J Proteome Res (2005) 1.00
Large-scale identification of N-glycosylated proteins of mouse tissues and construction of a glycoprotein database, GlycoProtDB. J Proteome Res (2012) 0.99
Proteomics reveals N-linked glycoprotein diversity in Caenorhabditis elegans and suggests an atypical translocation mechanism for integral membrane proteins. Mol Cell Proteomics (2007) 0.98
Extracellular vesicle isolation and characterization: toward clinical application. J Clin Invest (2016) 0.95
A temperature-sensitive mutant of the mammalian RNA helicase, DEAD-BOX X isoform, DBX, defective in the transition from G1 to S phase. J Biochem (2003) 0.95
Seasonal changes in spermatogenesis and peripheral testosterone concentration in raccoons (Procyon lotor) in Hokkaido. J Vet Med Sci (2012) 0.94
An analytical platform for mass spectrometry-based identification and chemical analysis of RNA in ribonucleoprotein complexes. Nucleic Acids Res (2009) 0.93
Fluoride released from glass-ionomer cement is responsible to inhibit the acid production of caries-related oral streptococci. Dent Mater (2009) 0.92
p53 gene status and expression of p53, MDM2, and p14 proteins in ameloblastomas. J Oral Pathol Med (2004) 0.91
Hydrogen sulfide-producing bacteria in tongue biofilm and their relationship with oral malodour. J Med Microbiol (2005) 0.91
Regulation of the Lim-1 gene is mediated through conserved FAST-1/FoxH1 sites in the first intron. Dev Dyn (2002) 0.91
Splicing factor 2-associated protein p32 participates in ribosome biogenesis by regulating the binding of Nop52 and fibrillarin to preribosome particles. Mol Cell Proteomics (2011) 0.90
Identification of truncated forms of U1 snRNA reveals a novel RNA degradation pathway during snRNP biogenesis. Nucleic Acids Res (2013) 0.90
Parvulin (Par14), a peptidyl-prolyl cis-trans isomerase, is a novel rRNA processing factor that evolved in the metazoan lineage. Mol Cell Proteomics (2009) 0.89
Comprehensive survey of p94/calpain 3 substrates by comparative proteomics--possible regulation of protein synthesis by p94. Biotechnol J (2007) 0.89
Testicular proteins associated with the germ cell-marker, TEX101: involvement of cellubrevin in TEX101-trafficking to the cell surface during spermatogenesis. Biochem Biophys Res Commun (2006) 0.88
Saccharomyces cerevisiae QNS1 codes for NAD(+) synthetase that is functionally conserved in mammals. Yeast (2003) 0.87
Human cell growth regulator Ly-1 antibody reactive homologue accelerates processing of preribosomal RNA. Genes Cells (2014) 0.86
Saccharomyces cerevisiae GTPase complex: Gtr1p-Gtr2p regulates cell-proliferation through Saccharomyces cerevisiae Ran-binding protein, Yrb2p. Biochem Biophys Res Commun (2005) 0.85
K-Ras gene status and expression of Ras/mitogen-activated protein kinase (MAPK) signaling molecules in ameloblastomas. J Oral Pathol Med (2004) 0.85
A novel human nucleolar protein, Nop132, binds to the G proteins, RRAG A/C/D. J Biol Chem (2003) 0.85
Profiling of bacterial flora in crevices around titanium orthodontic anchor plates. Clin Oral Implants Res (2007) 0.85
Profiling of dental plaque microflora on root caries lesions and the protein-denaturing activity of these bacteria. Am J Dent (2011) 0.84
Timing of puberty and its relationship with body growth and season in male raccoons (Procyon lotor) in Hokkaido. J Reprod Dev (2013) 0.84
Effects of the antibacterial monomer 12-methacryloyloxydodecylpyridinium bromide (MDPB) on bacterial viability and metabolism. Eur J Oral Sci (2011) 0.84
Microflora profiling of infected root canal before and after treatment using culture-independent methods. J Microbiol (2012) 0.83
Denaturing reversed phase liquid chromatographic separation of non-coding ribonucleic acids on macro-porous polystyrene-divinylbenzene resins. J Chromatogr A (2013) 0.83
Association of the GTP-binding protein Gtr1p with Rpc19p, a shared subunit of RNA polymerase I and III in yeast Saccharomyces cerevisiae. Genetics (2005) 0.83
Nuclear RanGAP is required for the heterochromatin assembly and is reciprocally regulated by histone H3 and Clr4 histone methyltransferase in Schizosaccharomyces pombe. Mol Biol Cell (2006) 0.83
Cultivable anaerobic microbiota of infected root canals. Int J Dent (2012) 0.83
Brl1p -- a novel nuclear envelope protein required for nuclear transport. Traffic (2005) 0.83
Phosphorylation of threonine 204 of DEAD-box RNA helicase DDX3 by cyclin B/cdc2 in vitro. Biochem Biophys Res Commun (2007) 0.82
Evidence for mitochondrial localization of P5, a member of the protein disulphide isomerase family. J Biochem (2008) 0.82
In-gel digestion for mass spectrometric characterization of RNA from fluorescently stained polyacrylamide gels. Anal Chem (2010) 0.82
Mass spectrometric identification and quantification of glycosyl flavonoids, including dihydrochalcones with neutral loss scan mode. Anal Biochem (2005) 0.82
DGKζ is involved in LPS-activated phagocytosis through IQGAP1/Rac1 pathway. Biochem Biophys Res Commun (2012) 0.82
Inhibition of connective tissue growth factor ameliorates disease in a murine model of rheumatoid arthritis. Arthritis Rheum (2013) 0.81
Calcineurin inhibitors block dorsal-side signaling that affect late-stage development of the heart, kidney, liver, gut and somitic tissue during Xenopus embryogenesis. Dev Growth Differ (2004) 0.81
Comparative proteomic analysis reveals differentially expressed proteins in Caenorhabditis elegans pgl-1 mutants grown at 20°C and 25°C. J Proteomics (2012) 0.80
Comparison of age-dependent expression of aggrecan and ADAMTSs in mandibular condylar cartilage, tibial growth plate, and articular cartilage in rats. Histochem Cell Biol (2006) 0.80
Molecular characterization and expression of dipeptidase 3, a testis-specific membrane-bound dipeptidase: complex formation with TEX101, a germ-cell-specific antigen in the mouse testis. J Reprod Immunol (2011) 0.80
Effects of a coating resin containing S-PRG filler to prevent demineralization of root surfaces. Dent Mater J (2012) 0.79
Global PROTOMAP profiling to search for biomarkers of early-recurrent hepatocellular carcinoma. J Proteome Res (2014) 0.79
Expression of type IV collagen and laminin at the interface between epithelial cells and fibroblasts from human periodontal ligament. Eur J Oral Sci (2005) 0.79
Equatorin: identification and characterization of the epitope of the MN9 antibody in the mouse. Biol Reprod (2009) 0.79
A high-sensitive and non-radioisotopic fluorescence dye method for evaluating bacterial adhesion to denture materials. Dent Mater J (2013) 0.78
A hamster temperature-sensitive alanyl-tRNA synthetase mutant causes degradation of cell-cycle related proteins and apoptosis. J Biochem (2004) 0.77
Schizosaccharomyces pombe RanGAP homolog, SpRna1, is required for centromeric silencing and chromosome segregation. Mol Biol Cell (2004) 0.77
Proteomics: advanced technology for the analysis of cellular function. J Nutr (2003) 0.77