Entrez Gene: gene-centered information at NCBI.

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res (2008) 54.83

NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res (2006) 48.10

NCBI Reference Sequences: current status, policy and new initiatives. Nucleic Acids Res (2008) 26.04

Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2007) 22.53

Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2008) 21.36

Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2006) 18.84

The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes. Genome Res (2009) 14.90

The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions. Nucleic Acids Res (2007) 13.81

Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2009) 12.51

The Human Gene Mutation Database: 2008 update. Genome Med (2009) 11.72

BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources. Genome Biol (2009) 11.17

Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2010) 10.97

PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium. Nucleic Acids Res (2009) 9.14

JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update. Nucleic Acids Res (2007) 8.79

Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions. PLoS Genet (2009) 8.39

The HGNC Database in 2008: a resource for the human genome. Nucleic Acids Res (2007) 7.29

Walking the interactome for prioritization of candidate disease genes. Am J Hum Genet (2008) 7.03

Meta-analysis of gene expression profiles in breast cancer: toward a unified understanding of breast cancer subtyping and prognosis signatures. Breast Cancer Res (2008) 6.63

genenames.org: the HGNC resources in 2011. Nucleic Acids Res (2010) 5.77

miRTarBase: a database curates experimentally validated microRNA-target interactions. Nucleic Acids Res (2010) 5.72

miRDB: a microRNA target prediction and functional annotation database with a wiki interface. RNA (2008) 5.48

IMGT, the international ImMunoGeneTics information system. Nucleic Acids Res (2008) 5.42

Reconstruction of biochemical networks in microorganisms. Nat Rev Microbiol (2008) 5.36

ChemBank: a small-molecule screening and cheminformatics resource database. Nucleic Acids Res (2007) 5.10

BioVenn - a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams. BMC Genomics (2008) 5.07

Histone deacetylases 1 and 2 redundantly regulate cardiac morphogenesis, growth, and contractility. Genes Dev (2007) 4.50

The Zebrafish Information Network: the zebrafish model organism database provides expanded support for genotypes and phenotypes. Nucleic Acids Res (2007) 4.30

BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions. BMC Bioinformatics (2010) 3.87

Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs. Nature (2010) 3.87

Many Microbe Microarrays Database: uniformly normalized Affymetrix compendia with structured experimental metadata. Nucleic Acids Res (2007) 3.80

The Edinburgh human metabolic network reconstruction and its functional analysis. Mol Syst Biol (2007) 3.59

The Gene Wiki: community intelligence applied to human gene annotation. Nucleic Acids Res (2009) 3.51

PAT proteins, an ancient family of lipid droplet proteins that regulate cellular lipid stores. Biochim Biophys Acta (2009) 3.21

Vesiclepedia: a compendium for extracellular vesicles with continuous community annotation. PLoS Biol (2012) 3.18

Admixture mapping of white cell count: genetic locus responsible for lower white blood cell count in the Health ABC and Jackson Heart studies. Am J Hum Genet (2008) 3.06

ConsensusPathDB--a database for integrating human functional interaction networks. Nucleic Acids Res (2008) 2.77

VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology. Nucleic Acids Res (2009) 2.71

Xenbase: a Xenopus biology and genomics resource. Nucleic Acids Res (2007) 2.46

Genome-wide prioritization of disease genes and identification of disease-disease associations from an integrated human functional linkage network. Genome Biol (2009) 2.43

PepBank--a database of peptides based on sequence text mining and public peptide data sources. BMC Bioinformatics (2007) 2.27

GLIDA: GPCR--ligand database for chemical genomics drug discovery--database and tools update. Nucleic Acids Res (2007) 2.22

Adipose tissue transcriptomic signature highlights the pathological relevance of extracellular matrix in human obesity. Genome Biol (2008) 2.22

PrimerBank: a PCR primer database for quantitative gene expression analysis, 2012 update. Nucleic Acids Res (2011) 2.20

EMAGE mouse embryo spatial gene expression database: 2010 update. Nucleic Acids Res (2009) 2.16

UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs. Nucleic Acids Res (2009) 2.11

Proteomics analysis of A33 immunoaffinity-purified exosomes released from the human colon tumor cell line LIM1215 reveals a tissue-specific protein signature. Mol Cell Proteomics (2009) 2.08

An open-source framework for large-scale, flexible evaluation of biomedical text mining systems. J Biomed Discov Collab (2008) 2.07

The mouse Gene Expression Database (GXD): 2011 update. Nucleic Acids Res (2010) 2.07

Pathway databases and tools for their exploitation: benefits, current limitations and challenges. Mol Syst Biol (2009) 2.03

Systematic discovery and characterization of regulatory motifs in ENCODE TF binding experiments. Nucleic Acids Res (2013) 1.96

RTPrimerDB: the portal for real-time PCR primers and probes. Nucleic Acids Res (2008) 1.95

IMGT/3Dstructure-DB and IMGT/DomainGapAlign: a database and a tool for immunoglobulins or antibodies, T cell receptors, MHC, IgSF and MhcSF. Nucleic Acids Res (2009) 1.94

What everybody should know about the rat genome and its online resources. Nat Genet (2008) 1.94

Concept recognition for extracting protein interaction relations from biomedical text. Genome Biol (2008) 1.93

Annotating genes and genomes with DNA sequences extracted from biomedical articles. Bioinformatics (2011) 1.91

Building disease-specific drug-protein connectivity maps from molecular interaction networks and PubMed abstracts. PLoS Comput Biol (2009) 1.90

Prediction of human disease genes by human-mouse conserved coexpression analysis. PLoS Comput Biol (2008) 1.81

GeneDistiller--distilling candidate genes from linkage intervals. PLoS One (2008) 1.77

HINT: High-quality protein interactomes and their applications in understanding human disease. BMC Syst Biol (2012) 1.73

MitoCarta2.0: an updated inventory of mammalian mitochondrial proteins. Nucleic Acids Res (2015) 1.73

A systematic strategy for large-scale analysis of genotype phenotype correlations: identification of candidate genes involved in African trypanosomiasis. Nucleic Acids Res (2007) 1.73

Systems pharmacology of arrhythmias. Sci Signal (2010) 1.72

BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Nucleic Acids Res (2009) 1.70

IMGT®, the international ImMunoGeneTics information system® 25 years on. Nucleic Acids Res (2014) 1.64

TargetRNA: a tool for predicting targets of small RNA action in bacteria. Nucleic Acids Res (2008) 1.64

Gene expression levels are a target of recent natural selection in the human genome. Mol Biol Evol (2008) 1.63

Reconstruction of metabolic pathways for the cattle genome. BMC Syst Biol (2009) 1.63

Cataloguing the HIV type 1 human protein interaction network. AIDS Res Hum Retroviruses (2008) 1.61

Duffy (Fy), DARC, and neutropenia among women from the United States, Europe and the Caribbean. Br J Haematol (2008) 1.61

miRSel: automated extraction of associations between microRNAs and genes from the biomedical literature. BMC Bioinformatics (2010) 1.57

A MOD(ern) perspective on literature curation. Mol Genet Genomics (2010) 1.56

Regulation of glycan structures in animal tissues: transcript profiling of glycan-related genes. J Biol Chem (2008) 1.55

WHO-IUIS Nomenclature Subcommittee for immunoglobulins and T cell receptors report. Immunogenetics (2007) 1.54

Detection and correction of false segmental duplications caused by genome mis-assembly. Genome Biol (2010) 1.54

Comparison study of microarray meta-analysis methods. BMC Bioinformatics (2010) 1.49

Use of data-biased random walks on graphs for the retrieval of context-specific networks from genomic data. PLoS Comput Biol (2010) 1.47

DADA: Degree-Aware Algorithms for Network-Based Disease Gene Prioritization. BioData Min (2011) 1.44

Assessment of NER solutions against the first and second CALBC Silver Standard Corpus. J Biomed Semantics (2011) 1.43

Analytical approaches to RNA profiling data for the identification of genes enriched in specific cells. Nucleic Acids Res (2010) 1.41

Evolutionary plasticity of segmentation clock networks. Development (2011) 1.39

SIMAP--structuring the network of protein similarities. Nucleic Acids Res (2007) 1.37

A detailed genome-wide reconstruction of mouse metabolism based on human Recon 1. BMC Syst Biol (2010) 1.35

Moara: a Java library for extracting and normalizing gene and protein mentions. BMC Bioinformatics (2010) 1.33

Detection of gene orthology from gene co-expression and protein interaction networks. BMC Bioinformatics (2010) 1.32

Computational analysis of the human HSPH/HSPA/DNAJ family and cloning of a human HSPH/HSPA/DNAJ expression library. Cell Stress Chaperones (2008) 1.30

The transcription factor encyclopedia. Genome Biol (2012) 1.28

STARNET 2: a web-based tool for accelerating discovery of gene regulatory networks using microarray co-expression data. BMC Bioinformatics (2009) 1.28

HHMD: the human histone modification database. Nucleic Acids Res (2009) 1.27

Building and analyzing protein interactome networks by cross-species comparisons. BMC Syst Biol (2010) 1.27

Using rule-based natural language processing to improve disease normalization in biomedical text. J Am Med Inform Assoc (2012) 1.27

Integrated analysis of mutations, miRNA and mRNA expression in glioblastoma. BMC Syst Biol (2010) 1.26

G2Cdb: the Genes to Cognition database. Nucleic Acids Res (2008) 1.24

SPIKE: a database of highly curated human signaling pathways. Nucleic Acids Res (2010) 1.23

Forging links between human mental retardation-associated CNVs and mouse gene knockout models. PLoS Genet (2009) 1.23

Database for exploration of functional context of genes implicated in ovarian cancer. Nucleic Acids Res (2008) 1.21

Screensaver: an open source lab information management system (LIMS) for high throughput screening facilities. BMC Bioinformatics (2010) 1.19

Evading the annotation bottleneck: using sequence similarity to search non-sequence gene data. BMC Bioinformatics (2008) 1.19

PhenoHM: human-mouse comparative phenome-genome server. Nucleic Acids Res (2010) 1.16

tRNADB-CE: tRNA gene database curated manually by experts. Nucleic Acids Res (2008) 1.16

H-InvDB in 2009: extended database and data mining resources for human genes and transcripts. Nucleic Acids Res (2009) 1.16

NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res (2006) 48.10

NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res (2005) 37.39

GenBank. Nucleic Acids Res (2007) 25.54

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A (2002) 20.48

NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res (2006) 48.10

NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res (2005) 37.39

The minimum information about a genome sequence (MIGS) specification. Nat Biotechnol (2008) 31.04

NCBI Reference Sequences: current status, policy and new initiatives. Nucleic Acids Res (2008) 26.04

Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2005) 22.98

Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res (2005) 22.62

Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2007) 22.53

Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2008) 21.36

Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2006) 18.85

Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2006) 18.84

Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation. OMICS (2008) 18.69

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy. Nucleic Acids Res (2011) 14.04

Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2009) 12.51

Large-scale sequencing of human influenza reveals the dynamic nature of viral genome evolution. Nature (2005) 11.99

The influenza virus resource at the National Center for Biotechnology Information. J Virol (2007) 11.33

NCBI Reference Sequence project: update and current status. Nucleic Acids Res (2003) 11.30

Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2010) 10.97

The National Center for Biotechnology Information's Protein Clusters Database. Nucleic Acids Res (2008) 10.64

Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res (2010) 9.09

Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2011) 8.62

BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata. Nucleic Acids Res (2011) 6.69

Splign: algorithms for computing spliced alignments with identification of paralogs. Biol Direct (2008) 5.03

The Rice Annotation Project Database (RAP-DB): 2008 update. Nucleic Acids Res (2007) 4.23

The Genomic Standards Consortium. PLoS Biol (2011) 3.99

Comparative genomic analyses of seventeen Streptococcus pneumoniae strains: insights into the pneumococcal supragenome. J Bacteriol (2007) 3.62

Human immunodeficiency virus type 1, human protein interaction database at NCBI. Nucleic Acids Res (2008) 3.54

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Genome Res (2007) 3.13

Concept of sample in OMICS technology. OMICS (2006) 2.74

A web-based genotyping resource for viral sequences. Nucleic Acids Res (2004) 2.68

Genomic BLAST: custom-defined virtual databases for complete and unfinished genomes. FEMS Microbiol Lett (2002) 2.37

The completion of the Mammalian Gene Collection (MGC). Genome Res (2009) 2.21

Current status and new features of the Consensus Coding Sequence database. Nucleic Acids Res (2013) 2.19

FLAN: a web server for influenza virus genome annotation. Nucleic Acids Res (2007) 2.11

Improvements to pairwise sequence comparison (PASC): a genome-based web tool for virus classification. Arch Virol (2014) 2.09

Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Res (2010) 1.97

What everybody should know about the rat genome and its online resources. Nat Genet (2008) 1.94

National center for biotechnology information viral genomes project. J Virol (2004) 1.84

Improving gene annotation of complete viral genomes. Nucleic Acids Res (2003) 1.80

Tracking and coordinating an international curation effort for the CCDS Project. Database (Oxford) (2012) 1.78

RNAcentral: A vision for an international database of RNA sequences. RNA (2011) 1.73

Meeting report: the fifth Genomic Standards Consortium (GSC) workshop. OMICS (2008) 1.66

Assessing and managing risk when sharing aggregate genetic variant data. Nat Rev Genet (2011) 1.62

Cataloguing the HIV type 1 human protein interaction network. AIDS Res Hum Retroviruses (2008) 1.61

Solving the Problem: Genome Annotation Standards before the Data Deluge. Stand Genomic Sci (2011) 1.54

Towards BioDBcore: a community-defined information specification for biological databases. Database (Oxford) (2011) 1.24

Meeting Report from the Genomic Standards Consortium (GSC) Workshop 9. Stand Genomic Sci (2010) 1.10

PAirwise Sequence Comparison (PASC) and its application in the classification of filoviruses. Viruses (2012) 1.09

Towards Viral Genome Annotation Standards, Report from the 2010 NCBI Annotation Workshop. Viruses (2010) 0.97

eGenomics: Cataloguing our Complete Genome Collection. Comp Funct Genomics (2005) 0.93

Mining the NCBI influenza sequence database: adaptive grouping of BLAST results using precalculated neighbor indexing. PLoS Curr (2009) 0.91

Recent advances in biocuration: meeting report from the Fifth International Biocuration Conference. Database (Oxford) (2012) 0.89

Comparison of RefSeq protein-coding regions in human and vertebrate genomes. BMC Genomics (2013) 0.84

Plant genome resources at the national center for biotechnology information. Plant Physiol (2005) 0.82

Cryptic splice sites and split genes. Nucleic Acids Res (2011) 0.80

Meeting Report: "Metagenomics, Metadata and Meta-analysis" (M3) Workshop at the Pacific Symposium on Biocomputing 2010. Stand Genomic Sci (2010) 0.76

Accessing the human genome. Curr Protoc Hum Genet (2002) 0.75