Published in Genome Biol on January 01, 2006
Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm. PLoS Biol (2008) 6.30
Global analysis of patterns of gene expression during Drosophila embryogenesis. Genome Biol (2007) 6.27
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Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions. Genome Biol (2009) 5.23
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Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm. PLoS Biol (2008) 6.30
A quantitative spatiotemporal atlas of gene expression in the Drosophila blastoderm. Cell (2008) 5.63
Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions. Genome Biol (2009) 5.23
Serendipitous discovery of Wolbachia genomes in multiple Drosophila species. Genome Biol (2005) 4.42
Noise minimization in eukaryotic gene expression. PLoS Biol (2004) 4.36
Exploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering. Genome Biol (2002) 4.24
Large-scale turnover of functional transcription factor binding sites in Drosophila. PLoS Comput Biol (2006) 4.01
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Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura. Genome Biol (2004) 3.36
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Functional genomic analysis of the rates of protein evolution. Proc Natl Acad Sci U S A (2005) 3.04
Widespread discordance of gene trees with species tree in Drosophila: evidence for incomplete lineage sorting. PLoS Genet (2006) 3.01
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The role of chromatin accessibility in directing the widespread, overlapping patterns of Drosophila transcription factor binding. Genome Biol (2011) 2.68
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Quantitative models of the mechanisms that control genome-wide patterns of transcription factor binding during early Drosophila development. PLoS Genet (2011) 2.65
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Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution II: dynamics. Genome Biol (2006) 2.09
Control of embryonic stem cell lineage commitment by core promoter factor, TAF3. Cell (2011) 2.00
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Coevolution of gene expression among interacting proteins. Proc Natl Acad Sci U S A (2004) 1.96
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Zelda binding in the early Drosophila melanogaster embryo marks regions subsequently activated at the maternal-to-zygotic transition. PLoS Genet (2011) 1.95
Evolutionary mirages: selection on binding site composition creates the illusion of conserved grammars in Drosophila enhancers. PLoS Genet (2010) 1.92
The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources for the Saccharomyces sensu stricto Genus. G3 (Bethesda) (2011) 1.86
Identification of regulatory elements using a feature selection method. Bioinformatics (2002) 1.80
When is scene identification just texture recognition? Vision Res (2004) 1.79
Aging and gene expression in the primate brain. PLoS Biol (2005) 1.76
Cellular resolution volumetric in vivo retinal imaging with adaptive optics-optical coherence tomography. Opt Express (2009) 1.67
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Identification of oligonucleotide sequences that direct the movement of the Escherichia coli FtsK translocase. Proc Natl Acad Sci U S A (2005) 1.66
A condensin-like dosage compensation complex acts at a distance to control expression throughout the genome. Genes Dev (2009) 1.64
Adaptation of a support vector machine algorithm for segmentation and visualization of retinal structures in volumetric optical coherence tomography data sets. J Biomed Opt (2007) 1.62
Dynamic reprogramming of chromatin accessibility during Drosophila embryo development. Genome Biol (2011) 1.61
Genome-wide analysis of alternative pre-mRNA splicing and RNA-binding specificities of the Drosophila hnRNP A/B family members. Mol Cell (2009) 1.52
A second-generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence. Genome Res (2012) 1.48
Automatic image analysis for gene expression patterns of fly embryos. BMC Cell Biol (2007) 1.47
Genome-wide transcriptional response of Silurana (Xenopus) tropicalis to infection with the deadly chytrid fungus. PLoS One (2009) 1.47
Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments. BMC Bioinformatics (2006) 1.44
Phylogenetically and spatially conserved word pairs associated with gene-expression changes in yeasts. Genome Biol (2003) 1.40
DNA regions bound at low occupancy by transcription factors do not drive patterned reporter gene expression in Drosophila. Proc Natl Acad Sci U S A (2012) 1.39
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Generation of prion transmission barriers by mutational control of amyloid conformations. Nature (2003) 1.36
Segmentation of three-dimensional retinal image data. IEEE Trans Vis Comput Graph (2007) 1.36
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Classification of grass pollen through the quantitative analysis of surface ornamentation and texture. Proc Biol Sci (2013) 1.27
Natural-scene statistics predict how the figure-ground cue of convexity affects human depth perception. J Neurosci (2010) 1.25
Global gene expression profiles for life stages of the deadly amphibian pathogen Batrachochytrium dendrobatidis. Proc Natl Acad Sci U S A (2008) 1.25
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A conserved developmental patterning network produces quantitatively different output in multiple species of Drosophila. PLoS Genet (2011) 1.17
Analyzing and tracking burning structures in lean premixed hydrogen flames. IEEE Trans Vis Comput Graph (2010) 1.17