Published in Annu Rev Plant Biol on January 01, 2007
Genome-wide mapping of alternative splicing in Arabidopsis thaliana. Genome Res (2009) 5.24
Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome. Genome Res (2010) 3.34
Alternative splicing: a pivotal step between eukaryotic transcription and translation. Nat Rev Mol Cell Biol (2013) 3.33
Complexity of the alternative splicing landscape in plants. Plant Cell (2013) 2.62
A critical role for the TIFY motif in repression of jasmonate signaling by a stabilized splice variant of the JASMONATE ZIM-domain protein JAZ10 in Arabidopsis. Plant Cell (2009) 2.46
Coping with stresses: roles of calcium- and calcium/calmodulin-regulated gene expression. Plant Cell (2011) 2.08
Alternative splicing in plants--coming of age. Trends Plant Sci (2012) 1.93
One hundred years of pleiotropy: a retrospective. Genetics (2010) 1.91
Genome-wide landscape of polyadenylation in Arabidopsis provides evidence for extensive alternative polyadenylation. Proc Natl Acad Sci U S A (2011) 1.85
The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA. Genome Res (2013) 1.78
Alternative splicing mediates responses of the Arabidopsis circadian clock to temperature changes. Plant Cell (2012) 1.74
At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana. Genome Biol (2008) 1.62
A genomic and expression compendium of the expanded PEBP gene family from maize. Plant Physiol (2007) 1.61
Cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control. Mol Syst Biol (2010) 1.56
Alternative splicing expands the repertoire of dominant JAZ repressors of jasmonate signaling. Plant J (2010) 1.51
Expression of aberrant forms of AUXIN RESPONSE FACTOR8 stimulates parthenocarpy in Arabidopsis and tomato. Plant Physiol (2007) 1.48
Riboswitch-dependent gene regulation and its evolution in the plant kingdom. Genes Dev (2007) 1.47
Alternative splicing and tumor progression. Curr Genomics (2008) 1.43
Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis. Nucleic Acids Res (2008) 1.43
Top hits in contemporary JAZ: an update on jasmonate signaling. Phytochemistry (2009) 1.40
A deep survey of alternative splicing in grape reveals changes in the splicing machinery related to tissue, stress condition and genotype. BMC Plant Biol (2014) 1.37
Arginine methylation mediated by the Arabidopsis homolog of PRMT5 is essential for proper pre-mRNA splicing. Proc Natl Acad Sci U S A (2010) 1.36
Regulation of plant developmental processes by a novel splicing factor. PLoS One (2007) 1.34
Two alternatively spliced isoforms of the Arabidopsis SR45 protein have distinct roles during normal plant development. Plant Physiol (2009) 1.30
A maize CONSTANS-like gene, conz1, exhibits distinct diurnal expression patterns in varied photoperiods. Planta (2008) 1.26
SpliceGrapher: detecting patterns of alternative splicing from RNA-Seq data in the context of gene models and EST data. Genome Biol (2012) 1.26
A survey of the sorghum transcriptome using single-molecule long reads. Nat Commun (2016) 1.24
Comparative analysis indicates that alternative splicing in plants has a limited role in functional expansion of the proteome. BMC Genomics (2009) 1.22
SKIP is a component of the spliceosome linking alternative splicing and the circadian clock in Arabidopsis. Plant Cell (2012) 1.21
Cross-species EST alignments reveal novel and conserved alternative splicing events in legumes. BMC Plant Biol (2008) 1.21
Involvement of the nuclear cap-binding protein complex in alternative splicing in Arabidopsis thaliana. Nucleic Acids Res (2009) 1.19
Comparative analysis of syntenic genes in grass genomes reveals accelerated rates of gene structure and coding sequence evolution in polyploid wheat. Plant Physiol (2012) 1.19
Alternative splicing, activation of cryptic exons and amino acid substitutions in carotenoid biosynthetic genes are associated with lutein accumulation in wheat endosperm. Funct Integr Genomics (2009) 1.18
Genome-wide analysis of alternative splicing of pre-mRNA under salt stress in Arabidopsis. BMC Genomics (2014) 1.16
Comparable contributions of structural-functional constraints and expression level to the rate of protein sequence evolution. Biol Direct (2008) 1.15
Global dissection of alternative splicing in paleopolyploid soybean. Plant Cell (2014) 1.15
Intron-mediated alternative splicing of Arabidopsis P5CS1 and its association with natural variation in proline and climate adaptation. Proc Natl Acad Sci U S A (2012) 1.12
Mapping gene activity of Arabidopsis root hairs. Genome Biol (2013) 1.10
Localization and dynamics of nuclear speckles in plants. Plant Physiol (2011) 1.09
Closing plant stomata requires a homolog of an aluminum-activated malate transporter. Plant Cell Physiol (2010) 1.09
On the physiological significance of alternative splicing events in higher plants. Protoplasma (2012) 1.09
A role for SR proteins in plant stress responses. Plant Signal Behav (2011) 1.08
Multifunctionality and diversity of GDSL esterase/lipase gene family in rice (Oryza sativa L. japonica) genome: new insights from bioinformatics analysis. BMC Genomics (2012) 1.07
The conserved splicing factor SUA controls alternative splicing of the developmental regulator ABI3 in Arabidopsis. Plant Cell (2010) 1.06
Alternative splicing and gene duplication differentially shaped the regulation of isochorismate synthase in Populus and Arabidopsis. Proc Natl Acad Sci U S A (2009) 1.05
Genome-wide analysis of alternative splicing in Chlamydomonas reinhardtii. BMC Genomics (2010) 1.05
Induction of vacuolar invertase inhibitor mRNA in potato tubers contributes to cold-induced sweetening resistance and includes spliced hybrid mRNA variants. J Exp Bot (2011) 1.05
Alternative splicing at NAGNAG acceptors in Arabidopsis thaliana SR and SR-related protein-coding genes. BMC Genomics (2008) 1.04
Deciphering the plant splicing code: experimental and computational approaches for predicting alternative splicing and splicing regulatory elements. Front Plant Sci (2012) 1.02
Characterization of a viral synergism in the monocot Brachypodium distachyon reveals distinctly altered host molecular processes associated with disease. Plant Physiol (2012) 1.02
Post-transcriptional and post-translational regulations of drought and heat response in plants: a spider's web of mechanisms. Front Plant Sci (2015) 1.01
Genome-wide analysis of light-regulated alternative splicing mediated by photoreceptors in Physcomitrella patens. Genome Biol (2014) 1.01
Polypyrimidine tract binding protein homologs from Arabidopsis are key regulators of alternative splicing with implications in fundamental developmental processes. Plant Cell (2012) 1.01
An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana. Nucleic Acids Res (2012) 1.00
RNA-Seq analysis reveals new gene models and alternative splicing in the fungal pathogen Fusarium graminearum. BMC Genomics (2013) 0.99
Extensive changes to alternative splicing patterns following allopolyploidy in natural and resynthesized polyploids. Proc Natl Acad Sci U S A (2011) 0.99
Negative feedback control of jasmonate signaling by an alternative splice variant of JAZ10. Plant Physiol (2013) 0.99
Conserved alternative splicing of Arabidopsis transthyretin-like determines protein localization and S-allantoin synthesis in peroxisomes. Plant Cell (2010) 0.98
Genome-wide landscape of alternative splicing events in Brachypodium distachyon. DNA Res (2013) 0.97
Genome-Wide Analysis of Heat-Sensitive Alternative Splicing in Physcomitrella patens. Plant Physiol (2014) 0.97
An ALMT1 gene cluster controlling aluminum tolerance at the Alt4 locus of rye (Secale cereale L). Genetics (2008) 0.96
Analyses of in vivo interaction and mobility of two spliceosomal proteins using FRAP and BiFC. PLoS One (2008) 0.95
A novel type III polyketide synthase encoded by a three-intron gene from Polygonum cuspidatum. Planta (2008) 0.95
The differential transcription network between embryo and endosperm in the early developing maize seed. Plant Physiol (2013) 0.95
Characterization of EMU, the Arabidopsis homolog of the yeast THO complex member HPR1. RNA (2010) 0.94
A KH-domain RNA-binding protein interacts with FIERY2/CTD phosphatase-like 1 and splicing factors and is important for pre-mRNA splicing in Arabidopsis. PLoS Genet (2013) 0.94
Post-transcriptional regulation of gene expression in plants during abiotic stress. Int J Mol Sci (2009) 0.94
Plant spliceosomal introns: not only cut and paste. Curr Genomics (2008) 0.94
Characterization of transcriptional complexity during longissimus muscle development in bovines using high-throughput sequencing. PLoS One (2013) 0.93
Comparisons of computational methods for differential alternative splicing detection using RNA-seq in plant systems. BMC Bioinformatics (2014) 0.93
Fine mapping of a major QTL for flag leaf width in rice, qFLW4, which might be caused by alternative splicing of NAL1. Plant Cell Rep (2011) 0.93
Medicago truncatula contains a second gene encoding a plastid located glutamine synthetase exclusively expressed in developing seeds. BMC Plant Biol (2010) 0.93
Comparative analysis of serine/arginine-rich proteins across 27 eukaryotes: insights into sub-family classification and extent of alternative splicing. PLoS One (2011) 0.92
Differential SAGE analysis in Arabidopsis uncovers increased transcriptome complexity in response to low temperature. BMC Genomics (2008) 0.92
Alternative splicing of anciently exonized 5S rRNA regulates plant transcription factor TFIIIA. Genome Res (2009) 0.92
RNA G-Quadruplexes in the model plant species Arabidopsis thaliana: prevalence and possible functional roles. Nucleic Acids Res (2010) 0.92
Small changes in ambient temperature affect alternative splicing in Arabidopsis thaliana. Plant Signal Behav (2013) 0.92
The spliceosome-activating complex: molecular mechanisms underlying the function of a pleiotropic regulator. Front Plant Sci (2012) 0.90
Wrinkled1, a ubiquitous regulator in oil accumulating tissues from Arabidopsis embryos to oil palm mesocarp. PLoS One (2013) 0.90
The Role of Polypyrimidine Tract-Binding Proteins and Other hnRNP Proteins in Plant Splicing Regulation. Front Plant Sci (2012) 0.90
The Gibberellic Acid Stimulated-Like gene family in maize and its role in lateral root development. Plant Physiol (2009) 0.89
A plant 5S ribosomal RNA mimic regulates alternative splicing of transcription factor IIIA pre-mRNAs. Nat Struct Mol Biol (2009) 0.89
Mechanism of cytoplasmic mRNA translation. Arabidopsis Book (2015) 0.89
Global Plant Stress Signaling: Reactive Oxygen Species at the Cross-Road. Front Plant Sci (2016) 0.88
Functional analysis of splice variant expression of MADS AFFECTING FLOWERING 2 of Arabidopsis thaliana. Plant Mol Biol (2012) 0.88
Genome-wide analysis of alternative splicing in Volvox carteri. BMC Genomics (2014) 0.87
Battle through signaling between wheat and the fungal pathogen Septoria tritici revealed by proteomics and phosphoproteomics. Mol Cell Proteomics (2013) 0.87
RNA-Binding Proteins in Plant Immunity. J Pathog (2011) 0.86
Alternative splicing in plant immunity. Int J Mol Sci (2014) 0.86
Support vector machines-based identification of alternative splicing in Arabidopsis thaliana from whole-genome tiling arrays. BMC Bioinformatics (2011) 0.86
Genome-wide identification of evolutionarily conserved alternative splicing events in flowering plants. Front Bioeng Biotechnol (2015) 0.85
Dynamic nucleocytoplasmic shuttling of an Arabidopsis SR splicing factor: role of the RNA-binding domains. Plant Physiol (2010) 0.85
Alternative splicing studies of the reactive oxygen species gene network in Populus reveal two isoforms of high-isoelectric-point superoxide dismutase. Plant Physiol (2009) 0.85
The SERRATE protein is involved in alternative splicing in Arabidopsis thaliana. Nucleic Acids Res (2013) 0.85
Allelic variation, alternative splicing and expression analysis of Psy1 gene in Hordeum chilense Roem. et Schult. PLoS One (2011) 0.85
An interspecific plant hybrid shows novel changes in parental splice forms of genes for splicing factors. Genetics (2010) 0.84
Intron-mediated alternative splicing of WOOD-ASSOCIATED NAC TRANSCRIPTION FACTOR1B regulates cell wall thickening during fiber development in Populus species. Plant Physiol (2014) 0.84
CCA1 alternative splicing as a way of linking the circadian clock to temperature response in Arabidopsis. Plant Signal Behav (2012) 0.84
Genome-wide survey of Alternative Splicing in Sorghum Bicolor. Physiol Mol Biol Plants (2014) 0.84
A single ancient origin for prototypical serine/arginine-rich splicing factors. Plant Physiol (2011) 0.83