Published in Trends Plant Sci on June 27, 2012
Alternative splicing at the intersection of biological timing, development, and stress responses. Plant Cell (2013) 2.63
Complexity of the alternative splicing landscape in plants. Plant Cell (2013) 2.62
The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes. Nat Commun (2014) 2.43
A deep survey of alternative splicing in grape reveals changes in the splicing machinery related to tissue, stress condition and genotype. BMC Plant Biol (2014) 1.37
A chloroplast retrograde signal regulates nuclear alternative splicing. Science (2014) 1.36
Genome-wide analysis of alternative splicing in Zea mays: landscape and genetic regulation. Plant Cell (2014) 1.07
Transcriptome-scale homoeolog-specific transcript assemblies of bread wheat. BMC Genomics (2012) 1.05
STIFDB2: an updated version of plant stress-responsive transcription factor database with additional stress signals, stress-responsive transcription factor binding sites and stress-responsive genes in Arabidopsis and rice. Plant Cell Physiol (2013) 1.04
Genome-wide analysis of light-regulated alternative splicing mediated by photoreceptors in Physcomitrella patens. Genome Biol (2014) 1.01
Polypyrimidine tract binding protein homologs from Arabidopsis are key regulators of alternative splicing with implications in fundamental developmental processes. Plant Cell (2012) 1.01
Phytochrome controls alternative splicing to mediate light responses in Arabidopsis. Proc Natl Acad Sci U S A (2014) 1.01
An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana. Nucleic Acids Res (2012) 1.00
Polyploidy and novelty: Gottlieb's legacy. Philos Trans R Soc Lond B Biol Sci (2014) 0.99
Genome-wide landscape of alternative splicing events in Brachypodium distachyon. DNA Res (2013) 0.97
Genome-Wide Analysis of Heat-Sensitive Alternative Splicing in Physcomitrella patens. Plant Physiol (2014) 0.97
Wheat Stripe Rust Resistance Protein WKS1 Reduces the Ability of the Thylakoid-Associated Ascorbate Peroxidase to Detoxify Reactive Oxygen Species. Plant Cell (2015) 0.97
Deep transcriptome sequencing provides new insights into the structural and functional organization of the wheat genome. Genome Biol (2015) 0.97
Unmasking alternative splicing inside protein-coding exons defines exitrons and their role in proteome plasticity. Genome Res (2015) 0.95
Plant MYB Transcription Factors: Their Role in Drought Response Mechanisms. Int J Mol Sci (2015) 0.94
LSM proteins provide accurate splicing and decay of selected transcripts to ensure normal Arabidopsis development. Plant Cell (2012) 0.94
Dynamic regulation of genome-wide pre-mRNA splicing and stress tolerance by the Sm-like protein LSm5 in Arabidopsis. Genome Biol (2014) 0.93
Comparisons of computational methods for differential alternative splicing detection using RNA-seq in plant systems. BMC Bioinformatics (2014) 0.93
Alternative splicing and nonsense-mediated decay of circadian clock genes under environmental stress conditions in Arabidopsis. BMC Plant Biol (2014) 0.92
Small changes in ambient temperature affect alternative splicing in Arabidopsis thaliana. Plant Signal Behav (2013) 0.92
Mechanism of cytoplasmic mRNA translation. Arabidopsis Book (2015) 0.89
Genome-wide analysis of alternative splicing in Volvox carteri. BMC Genomics (2014) 0.87
Alternative Splicing Substantially Diversifies the Transcriptome during Early Photomorphogenesis and Correlates with the Energy Availability in Arabidopsis. Plant Cell (2016) 0.85
The SERRATE protein is involved in alternative splicing in Arabidopsis thaliana. Nucleic Acids Res (2013) 0.85
Genome-wide identification of evolutionarily conserved alternative splicing events in flowering plants. Front Bioeng Biotechnol (2015) 0.85
Intron-mediated alternative splicing of WOOD-ASSOCIATED NAC TRANSCRIPTION FACTOR1B regulates cell wall thickening during fiber development in Populus species. Plant Physiol (2014) 0.84
De novo assembly of the transcriptome of the non-model plant Streptocarpus rexii employing a novel heuristic to recover locus-specific transcript clusters. PLoS One (2013) 0.83
Thermoplasticity in the plant circadian clock: how plants tell the time-perature. Plant Signal Behav (2012) 0.83
Alternative splicing of transcription factors in plant responses to low temperature stress: mechanisms and functions. Planta (2013) 0.82
Differential gene expression and alternative splicing between diploid and tetraploid watermelon. J Exp Bot (2014) 0.81
RNA around the clock - regulation at the RNA level in biological timing. Front Plant Sci (2015) 0.80
An Arabidopsis PWI and RRM motif-containing protein is critical for pre-mRNA splicing and ABA responses. Nat Commun (2015) 0.80
An Rtf2 Domain-Containing Protein Influences Pre-mRNA Splicing and Is Essential for Embryonic Development in Arabidopsis thaliana. Genetics (2015) 0.80
The role of canonical and noncanonical pre-mRNA splicing in plant stress responses. Biomed Res Int (2012) 0.80
Pre-mRNA Splicing in Plants: In Vivo Functions of RNA-Binding Proteins Implicated in the Splicing Process. Biomolecules (2015) 0.80
Circadian rhythms and post-transcriptional regulation in higher plants. Front Plant Sci (2015) 0.79
AtRTD - a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana. New Phytol (2015) 0.79
Seed Dormancy in Arabidopsis Requires Self-Binding Ability of DOG1 Protein and the Presence of Multiple Isoforms Generated by Alternative Splicing. PLoS Genet (2015) 0.79
RNA function and phosphorus use by photosynthetic organisms. Front Plant Sci (2013) 0.79
Changes in RNA Splicing in Developing Soybean (Glycine max) Embryos. Biology (Basel) (2013) 0.78
Lost in Translation: Pitfalls in Deciphering Plant Alternative Splicing Transcripts. Plant Cell (2015) 0.78
Genome-wide cataloging and analysis of alternatively spliced genes in cereal crops. BMC Genomics (2015) 0.78
Applications and challenges of next-generation sequencing in Brassica species. Planta (2013) 0.77
Comparative analyses between retained introns and constitutively spliced introns in Arabidopsis thaliana using random forest and support vector machine. PLoS One (2014) 0.77
Identification of alternative splicing events by RNA sequencing in early growth tomato fruits. BMC Genomics (2015) 0.77
Conservation and functional influence of alternative splicing in wood formation of Populus and Eucalyptus. BMC Genomics (2014) 0.77
Alternative splicing of mini-exons in the Arabidopsis leaf rust receptor-like kinase LRK10 genes affects subcellular localisation. Plant Cell Rep (2014) 0.76
Genome-wide identification, splicing, and expression analysis of the myosin gene family in maize (Zea mays). J Exp Bot (2013) 0.76
BEM46 shows eisosomal localization and association with tryptophan-derived auxin pathway in Neurospora crassa. Eukaryot Cell (2014) 0.76
The Arabidopsis sickle Mutant Exhibits Altered Circadian Clock Responses to Cool Temperatures and Temperature-Dependent Alternative Splicing. Plant Cell (2016) 0.76
A new alternative in plant retrograde signaling. Genome Biol (2014) 0.76
Herboxidiene triggers splicing repression and abiotic stress responses in plants. BMC Genomics (2017) 0.75
Transient gene expression in tobacco using Gibson assembly and the Gene Gun. J Vis Exp (2014) 0.75
Alternative splicing of basic chitinase gene PR3b in the low-nicotine mutants of Nicotiana tabacum L. cv. Burley 21. J Exp Bot (2016) 0.75
Schizophyllum commune has an extensive and functional alternative splicing repertoire. Sci Rep (2016) 0.75
Regulation of Non-coding RNAs in Heat Stress Responses of Plants. Front Plant Sci (2016) 0.75
Functional proteomics of barley and barley chloroplasts - strategies, methods and perspectives. Front Plant Sci (2013) 0.75
Alternative Splicing in Plant Genes: A Means of Regulating the Environmental Fitness of Plants. Int J Mol Sci (2017) 0.75
Integrating omics and alternative splicing reveals insights into grape response to high temperature. Plant Physiol (2017) 0.75
Trait to gene analysis reveals that allelic variation in three genes determines seed vigour. New Phytol (2016) 0.75
Alternative Splicing of Barley Clock Genes in Response to Low Temperature. PLoS One (2016) 0.75
Splicing-related genes are alternatively spliced upon changes in ambient temperatures in plants. PLoS One (2017) 0.75
Tiling Assembly: a new tool for reference annotation-independent transcript assembly and novel gene identification by RNA-sequencing. DNA Res (2015) 0.75
Involvement of Alternative Splicing in Barley Seed Germination. PLoS One (2016) 0.75
Response of Gene Expression and Alternative Splicing to Distinct Growth Environments in Tomato. Int J Mol Sci (2017) 0.75
Transcriptome Profiling Revealed Stress-Induced and Disease Resistance Genes Up-Regulated in PRSV Resistant Transgenic Papaya. Front Plant Sci (2016) 0.75
Alternative splicing in tomato pollen in response to heat stress. DNA Res (2016) 0.75
Regulation of FT splicing by an endogenous cue in temperate grasses. Nat Commun (2017) 0.75
Polyribosomal RNA-Seq reveals the decreased complexity and diversity of the Arabidopsis translatome. PLoS One (2015) 0.75
Identification of a Novel Alternative Splicing Variant of VvPMA1 in Grape Root under Salinity. Front Plant Sci (2017) 0.75
Alternative splicing affects the targeting sequence of peroxisome proteins in Arabidopsis. Plant Cell Rep (2017) 0.75
Genome-Wide Analysis of Alternative Splicing Provides Insights into Stress Adaptation of the Pacific Oyster. Mar Biotechnol (NY) (2016) 0.75
Functional differentiation and spatial-temporal co-expression networks of the NBS-encoding gene family in Jilin ginseng, Panax ginseng C.A. Meyer. PLoS One (2017) 0.75
Molecular cloning and characterization of two novel genes from hexaploid wheat that encode double PR-1 domains coupled with a receptor-like protein kinase. Mol Genet Genomics (2017) 0.75
Genetic, epigenetic and exogenetic information in development and evolution. Interface Focus (2017) 0.75
Intron retention as a component of regulated gene expression programs. Hum Genet (2017) 0.75
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing. Nat Genet (2008) 24.51
Mechanisms of alternative pre-messenger RNA splicing. Annu Rev Biochem (2003) 21.11
Understanding alternative splicing: towards a cellular code. Nat Rev Mol Cell Biol (2005) 13.21
Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes. Cell (2011) 10.56
Alternative splicing: increasing diversity in the proteomic world. Trends Genet (2001) 10.44
Alternative splicing: new insights from global analyses. Cell (2006) 10.31
The C-terminal domain of RNA polymerase II couples mRNA processing to transcription. Nature (1997) 8.86
Regulation of alternative splicing by histone modifications. Science (2010) 7.98
Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements. Nature (2007) 7.12
Deciphering the splicing code. Nature (2010) 6.27
Function of alternative splicing. Gene (2004) 5.95
Chromatin organization marks exon-intron structure. Nat Struct Mol Biol (2009) 5.90
Genome-wide mapping of alternative splicing in Arabidopsis thaliana. Genome Res (2009) 5.24
Nucleosome positioning as a determinant of exon recognition. Nat Struct Mol Biol (2009) 5.14
Multiple reference genomes and transcriptomes for Arabidopsis thaliana. Nature (2011) 5.13
Ultraconserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decay. Genes Dev (2007) 4.75
Epigenetics in alternative pre-mRNA splicing. Cell (2011) 4.74
Genome-wide analysis of PTB-RNA interactions reveals a strategy used by the general splicing repressor to modulate exon inclusion or skipping. Mol Cell (2009) 4.71
Genomewide comparative analysis of alternative splicing in plants. Proc Natl Acad Sci U S A (2006) 4.51
Biased chromatin signatures around polyadenylation sites and exons. Mol Cell (2009) 3.74
Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis. Genome Res (2012) 3.10
Alternative splicing of pre-messenger RNAs in plants in the genomic era. Annu Rev Plant Biol (2007) 3.09
The evolving roles of alternative splicing. Curr Opin Struct Biol (2004) 2.99
Nonsense-mediated mRNA decay in human cells: mechanistic insights, functions beyond quality control and the double-life of NMD factors. Cell Mol Life Sci (2009) 2.79
Global analysis of nascent RNA reveals transcriptional pausing in terminal exons. Mol Cell (2010) 2.75
Pre-mRNA splicing in higher plants. Trends Plant Sci (2000) 2.59
Execution of nonsense-mediated mRNA decay: what defines a substrate? Curr Opin Cell Biol (2009) 2.59
Refined annotation of the Arabidopsis genome by complete expressed sequence tag mapping. Plant Physiol (2003) 2.50
Splicing-dependent RNA polymerase pausing in yeast. Mol Cell (2010) 2.49
Intron retention is a major phenomenon in alternative splicing in Arabidopsis. Plant J (2004) 2.42
Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis. BMC Genomics (2006) 2.41
Autoregulation of FCA pre-mRNA processing controls Arabidopsis flowering time. EMBO J (2003) 2.40
hnRNP proteins and splicing control. Adv Exp Med Biol (2007) 2.39
Genome-wide analyses of alternative splicing in plants: opportunities and challenges. Genome Res (2008) 2.30
Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis. Nucleic Acids Res (2011) 2.26
Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequences. Nucleic Acids Res (2004) 2.19
Alternative splicing of pre-mRNAs of Arabidopsis serine/arginine-rich proteins: regulation by hormones and stresses. Plant J (2007) 2.17
Regulation of alternative splicing by reversible protein phosphorylation. J Biol Chem (2007) 2.07
Signals and their transduction pathways regulating alternative splicing: a new dimension of the human genome. Hum Mol Genet (2002) 1.98
The Arabidopsis splicing factor SR1 is regulated by alternative splicing. Plant Mol Biol (2000) 1.96
A methyl transferase links the circadian clock to the regulation of alternative splicing. Nature (2010) 1.88
Circadian control of global gene expression patterns. Annu Rev Genet (2010) 1.85
Both introns and long 3'-UTRs operate as cis-acting elements to trigger nonsense-mediated decay in plants. Nucleic Acids Res (2006) 1.76
Alternative splicing mediates responses of the Arabidopsis circadian clock to temperature changes. Plant Cell (2012) 1.74
Interplay between cold-responsive gene regulation, metabolism and RNA processing during plant cold acclimation. Curr Opin Plant Biol (2007) 1.70
Inter-kingdom conservation of mechanism of nonsense-mediated mRNA decay. EMBO J (2008) 1.68
KNOX lost the OX: the Arabidopsis KNATM gene defines a novel class of KNOX transcriptional regulators missing the homeodomain. Plant Cell (2008) 1.68
Role of plant RNA-binding proteins in development, stress response and genome organization. Trends Plant Sci (2009) 1.66
The transcription elongation factor CA150 interacts with RNA polymerase II and the pre-mRNA splicing factor SF1. Mol Cell Biol (2001) 1.64
UPF1 is required for nonsense-mediated mRNA decay (NMD) and RNAi in Arabidopsis. Plant J (2006) 1.64
UPF3 suppresses aberrant spliced mRNA in Arabidopsis. Plant J (2005) 1.62
The structural and dynamic basis of Ets-1 DNA binding autoinhibition. J Biol Chem (2004) 1.62
RNA polymerase II conducts a symphony of pre-mRNA processing activities. Biochim Biophys Acta (2002) 1.61
Chromatin density and splicing destiny: on the cross-talk between chromatin structure and splicing. EMBO J (2010) 1.53
A 10 residue motif at the C-terminus of the RNA pol II CTD is required for transcription, splicing and 3' end processing. EMBO J (2003) 1.50
The lba1 mutation of UPF1 RNA helicase involved in nonsense-mediated mRNA decay causes pleiotropic phenotypic changes and altered sugar signalling in Arabidopsis. Plant J (2006) 1.47
Evolutionary conservation and regulation of particular alternative splicing events in plant SR proteins. Nucleic Acids Res (2006) 1.47
Analysis of the cDNAs of hypothetical genes on Arabidopsis chromosome 2 reveals numerous transcript variants. Plant Physiol (2005) 1.44
Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis. Nucleic Acids Res (2008) 1.43
CIRCADIAN CLOCK ASSOCIATED1 and LATE ELONGATED HYPOCOTYL function synergistically in the circadian clock of Arabidopsis. Plant Physiol (2009) 1.37
Phosphoproteomics reveals extensive in vivo phosphorylation of Arabidopsis proteins involved in RNA metabolism. Nucleic Acids Res (2006) 1.34
Type II protein arginine methyltransferase 5 (PRMT5) is required for circadian period determination in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2010) 1.33
Auto-regulation of the circadian slave oscillator component AtGRP7 and regulation of its targets is impaired by a single RNA recognition motif point mutation. Plant J (2007) 1.32
Powdery mildew-induced Mla mRNAs are alternatively spliced and contain multiple upstream open reading frames. Plant Physiol (2003) 1.31
Differential expression of alternatively spliced mRNAs of Arabidopsis SR protein homologs, atSR30 and atSR45a, in response to environmental stress. Plant Cell Physiol (2007) 1.30
Two alternatively spliced isoforms of the Arabidopsis SR45 protein have distinct roles during normal plant development. Plant Physiol (2009) 1.30
Two splice variants of the IDD14 transcription factor competitively form nonfunctional heterodimers which may regulate starch metabolism. Nat Commun (2011) 1.27
The CTD role in cotranscriptional RNA processing and surveillance. FEBS Lett (2008) 1.27
Arabidopsis UPF1 RNA helicase for nonsense-mediated mRNA decay is involved in seed size control and is essential for growth. Plant Cell Physiol (2006) 1.26
Three-amino acid extension loop homeodomain proteins Meis2 and TGIF differentially regulate transcription. J Biol Chem (2000) 1.25
Posttranslational regulation of CIRCADIAN CLOCK ASSOCIATED1 in the circadian oscillator of Arabidopsis. Plant Physiol (2009) 1.22
Phosphorylation switches the general splicing repressor SRp38 to a sequence-specific activator. Nat Struct Mol Biol (2008) 1.22
Cross-species EST alignments reveal novel and conserved alternative splicing events in legumes. BMC Plant Biol (2008) 1.21
Involvement of the nuclear cap-binding protein complex in alternative splicing in Arabidopsis thaliana. Nucleic Acids Res (2009) 1.19
More than a splicing code: integrating the role of RNA, chromatin and non-coding RNA in alternative splicing regulation. Curr Opin Genet Dev (2011) 1.18
A plethora of plant serine/arginine-rich proteins: redundancy or evolution of novel gene functions? Biochem Soc Trans (2004) 1.17
Arabidopsis SMG7 protein is required for exit from meiosis. J Cell Sci (2008) 1.15
Stability of plant mRNAs depends on the length of the 3'-untranslated region. Biochemistry (Mosc) (2006) 1.13
Allele-specific, bidirectional silencing of an alcohol dehydrogenase gene in different organs of interspecific diploid cotton hybrids. Genetics (2005) 1.13
Alternative splicing modulation by a LAMMER kinase impinges on developmental and transcriptome expression. Plant Cell (2003) 1.13
Alternative splicing of the auxin biosynthesis gene YUCCA4 determines its subcellular compartmentation. Plant J (2012) 1.12
Extensive coupling of alternative splicing of pre-mRNAs of serine/arginine (SR) genes with nonsense-mediated decay. New Phytol (2009) 1.12
Plant upstream ORFs can trigger nonsense-mediated mRNA decay in a size-dependent manner. Plant Mol Biol (2009) 1.12
Survey of conserved alternative splicing events of mRNAs encoding SR proteins in land plants. Mol Biol Evol (2006) 1.11
Plant development: a TALE story. C R Biol (2010) 1.09
A role for SR proteins in plant stress responses. Plant Signal Behav (2011) 1.08
Polypyrimidine tract-binding protein homologues from Arabidopsis underlie regulatory circuits based on alternative splicing and downstream control. Plant J (2010) 1.06
RNA-based regulation in the plant circadian clock. Trends Plant Sci (2011) 1.05
Predicting the impact of alternative splicing on plant MADS domain protein function. PLoS One (2012) 1.05
Induction of vacuolar invertase inhibitor mRNA in potato tubers contributes to cold-induced sweetening resistance and includes spliced hybrid mRNA variants. J Exp Bot (2011) 1.05
Nonsense-mediated mRNA decay (NMD) silences the accumulation of aberrant trypsin proteinase inhibitor mRNA in Nicotiana attenuata. Plant J (2007) 1.04
Plant SR proteins and their functions. Curr Top Microbiol Immunol (2008) 1.04
Competitive inhibition of transcription factors by small interfering peptides. Trends Plant Sci (2011) 1.03
Regulation of alternative splicing of pre-mRNAs by stresses. Curr Top Microbiol Immunol (2008) 1.01
Extensive changes to alternative splicing patterns following allopolyploidy in natural and resynthesized polyploids. Proc Natl Acad Sci U S A (2011) 0.99
Changes in conformational dynamics of mRNA upon AtGRP7 binding studied by fluorescence correlation spectroscopy. J Am Chem Soc (2008) 0.97
Plant Gene and Alternatively Spliced Variant Annotator. A plant genome annotation pipeline for rice gene and alternatively spliced variant identification with cross-species expressed sequence tag conservation from seven plant species. Plant Physiol (2007) 0.97
Single amino acid change alters the ability to specify male or female organ identity. Proc Natl Acad Sci U S A (2010) 0.95
Regulation of protein function by 'microProteins'. EMBO Rep (2010) 0.94
Comparative analysis of serine/arginine-rich proteins across 27 eukaryotes: insights into sub-family classification and extent of alternative splicing. PLoS One (2011) 0.92
A physical, genetic and functional sequence assembly of the barley genome. Nature (2012) 7.25
Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs. RNA (2009) 3.87
Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis. Genome Res (2012) 3.10
Alternative splicing at the intersection of biological timing, development, and stress responses. Plant Cell (2013) 2.63
Complexity of the alternative splicing landscape in plants. Plant Cell (2013) 2.62
Strategies for RNA folding and assembly. Nat Rev Mol Cell Biol (2004) 2.59
Genome analysis: RNA recognition motif (RRM) and K homology (KH) domain RNA-binding proteins from the flowering plant Arabidopsis thaliana. Nucleic Acids Res (2002) 2.44
Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis. Nucleic Acids Res (2011) 2.26
Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Mol Biol Cell (2004) 2.02
A methyl transferase links the circadian clock to the regulation of alternative splicing. Nature (2010) 1.88
Alternative splicing mediates responses of the Arabidopsis circadian clock to temperature changes. Plant Cell (2012) 1.74
Evolutionary conservation and regulation of particular alternative splicing events in plant SR proteins. Nucleic Acids Res (2006) 1.47
Monitoring changes in alternative precursor messenger RNA splicing in multiple gene transcripts. Plant J (2007) 1.45
Plant nuclear bodies. Curr Opin Plant Biol (2004) 1.41
Ectopic expression of atRSZ33 reveals its function in splicing and causes pleiotropic changes in development. Mol Biol Cell (2003) 1.37
A chloroplast retrograde signal regulates nuclear alternative splicing. Science (2014) 1.36
Aberrant mRNA transcripts and the nonsense-mediated decay proteins UPF2 and UPF3 are enriched in the Arabidopsis nucleolus. Plant Cell (2009) 1.35
Phosphoproteomics reveals extensive in vivo phosphorylation of Arabidopsis proteins involved in RNA metabolism. Nucleic Acids Res (2006) 1.34
Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis. J Proteome Res (2008) 1.34
Mononucleotide derivatives as ribosomal P-site substrates reveal an important contribution of the 2'-OH to activity. Nucleic Acids Res (2003) 1.31
Network of interactions of a novel plant-specific Arg/Ser-rich protein, atRSZ33, with atSC35-like splicing factors. J Biol Chem (2002) 1.30
Evolutionary conservation of minor U12-type spliceosome between plants and humans. RNA (2005) 1.29
Proto-oncoprotein TLS/FUS is associated to the nuclear matrix and complexed with splicing factors PTB, SRm160, and SR proteins. Exp Cell Res (2003) 1.27
Cajal bodies and the nucleolus are required for a plant virus systemic infection. EMBO J (2007) 1.25
Use of fluorescent protein tags to study nuclear organization of the spliceosomal machinery in transiently transformed living plant cells. Mol Biol Cell (2004) 1.23
Involvement of the nuclear cap-binding protein complex in alternative splicing in Arabidopsis thaliana. Nucleic Acids Res (2009) 1.19
Interaction of a plant virus-encoded protein with the major nucleolar protein fibrillarin is required for systemic virus infection. Proc Natl Acad Sci U S A (2007) 1.17
Mutation of Arabidopsis spliceosomal timekeeper locus1 causes circadian clock defects. Plant Cell (2012) 1.17
Interactions of Arabidopsis RS domain containing cyclophilins with SR proteins and U1 and U11 small nuclear ribonucleoprotein-specific proteins suggest their involvement in pre-mRNA Splicing. J Biol Chem (2004) 1.14
Localization and dynamics of nuclear speckles in plants. Plant Physiol (2011) 1.09
Introns of plant pri-miRNAs enhance miRNA biogenesis. EMBO Rep (2013) 1.07
Implementing a rational and consistent nomenclature for serine/arginine-rich protein splicing factors (SR proteins) in plants. Plant Cell (2010) 1.07
Imaging of endogenous messenger RNA splice variants in living cells reveals nuclear retention of transcripts inaccessible to nonsense-mediated decay in Arabidopsis. Plant Cell (2014) 1.03
An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana. Nucleic Acids Res (2012) 1.00
Cloning and characterization of two subunits of Arabidopsis thaliana nuclear cap-binding complex. Gene (2002) 0.93
Regulation of plant gene expression by alternative splicing. Biochem Soc Trans (2010) 0.92
Small changes in ambient temperature affect alternative splicing in Arabidopsis thaliana. Plant Signal Behav (2013) 0.92
A plant virus movement protein forms ringlike complexes with the major nucleolar protein, fibrillarin, in vitro. J Mol Biol (2007) 0.91
Mapping of the second tetracycline binding site on the ribosomal small subunit of E.coli. Nucleic Acids Res (2004) 0.90
Determinants of plant U12-dependent intron splicing efficiency. Plant Cell (2004) 0.89
Co-localisation studies of Arabidopsis SR splicing factors reveal different types of speckles in plant cell nuclei. Exp Cell Res (2008) 0.89
Role of Cajal bodies and nucleolus in the maturation of the U1 snRNP in Arabidopsis. PLoS One (2008) 0.86
Plant U13 orthologues and orphan snoRNAs identified by RNomics of RNA from Arabidopsis nucleoli. Nucleic Acids Res (2010) 0.86
Dual functionality of a plant U-rich intronic sequence element. Plant J (2004) 0.86
Compartmentalization of the splicing machinery in plant cell nuclei. Trends Plant Sci (2004) 0.86
The SERRATE protein is involved in alternative splicing in Arabidopsis thaliana. Nucleic Acids Res (2013) 0.85
Identification of RNA targets for the nuclear multidomain cyclophilin atCyp59 and their effect on PPIase activity. Nucleic Acids Res (2012) 0.85
Editorial on alternative splicing and disease. RNA Biol (2010) 0.85
Mutational analysis of a plant branchpoint and polypyrimidine tract required for constitutive splicing of a mini-exon. RNA (2002) 0.84
Alternative splicing in plants. Biochem Soc Trans (2008) 0.84
Evolutionary relationships among barley and Arabidopsis core circadian clock and clock-associated genes. J Mol Evol (2015) 0.83
Thermoplasticity in the plant circadian clock: how plants tell the time-perature. Plant Signal Behav (2012) 0.83
Plant SILAC: stable-isotope labelling with amino acids of arabidopsis seedlings for quantitative proteomics. PLoS One (2013) 0.83
Localization of eIF4A-III in the nucleolus and splicing speckles is an indicator of plant stress. Plant Signal Behav (2009) 0.82
Rct1, a nuclear RNA recognition motif-containing cyclophilin, regulates phosphorylation of the RNA polymerase II C-terminal domain. Mol Cell Biol (2007) 0.81
Arabidopsis PTB1 and PTB2 proteins negatively regulate splicing of a mini-exon splicing reporter and affect alternative splicing of endogenous genes differentially. New Phytol (2014) 0.79
Let there be light: regulation of gene expression in plants. RNA Biol (2014) 0.77
Activity of 3'-thioAMP derivatives as ribosomal P-site substrates. Nucleic Acids Res (2005) 0.77
Alternative splicing of mini-exons in the Arabidopsis leaf rust receptor-like kinase LRK10 genes affects subcellular localisation. Plant Cell Rep (2014) 0.76
Shedding light on the chloroplast as a remote control of nuclear gene expression. Plant Signal Behav (2014) 0.75