Published in IEEE/ACM Trans Comput Biol Bioinform on February 05, 2007
Separating significant matches from spurious matches in DNA sequences. J Comput Biol (2011) 0.88
Whole-genome shotgun assembly and comparison of human genome assemblies. Proc Natl Acad Sci U S A (2004) 6.08
A dynamic programming algorithm for haplotype block partitioning. Proc Natl Acad Sci U S A (2002) 5.12
High-resolution human genome structure by single-molecule analysis. Proc Natl Acad Sci U S A (2010) 2.47
Diploid genome reconstruction of Ciona intestinalis and comparative analysis with Ciona savignyi. Genome Res (2007) 2.37
A single molecule scaffold for the maize genome. PLoS Genet (2009) 2.33
Distributional regimes for the number of k-word matches between two random sequences. Proc Natl Acad Sci U S A (2002) 2.20
Alignment-free sequence comparison (I): statistics and power. J Comput Biol (2009) 2.18
Alignment of optical maps. J Comput Biol (2006) 1.88
HapBlock: haplotype block partitioning and tag SNP selection software using a set of dynamic programming algorithms. Bioinformatics (2004) 1.86
Haplotype block partitioning and tag SNP selection using genotype data and their applications to association studies. Genome Res (2004) 1.74
An algorithm for assembly of ordered restriction maps from single DNA molecules. Proc Natl Acad Sci U S A (2006) 1.63
Systematic discovery of functional modules and context-specific functional annotation of human genome. Bioinformatics (2007) 1.61
A graph-based approach to systematically reconstruct human transcriptional regulatory modules. Bioinformatics (2007) 1.59
Alignment-free sequence comparison (II): theoretical power of comparison statistics. J Comput Biol (2010) 1.52
Estimating the repeat structure and length of DNA sequences using L-tuples. Genome Res (2003) 1.41
An Eulerian path approach to local multiple alignment for DNA sequences. Proc Natl Acad Sci U S A (2005) 1.21
Haplotype reconstruction from SNP alignment. J Comput Biol (2004) 1.20
Refinement of optical map assemblies. Bioinformatics (2006) 1.17
Gene Aging Nexus: a web database and data mining platform for microarray data on aging. Nucleic Acids Res (2006) 1.14
Integrative analysis of many weighted co-expression networks using tensor computation. PLoS Comput Biol (2011) 1.12
New Generations: Sequencing Machines and Their Computational Challenges. J Comput Sci Technol (2010) 1.12
New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing. Brief Bioinform (2013) 1.07
New powerful statistics for alignment-free sequence comparison under a pattern transfer model. J Theor Biol (2011) 1.05
An Eulerian path approach to global multiple alignment for DNA sequences. J Comput Biol (2003) 0.98
Integrative missing value estimation for microarray data. BMC Bioinformatics (2006) 0.97
The power of detecting enriched patterns: an HMM approach. J Comput Biol (2010) 0.97
Haplotype block partition with limited resources and applications to human chromosome 21 haplotype data. Am J Hum Genet (2003) 0.96
An integrative network approach to map the transcriptome to the phenome. J Comput Biol (2009) 0.95
Accuracy assessment of diploid consensus sequences. IEEE/ACM Trans Comput Biol Bioinform (2007) 0.88
An integrative modular approach to systematically predict gene-phenotype associations. BMC Bioinformatics (2010) 0.85
Sequence alignment as hypothesis testing. J Comput Biol (2011) 0.83
A geometric interpretation for local alignment-free sequence comparison. J Comput Biol (2013) 0.83
HAPLOWSER: a whole-genome haplotype browser for personal genome and metagenome. Bioinformatics (2009) 0.79
A quantile method for sizing optical maps. J Comput Biol (2007) 0.78
Normal and compound poisson approximations for pattern occurrences in NGS reads. J Comput Biol (2012) 0.76
The Seventh Asia Pacific Bioinformatics Conference (APBC2009). BMC Bioinformatics (2009) 0.75