Published in Genome Res on April 12, 2004
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An integrated network of androgen receptor, polycomb, and TMPRSS2-ERG gene fusions in prostate cancer progression. Cancer Cell (2010) 6.76
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A two-step mechanism for stem cell activation during hair regeneration. Cell Stem Cell (2009) 5.40
A dynamic programming algorithm for haplotype block partitioning. Proc Natl Acad Sci U S A (2002) 5.12
A critical assessment of Mus musculus gene function prediction using integrated genomic evidence. Genome Biol (2008) 4.78
Integrating regulatory motif discovery and genome-wide expression analysis. Proc Natl Acad Sci U S A (2003) 4.74
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Bayesian inference of epistatic interactions in case-control studies. Nat Genet (2007) 4.31
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SAINT: probabilistic scoring of affinity purification-mass spectrometry data. Nat Methods (2010) 3.50
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Haplotype block structure and its applications to association studies: power and study designs. Am J Hum Genet (2002) 2.88
Mapping Gene Ontology to proteins based on protein-protein interaction data. Bioinformatics (2004) 2.63
The sigmaE regulon and the identification of additional sporulation genes in Bacillus subtilis. J Mol Biol (2003) 2.59
Recursive SVM feature selection and sample classification for mass-spectrometry and microarray data. BMC Bioinformatics (2006) 2.53
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Modeling within-motif dependence for transcription factor binding site predictions. Bioinformatics (2004) 2.29
Taq DNA polymerase slippage mutation rates measured by PCR and quasi-likelihood analysis: (CA/GT)n and (A/T)n microsatellites. Nucleic Acids Res (2003) 2.28
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De novo cis-regulatory module elicitation for eukaryotic genomes. Proc Natl Acad Sci U S A (2005) 2.20
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A data-driven clustering method for time course gene expression data. Nucleic Acids Res (2006) 2.20
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Genomic androgen receptor-occupied regions with different functions, defined by histone acetylation, coregulators and transcriptional capacity. PLoS One (2008) 2.18
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HAPLORE: a program for haplotype reconstruction in general pedigrees without recombination. Bioinformatics (2004) 2.16
Local similarity analysis reveals unique associations among marine bacterioplankton species and environmental factors. Bioinformatics (2006) 2.15
Prediction of protein function using protein-protein interaction data. J Comput Biol (2003) 2.15
Phylogenomics of nonavian reptiles and the structure of the ancestral amniote genome. Proc Natl Acad Sci U S A (2007) 2.09
Global gene expression analysis reveals evidence for decreased lipid biosynthesis and increased innate immunity in uninvolved psoriatic skin. J Invest Dermatol (2009) 2.06
The relationship between microsatellite slippage mutation rate and the number of repeat units. Mol Biol Evol (2003) 2.01
Assessment of the reliability of protein-protein interactions and protein function prediction. Pac Symp Biocomput (2003) 1.89
Alignment of optical maps. J Comput Biol (2006) 1.88
HapBlock: haplotype block partitioning and tag SNP selection software using a set of dynamic programming algorithms. Bioinformatics (2004) 1.86
Periodically Aligned Si Nanopillar Arrays as Efficient Antireflection Layers for Solar Cell Applications. Nanoscale Res Lett (2010) 1.85
Clustering 16S rRNA for OTU prediction: a method of unsupervised Bayesian clustering. Bioinformatics (2011) 1.82
An integrative approach for causal gene identification and gene regulatory pathway inference. Bioinformatics (2006) 1.82
HiCNorm: removing biases in Hi-C data via Poisson regression. Bioinformatics (2012) 1.77
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Decoding human regulatory circuits. Genome Res (2004) 1.70
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Further understanding human disease genes by comparing with housekeeping genes and other genes. BMC Genomics (2006) 1.68
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Maternal influence on blood pressure suggests involvement of mitochondrial DNA in the pathogenesis of hypertension: the Framingham Heart Study. J Hypertens (2007) 1.67
An animal model of MERS produced by infection of rhesus macaques with MERS coronavirus. J Infect Dis (2013) 1.67
An integrated probabilistic model for functional prediction of proteins. J Comput Biol (2004) 1.67
On the detection and refinement of transcription factor binding sites using ChIP-Seq data. Nucleic Acids Res (2010) 1.67
Bayesian inference of spatial organizations of chromosomes. PLoS Comput Biol (2013) 1.66
A Bayesian partition method for detecting pleiotropic and epistatic eQTL modules. PLoS Comput Biol (2010) 1.66
Incorporating genotyping uncertainty in haplotype inference for single-nucleotide polymorphisms. Am J Hum Genet (2004) 1.66
Statistical resynchronization and Bayesian detection of periodically expressed genes. Nucleic Acids Res (2004) 1.64
An algorithm for assembly of ordered restriction maps from single DNA molecules. Proc Natl Acad Sci U S A (2006) 1.63
Diffusion kernel-based logistic regression models for protein function prediction. OMICS (2006) 1.63
Deep sequencing reveals distinct patterns of DNA methylation in prostate cancer. Genome Res (2011) 1.63
Accurate genome relative abundance estimation based on shotgun metagenomic reads. PLoS One (2011) 1.62
Molecular docking and three-dimensional quantitative structure-activity relationship studies on the binding modes of herbicidal 1-(substituted phenoxyacetoxy)alkylphosphonates to the E1 component of pyruvate dehydrogenase. J Agric Food Chem (2007) 1.61
Systematic discovery of functional modules and context-specific functional annotation of human genome. Bioinformatics (2007) 1.61
A graph-based approach to systematically reconstruct human transcriptional regulatory modules. Bioinformatics (2007) 1.59
Clustering analysis of SAGE data using a Poisson approach. Genome Biol (2004) 1.58
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BioOptimizer: a Bayesian scoring function approach to motif discovery. Bioinformatics (2004) 1.55
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CGI: a new approach for prioritizing genes by combining gene expression and protein-protein interaction data. Bioinformatics (2006) 1.55
A boosting approach for motif modeling using ChIP-chip data. Bioinformatics (2005) 1.53
Alignment-free sequence comparison (II): theoretical power of comparison statistics. J Comput Biol (2010) 1.52
An integrated approach to the prediction of domain-domain interactions. BMC Bioinformatics (2006) 1.52