Published in Bioinformatics on June 27, 2009
HapEdit: an accuracy assessment viewer for haplotype assembly using massively parallel DNA-sequencing technologies. Nucleic Acids Res (2011) 0.75
Proceedings of the 2010 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) conference. BMC Bioinformatics (2010) 0.75
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res (1997) 665.31
BLAT--the BLAST-like alignment tool. Genome Res (2002) 126.78
The complete genome of an individual by massively parallel DNA sequencing. Nature (2008) 52.81
Versatile and open software for comparing large genomes. Genome Biol (2004) 49.45
The diploid genome sequence of an Asian individual. Nature (2008) 46.29
The diploid genome sequence of an individual human. PLoS Biol (2007) 44.80
The UCSC Genome Browser Database: 2008 update. Nucleic Acids Res (2007) 23.13
VISTA: computational tools for comparative genomics. Nucleic Acids Res (2004) 13.52
AVID: A global alignment program. Genome Res (2003) 10.06
The personal genome project. Mol Syst Biol (2005) 5.47
Assembly of polymorphic genomes: algorithms and application to Ciona savignyi. Genome Res (2005) 2.69
Combo: a whole genome comparative browser. Bioinformatics (2006) 2.52
Diploid genome reconstruction of Ciona intestinalis and comparative analysis with Ciona savignyi. Genome Res (2007) 2.37
Informativeness of genetic markers for inference of ancestry. Am J Hum Genet (2003) 6.90
Whole-genome shotgun assembly and comparison of human genome assemblies. Proc Natl Acad Sci U S A (2004) 6.08
A dynamic programming algorithm for haplotype block partitioning. Proc Natl Acad Sci U S A (2002) 5.12
Nationwide cancer incidence in Korea, 2003-2005. Cancer Res Treat (2009) 5.01
Energetics of glycerol conduction through aquaglyceroporin GlpF. Proc Natl Acad Sci U S A (2002) 3.60
Adjust quality scores from alignment and improve sequencing accuracy. Nucleic Acids Res (2004) 2.76
High-resolution human genome structure by single-molecule analysis. Proc Natl Acad Sci U S A (2010) 2.47
Diploid genome reconstruction of Ciona intestinalis and comparative analysis with Ciona savignyi. Genome Res (2007) 2.37
A single molecule scaffold for the maize genome. PLoS Genet (2009) 2.33
Distributional regimes for the number of k-word matches between two random sequences. Proc Natl Acad Sci U S A (2002) 2.20
Tor1/Sch9-regulated carbon source substitution is as effective as calorie restriction in life span extension. PLoS Genet (2009) 2.18
Alignment-free sequence comparison (I): statistics and power. J Comput Biol (2009) 2.18
Alignment of optical maps. J Comput Biol (2006) 1.88
HapBlock: haplotype block partitioning and tag SNP selection software using a set of dynamic programming algorithms. Bioinformatics (2004) 1.86
Haplotype block partitioning and tag SNP selection using genotype data and their applications to association studies. Genome Res (2004) 1.74
Inferring microRNA activities by combining gene expression with microRNA target prediction. PLoS One (2008) 1.71
Force field bias in protein folding simulations. Biophys J (2009) 1.67
A rapid coarse residue-based computational method for x-ray solution scattering characterization of protein folds and multiple conformational states of large protein complexes. Biophys J (2009) 1.63
An algorithm for assembly of ordered restriction maps from single DNA molecules. Proc Natl Acad Sci U S A (2006) 1.63
Systematic discovery of functional modules and context-specific functional annotation of human genome. Bioinformatics (2007) 1.61
A graph-based approach to systematically reconstruct human transcriptional regulatory modules. Bioinformatics (2007) 1.59
Alignment-free sequence comparison (II): theoretical power of comparison statistics. J Comput Biol (2010) 1.52
Study on a model of street vended food choices by Korean high school students. Nutr Res Pract (2011) 1.47
Estimating the repeat structure and length of DNA sequences using L-tuples. Genome Res (2003) 1.41
Parallelized-over-parts computation of absolute binding free energy with docking and molecular dynamics. J Chem Phys (2006) 1.27
Foldamer dynamics expressed via Markov state models. I. Explicit solvent molecular-dynamics simulations in acetonitrile, chloroform, methanol, and water. J Chem Phys (2005) 1.23
An Eulerian path approach to local multiple alignment for DNA sequences. Proc Natl Acad Sci U S A (2005) 1.21
Haplotype reconstruction from SNP alignment. J Comput Biol (2004) 1.20
Refinement of optical map assemblies. Bioinformatics (2006) 1.17
Gene Aging Nexus: a web database and data mining platform for microarray data on aging. Nucleic Acids Res (2006) 1.14
Integrative analysis of many weighted co-expression networks using tensor computation. PLoS Comput Biol (2011) 1.12
New Generations: Sequencing Machines and Their Computational Challenges. J Comput Sci Technol (2010) 1.12
SoftWAXS: a computational tool for modeling wide-angle X-ray solution scattering from biomolecules. J Appl Crystallogr (2009) 1.11
Inference of transcription modification in long-live yeast strains from their expression profiles. BMC Genomics (2007) 1.09
New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing. Brief Bioinform (2013) 1.07
New powerful statistics for alignment-free sequence comparison under a pattern transfer model. J Theor Biol (2011) 1.05
Persistent voids: a new structural metric for membrane fusion. Bioinformatics (2007) 1.05
Foldamer dynamics expressed via Markov state models. II. State space decomposition. J Chem Phys (2005) 1.03
Integrative gene network construction for predicting a set of complementary prostate cancer genes. Bioinformatics (2011) 1.01
Inferring activity changes of transcription factors by binding association with sorted expression profiles. BMC Bioinformatics (2007) 1.01
Systematic identification of cell cycle regulated transcription factors from microarray time series data. BMC Genomics (2008) 0.98
Sub-array normalization subject to differentiation. Nucleic Acids Res (2005) 0.98
Significant and systematic expression differentiation in long-lived yeast strains. PLoS One (2007) 0.98
An Eulerian path approach to global multiple alignment for DNA sequences. J Comput Biol (2003) 0.98
Integrative missing value estimation for microarray data. BMC Bioinformatics (2006) 0.97
The power of detecting enriched patterns: an HMM approach. J Comput Biol (2010) 0.97
Haplotype block partition with limited resources and applications to human chromosome 21 haplotype data. Am J Hum Genet (2003) 0.96
An integrative network approach to map the transcriptome to the phenome. J Comput Biol (2009) 0.95
X-ray solution scattering studies of the structural diversity intrinsic to protein ensembles. Biopolymers (2011) 0.92
A model-based approach to selection of tag SNPs. BMC Bioinformatics (2006) 0.92
Excitation migration in trimeric cyanobacterial photosystem I. J Chem Phys (2004) 0.90
Accuracy assessment of diploid consensus sequences. IEEE/ACM Trans Comput Biol Bioinform (2007) 0.88
A probe-treatment-reference (PTR) model for the analysis of oligonucleotide expression microarrays. BMC Bioinformatics (2008) 0.86
Theory for an order-driven disruption of the liquid state in water. J Chem Phys (2008) 0.86
An integrative modular approach to systematically predict gene-phenotype associations. BMC Bioinformatics (2010) 0.85
Comparative analyses of time-course gene expression profiles of the long-lived sch9Delta mutant. Nucleic Acids Res (2009) 0.84
Sequence alignment as hypothesis testing. J Comput Biol (2011) 0.83
A geometric interpretation for local alignment-free sequence comparison. J Comput Biol (2013) 0.83
MARD: a new method to detect differential gene expression in treatment-control time courses. Bioinformatics (2006) 0.82
Systematic identification of transcription factors associated with patient survival in cancers. BMC Genomics (2009) 0.81
Calcium-dependent activator protein for secretion 1 (CAPS1) binds to syntaxin-1 in a distinct mode from Munc13-1. J Biol Chem (2013) 0.81
The FDA-approved drug irbesartan inhibits HBV-infection in HepG2 cells stably expressing sodium taurocholate co-transporting polypeptide. Antivir Ther (2015) 0.80
A quantile method for sizing optical maps. J Comput Biol (2007) 0.78
On the length of the longest exact position match in a random sequence. IEEE/ACM Trans Comput Biol Bioinform (2007) 0.78
A multicenter prospective study in type IV bone of a single type of implant. Implant Dent (2012) 0.77
Impact of TGF-b on breast cancer from a quantitative proteomic analysis. Comput Biol Med (2013) 0.76
SEME: a fast mapper of Illumina sequencing reads with statistical evaluation. J Comput Biol (2013) 0.76
Identification of functional CNV region networks using a CNV-gene mapping algorithm in a genome-wide scale. Bioinformatics (2012) 0.76
Normal and compound poisson approximations for pattern occurrences in NGS reads. J Comput Biol (2012) 0.76
TC-VGC: a tumor classification system using variations in genes' correlation. Comput Methods Programs Biomed (2011) 0.76
HapEdit: an accuracy assessment viewer for haplotype assembly using massively parallel DNA-sequencing technologies. Nucleic Acids Res (2011) 0.75
A multi-sample based method for identifying common CNVs in normal human genomic structure using high-resolution aCGH data. PLoS One (2011) 0.75
Improved method for protein complex detection using bottleneck proteins. BMC Med Inform Decis Mak (2013) 0.75
Improving the electrical properties of lanthanum silicate films on ge metal oxide semiconductor capacitors by adopting interfacial barrier and capping layers. ACS Appl Mater Interfaces (2014) 0.75
CNV detection method optimized for high-resolution arrayCGH by normality test. Comput Biol Med (2012) 0.75
ICP: A novel approach to predict prognosis of prostate cancer with inner-class clustering of gene expression data. Comput Biol Med (2013) 0.75
Protein localization vector propagation: a method for improving the accuracy of drug repositioning. Mol Biosyst (2015) 0.75
The Seventh Asia Pacific Bioinformatics Conference (APBC2009). BMC Bioinformatics (2009) 0.75
GSEH: A novel approach to select prostate cancer-associated genes using gene expression heterogeneity. IEEE/ACM Trans Comput Biol Bioinform (2016) 0.75
Shape-based retrieval of CNV regions in read coverage data. Int J Data Min Bioinform (2014) 0.75