Noncoding RNAs and intranuclear positioning in monoallelic gene expression.

PubWeight™: 1.71‹?› | Rank: Top 3%

🔗 View Article (PMID 17320513)

Published in Cell on February 23, 2007

Authors

Pok Kwan Yang1, Mitzi I Kuroda

Author Affiliations

1: Howard Hughes Medical Institute, Boston, Massachusetts 02115, USA.

Articles citing this

Long noncoding RNAs with enhancer-like function in human cells. Cell (2010) 13.00

The genetic signatures of noncoding RNAs. PLoS Genet (2009) 6.72

The functional role of long non-coding RNA in human carcinomas. Mol Cancer (2011) 6.37

Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes. Cell (2008) 5.78

A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression. EMBO J (2010) 3.18

Association between active genes occurs at nuclear speckles and is modulated by chromatin environment. J Cell Biol (2008) 3.13

Rational design of ligands targeting triplet repeating transcripts that cause RNA dominant disease: application to myotonic muscular dystrophy type 1 and spinocerebellar ataxia type 3. J Am Chem Soc (2009) 2.06

A genomic analysis of RNA polymerase II modification and chromatin architecture related to 3' end RNA polyadenylation. Genome Res (2008) 2.01

RNA-mediated epigenetic regulation of gene expression. Nat Rev Genet (2015) 1.90

siRNA-mediated heterochromatin establishment requires HP1 and is associated with antisense transcription. Mol Cell (2008) 1.74

Allele-specific nuclear positioning of the monoallelically expressed astrocyte marker GFAP. Genes Dev (2008) 1.62

Two distinct mechanisms of silencing by the KvDMR1 imprinting control region. EMBO J (2007) 1.59

Epigenetic principles and mechanisms underlying nervous system functions in health and disease. Prog Neurobiol (2008) 1.53

Chromatin associated sense and antisense noncoding RNAs are transcribed from the var gene family of virulence genes of the malaria parasite Plasmodium falciparum. RNA (2008) 1.38

Kcnq1ot1/Lit1 noncoding RNA mediates transcriptional silencing by targeting to the perinucleolar region. Mol Cell Biol (2008) 1.31

Antisense transcripts from immunoglobulin heavy-chain locus V(D)J and switch regions. Proc Natl Acad Sci U S A (2008) 1.20

Epigenetic marking of the BDNF gene by early-life adverse experiences. Horm Behav (2010) 1.18

Epigenetic mechanisms in schizophrenia. Biochim Biophys Acta (2009) 1.17

Promoter architecture of mouse olfactory receptor genes. Genome Res (2011) 1.06

Identification of novel markers of mouse fetal ovary development. PLoS One (2012) 1.03

Strand selective generation of endo-siRNAs from the Na/phosphate transporter gene Slc34a1 in murine tissues. Nucleic Acids Res (2009) 1.02

Ectopic recombination of a malaria var gene during mitosis associated with an altered var switch rate. J Mol Biol (2009) 0.98

Development in the STORM. Dev Cell (2012) 0.96

Transcription through enhancers suppresses their activity in Drosophila. Epigenetics Chromatin (2013) 0.89

Aberrant allele-specific replication, independent of parental origin, in blood cells of cancer patients. BMC Cancer (2008) 0.89

Spatial allelic imbalance of BCL2 genes and chromosome 18 territories in nonneoplastic and neoplastic cervical squamous epithelium. Eur Biophys J (2009) 0.86

Transcriptional provirus silencing as a crosstalk of de novo DNA methylation and epigenomic features at the integration site. Nucleic Acids Res (2012) 0.85

The aberrant asynchronous replication - characterizing lymphocytes of cancer patients - is erased following stem cell transplantation. BMC Cancer (2010) 0.81

Dysregulated A to I RNA editing and non-coding RNAs in neurodegeneration. Front Genet (2013) 0.80

Emerging molecular targets for brain repair after stroke. Stroke Res Treat (2013) 0.78

Using semantic web technologies to annotate and align microarray designs. Cancer Inform (2009) 0.78

Histone acetylation and its role in embryonic stem cell differentiation. World J Stem Cells (2010) 0.78

Insertion of an imprinted insulator into the IgH locus reveals developmentally regulated, transcription-dependent control of V(D)J recombination. Mol Cell Biol (2014) 0.78

Setting limits: maintaining order in a large gene family. Transcription (2014) 0.77

Polycomb group gene expression in the sea urchin. Dev Dyn (2008) 0.77

Epigenomics: Pioneering a New Frontier in Cancer Research. J Pharmacogenomics Pharmacoproteomics (2012) 0.77

Alterations of Epigenetic Regulators in Pancreatic Cancer and Their Clinical Implications. Int J Mol Sci (2016) 0.75

Identification and characterization of OSTL (RNF217) encoding a RING-IBR-RING protein adjacent to a translocation breakpoint involving ETV6 in childhood ALL. Sci Rep (2014) 0.75

Expressed alleles of imprinted IGF2, DLK1 and MEG3 colocalize in 3D-preserved nuclei of porcine fetal cells. BMC Cell Biol (2016) 0.75

Trans-acting GC-rich non-coding RNA at var expression site modulates gene counting in malaria parasite. Nucleic Acids Res (2016) 0.75

Articles by these authors

Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science (2010) 12.39

Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature (2010) 6.87

An assessment of histone-modification antibody quality. Nat Struct Mol Biol (2010) 3.72

High-resolution ChIP-chip analysis reveals that the Drosophila MSL complex selectively identifies active genes on the male X chromosome. Genes Dev (2006) 3.30

A sequence motif within chromatin entry sites directs MSL establishment on the Drosophila X chromosome. Cell (2008) 3.10

MSL complex is attracted to genes marked by H3K36 trimethylation using a sequence-independent mechanism. Mol Cell (2007) 2.87

Drosophila dosage compensation: a complex voyage to the X chromosome. Development (2009) 2.87

Global regulation of X chromosomal genes by the MSL complex in Drosophila melanogaster. Genes Dev (2005) 2.46

X chromosome dosage compensation via enhanced transcriptional elongation in Drosophila. Nature (2011) 2.44

The genomic binding sites of a noncoding RNA. Proc Natl Acad Sci U S A (2011) 2.34

Normalization and experimental design for ChIP-chip data. BMC Bioinformatics (2007) 2.08

Extent of chromatin spreading determined by roX RNA recruitment of MSL proteins. Science (2002) 2.05

Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin. Genome Res (2010) 1.87

Local spreading of MSL complexes from roX genes on the Drosophila X chromosome. Genes Dev (2003) 1.83

Nature and function of insulator protein binding sites in the Drosophila genome. Genome Res (2012) 1.77

Sequence-specific targeting of Drosophila roX genes by the MSL dosage compensation complex. Mol Cell (2003) 1.66

Drosophila MSL complex globally acetylates H4K16 on the male X chromosome for dosage compensation. Nat Struct Mol Biol (2009) 1.63

Multiple classes of MSL binding sites target dosage compensation to the X chromosome of Drosophila. Curr Biol (2004) 1.57

The MSL3 chromodomain directs a key targeting step for dosage compensation of the Drosophila melanogaster X chromosome. Nat Struct Mol Biol (2008) 1.55

The MSL complex levels are critical for its correct targeting to the chromosomes in Drosophila melanogaster. Chromosoma (2003) 1.53

Sequence-specific targeting of MSL complex regulates transcription of the roX RNA genes. EMBO J (2004) 1.44

Chromatin proteins captured by ChIP-mass spectrometry are linked to dosage compensation in Drosophila. Nat Struct Mol Biol (2013) 1.26

Functional redundancy within roX1, a noncoding RNA involved in dosage compensation in Drosophila melanogaster. Genetics (2003) 1.24

Sex and the single chromosome. Adv Genet (2002) 1.22

The Drosophila roX1 RNA gene can overcome silent chromatin by recruiting the male-specific lethal dosage compensation complex. Genetics (2003) 1.20

Conservation and de novo acquisition of dosage compensation on newly evolved sex chromosomes in Drosophila. Genes Dev (2013) 1.13

Long-range spreading of dosage compensation in Drosophila captures transcribed autosomal genes inserted on X. Genes Dev (2009) 1.13

Sequence-specific targeting of dosage compensation in Drosophila favors an active chromatin context. PLoS Genet (2012) 1.04

Regulation of histone H4 Lys16 acetylation by predicted alternative secondary structures in roX noncoding RNAs. Mol Cell Biol (2008) 1.04

Reciprocal interactions of human C10orf12 and C17orf96 with PRC2 revealed by BioTAP-XL cross-linking and affinity purification. Proc Natl Acad Sci U S A (2014) 1.01

Enrichment of HP1a on Drosophila chromosome 4 genes creates an alternate chromatin structure critical for regulation in this heterochromatic domain. PLoS Genet (2012) 0.97

Are we there yet? Initial targeting of the Male-Specific Lethal and Polycomb group chromatin complexes in Drosophila. Open Biol (2014) 0.96

Identification of chromatin-associated regulators of MSL complex targeting in Drosophila dosage compensation. PLoS Genet (2012) 0.94

Variable splicing of non-coding roX2 RNAs influences targeting of MSL dosage compensation complexes in Drosophila. RNA Biol (2005) 0.92

Evidence of activity-specific, radial organization of mitotic chromosomes in Drosophila. PLoS Biol (2011) 0.91

A genome-wide screen identifies genes that affect somatic homolog pairing in Drosophila. G3 (Bethesda) (2012) 0.89

"Jump start and gain" model for dosage compensation in Drosophila based on direct sequencing of nascent transcripts. Cell Rep (2013) 0.89

BioTAP-XL: Cross-linking/Tandem Affinity Purification to Study DNA Targets, RNA, and Protein Components of Chromatin-Associated Complexes. Curr Protoc Mol Biol (2015) 0.82

Molecular biology. Filling gaps in genome organization. Science (2004) 0.78

Quantized correlation coefficient for measuring reproducibility of ChIP-chip data. BMC Bioinformatics (2010) 0.77