Published in Proc Natl Acad Sci U S A on March 16, 2007
Small RNAs and their roles in plant development. Annu Rev Cell Dev Biol (2009) 4.32
Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2008) 2.74
Biogenesis, turnover, and mode of action of plant microRNAs. Plant Cell (2013) 2.65
Identification of nuclear dicing bodies containing proteins for microRNA biogenesis in living Arabidopsis plants. Curr Biol (2007) 2.49
The RNA-binding proteins HYL1 and SE promote accurate in vitro processing of pri-miRNA by DCL1. Proc Natl Acad Sci U S A (2008) 2.40
Nuclear bodies: random aggregates of sticky proteins or crucibles of macromolecular assembly? Dev Cell (2009) 2.29
Vive la différence: biogenesis and evolution of microRNAs in plants and animals. Genome Biol (2011) 2.21
Roles of RNA polymerase IV in gene silencing. Trends Plant Sci (2008) 2.00
The FHA domain proteins DAWDLE in Arabidopsis and SNIP1 in humans act in small RNA biogenesis. Proc Natl Acad Sci U S A (2008) 1.99
Primary microRNA transcript retention at sites of transcription leads to enhanced microRNA production. J Cell Biol (2008) 1.98
Genome-wide double-stranded RNA sequencing reveals the functional significance of base-paired RNAs in Arabidopsis. PLoS Genet (2010) 1.56
Small RNA metabolism in Arabidopsis. Trends Plant Sci (2008) 1.56
siRNA and miRNA processing: new functions for Cajal bodies. Curr Opin Genet Dev (2008) 1.42
The Arabidopsis thaliana double-stranded RNA binding protein DRB1 directs guide strand selection from microRNA duplexes. RNA (2009) 1.42
Structure of Arabidopsis HYPONASTIC LEAVES1 and its molecular implications for miRNA processing. Structure (2010) 1.41
Gene structures and processing of Arabidopsis thaliana HYL1-dependent pri-miRNAs. Nucleic Acids Res (2009) 1.36
Aberrant mRNA transcripts and the nonsense-mediated decay proteins UPF2 and UPF3 are enriched in the Arabidopsis nucleolus. Plant Cell (2009) 1.35
Two cap-binding proteins CBP20 and CBP80 are involved in processing primary MicroRNAs. Plant Cell Physiol (2008) 1.35
Deep sequencing of small RNAs specifically associated with Arabidopsis AGO1 and AGO4 uncovers new AGO functions. Plant J (2011) 1.33
Dynamic regulation of ARGONAUTE4 within multiple nuclear bodies in Arabidopsis thaliana. PLoS Genet (2008) 1.30
Regulation of miRNA abundance by RNA binding protein TOUGH in Arabidopsis. Proc Natl Acad Sci U S A (2012) 1.27
Small RNAs - secrets and surprises of the genome. Plant J (2010) 1.20
miRNA and piRNA localization in the male mammalian meiotic nucleus. Chromosome Res (2008) 1.19
Chromatin: linking structure and function in the nucleolus. Chromosoma (2008) 1.14
Genome-wide identification of miRNAs responsive to drought in peach (Prunus persica) by high-throughput deep sequencing. PLoS One (2012) 1.10
Arabidopsis proline-rich protein important for development and abiotic stress tolerance is involved in microRNA biogenesis. Proc Natl Acad Sci U S A (2012) 1.10
MicroRNA and tasiRNA diversity in mature pollen of Arabidopsis thaliana. BMC Genomics (2009) 1.10
Expression of microRNAs and its regulation in plants. Semin Cell Dev Biol (2010) 1.03
NOT2 proteins promote polymerase II-dependent transcription and interact with multiple MicroRNA biogenesis factors in Arabidopsis. Plant Cell (2013) 1.02
A role for the RNA-binding protein MOS2 in microRNA maturation in Arabidopsis. Cell Res (2013) 1.02
The helicase and RNaseIIIa domains of Arabidopsis Dicer-Like1 modulate catalytic parameters during microRNA biogenesis. Plant Physiol (2012) 1.02
Subnuclear compartmentalization of transiently expressed polyadenylated pri-microRNAs: processing at transcription sites or accumulation in SC35 foci. Cell Cycle (2009) 1.00
Reconstituting plant miRNA biogenesis. Proc Natl Acad Sci U S A (2008) 1.00
The dicer-like1 homolog fuzzy tassel is required for the regulation of meristem determinacy in the inflorescence and vegetative growth in maize. Plant Cell (2014) 0.97
Evolution of MIR168 paralogs in Brassicaceae. BMC Evol Biol (2009) 0.94
SINE RNA induces severe developmental defects in Arabidopsis thaliana and interacts with HYL1 (DRB1), a key member of the DCL1 complex. PLoS Genet (2008) 0.93
Multiple RNA recognition patterns during microRNA biogenesis in plants. Genome Res (2013) 0.93
MIR846 and MIR842 comprise a cistronic MIRNA pair that is regulated by abscisic acid by alternative splicing in roots of Arabidopsis. Plant Mol Biol (2013) 0.92
The fascinating world of RNA interference. Int J Biol Sci (2009) 0.92
Analysis of miRNA Modifications. Methods Mol Biol (2010) 0.92
HUA ENHANCER1 is involved in posttranscriptional regulation of positive and negative regulators in Arabidopsis photomorphogenesis. Plant Cell (2014) 0.90
CDC5, a DNA binding protein, positively regulates posttranscriptional processing and/or transcription of primary microRNA transcripts. Proc Natl Acad Sci U S A (2013) 0.90
DRB2 is required for microRNA biogenesis in Arabidopsis thaliana. PLoS One (2012) 0.89
An importin β protein negatively regulates MicroRNA activity in Arabidopsis. Plant Cell (2011) 0.89
A dominant mutation in DCL1 suppresses the hyl1 mutant phenotype by promoting the processing of miRNA. RNA (2009) 0.88
HYL1 controls the miR156-mediated juvenile phase of vegetative growth. J Exp Bot (2012) 0.88
Regulation of pri-miRNA processing by the hnRNP-like protein AtGRP7 in Arabidopsis. Nucleic Acids Res (2014) 0.85
Complementation of HYPONASTIC LEAVES1 by double-strand RNA-binding domains of DICER-LIKE1 in nuclear dicing bodies. Plant Physiol (2013) 0.85
Digital gene expression profiling by 5'-end sequencing of cDNAs during reprogramming in the moss Physcomitrella patens. PLoS One (2012) 0.85
Nucleolus-tethering system (NoTS) reveals that assembly of photobodies follows a self-organization model. Mol Biol Cell (2014) 0.85
Computational identification of conserved microRNAs and their putative targets in the Hypericum perforatum L. flower transcriptome. Plant Reprod (2013) 0.85
Intersection of small RNA pathways in Arabidopsis thaliana sub-nuclear domains. PLoS One (2013) 0.84
The crosstalk between plant microRNA biogenesis factors and the spliceosome. Plant Signal Behav (2013) 0.84
RNA silencing induced by an artificial sequence that prevents proper transcription termination in rice. Plant Physiol (2012) 0.83
Identification of Cassava MicroRNAs under Abiotic Stress. Int J Genomics (2013) 0.83
Phytophthora effector targets a novel component of small RNA pathway in plants to promote infection. Proc Natl Acad Sci U S A (2015) 0.83
Dicing bodies. Plant Physiol (2011) 0.82
Functional mapping of the plant small RNA methyltransferase: HEN1 physically interacts with HYL1 and DICER-LIKE 1 proteins. Nucleic Acids Res (2015) 0.81
PRL1, an RNA-binding protein, positively regulates the accumulation of miRNAs and siRNAs in Arabidopsis. PLoS Genet (2014) 0.80
The RNA-binding protein HOS5 and serine/arginine-rich proteins RS40 and RS41 participate in miRNA biogenesis in Arabidopsis. Nucleic Acids Res (2015) 0.80
Undesired small RNAs originate from an artificial microRNA precursor in transgenic petunia (Petunia hybrida). PLoS One (2014) 0.80
Functional organization and dynamics of the cell nucleus. Front Plant Sci (2014) 0.79
microRNA biogenesis and turnover in plants. Cold Spring Harb Symp Quant Biol (2013) 0.79
Identification of RNA silencing components in soybean and sorghum. BMC Bioinformatics (2014) 0.78
Analysis of the Microprocessor in Dictyostelium: The Role of RbdB, a dsRNA Binding Protein. PLoS Genet (2016) 0.78
Alternate approaches to repress endogenous microRNA activity in Arabidopsis thaliana. Plant Signal Behav (2011) 0.78
DNA Methylation Influences the Expression of DICER-LIKE4 Isoforms, Which Encode Proteins of Alternative Localization and Function. Plant Cell (2016) 0.78
RNA-binding protein DUS16 plays an essential role in primary miRNA processing in the unicellular alga Chlamydomonas reinhardtii. Proc Natl Acad Sci U S A (2016) 0.78
Comparative analysis of the Dicer-like gene family reveals loss of miR162 target site in SmDCL1 from Salvia miltiorrhiza. Sci Rep (2015) 0.77
Salt Stress Reveals a New Role for ARGONAUTE1 in miRNA Biogenesis at the Transcriptional and Posttranscriptional Levels. Plant Physiol (2016) 0.77
Integration of expressed sequence tag data flanking predicted RNA secondary structures facilitates novel non-coding RNA discovery. PLoS One (2011) 0.77
Role of bioinformatics in establishing microRNAs as modulators of abiotic stress responses: the new revolution. Front Physiol (2015) 0.76
Poly(A) RNAs including coding proteins RNAs occur in plant Cajal bodies. PLoS One (2014) 0.76
A specific dsRNA-binding protein complex selectively sequesters endogenous inverted-repeat siRNA precursors and inhibits their processing. Nucleic Acids Res (2017) 0.76
The Arabidopsis sickle Mutant Exhibits Altered Circadian Clock Responses to Cool Temperatures and Temperature-Dependent Alternative Splicing. Plant Cell (2016) 0.76
Assessing the Gene Content of the Megagenome: Sugar Pine (Pinus lambertiana). G3 (Bethesda) (2016) 0.76
Parallel action of AtDRB2 and RdDM in the control of transposable element expression. BMC Plant Biol (2015) 0.76
A Novel RNA-Binding Protein Involves ABA Signaling by Post-transcriptionally Repressing ABI2. Front Plant Sci (2017) 0.75
KETCH1 imports HYL1 to nucleus for miRNA biogenesis in Arabidopsis. Proc Natl Acad Sci U S A (2017) 0.75
Analyses of RNA-Seq and sRNA-Seq data reveal a complex network of anti-viral defense in TCV-infected Arabidopsis thaliana. Sci Rep (2016) 0.75
Post-transcriptional control of miRNA abundance in Arabidopsis. Plant Signal Behav (2012) 0.75
Intron Lariat RNA Inhibits MicroRNA Biogenesis by Sequestering the Dicing Complex in Arabidopsis. PLoS Genet (2016) 0.75
Aberrant mRNA transcripts and nonsense-mediated decay. F1000 Biol Rep (2009) 0.75
Structural determinants of Arabidopsis thaliana Hyponastic leaves 1 function in vivo. PLoS One (2014) 0.75
Biochemical requirements for two Dicer-like activities from wheat germ. PLoS One (2015) 0.75
Probing Evolutionary Biography of MicroRNAs and Associated Factors. Curr Genomics (2012) 0.75
Connecting the dots of RNA-directed DNA methylation in Arabidopsis thaliana. Chromosome Res (2014) 0.75
Genome-Wide Identification, Characterization, and Expression Analysis of Small RNA Biogenesis Purveyors Reveal Their Role in Regulation of Biotic Stress Responses in Three Legume Crops. Front Plant Sci (2017) 0.75
Cajal bodies and their role in plant stress and disease responses. RNA Biol (2016) 0.75
MicroRNA maturation: stepwise processing and subcellular localization. EMBO J (2002) 19.47
The Microprocessor complex mediates the genesis of microRNAs. Nature (2004) 17.70
Nuclear export of microRNA precursors. Science (2003) 16.59
Processing of primary microRNAs by the Microprocessor complex. Nature (2004) 14.59
Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex. Cell (2006) 11.98
Human microRNAs are processed from capped, polyadenylated transcripts that can also function as mRNAs. RNA (2004) 11.52
Perspective: machines for RNAi. Genes Dev (2005) 9.37
Human RISC couples microRNA biogenesis and posttranscriptional gene silencing. Cell (2005) 9.27
Arabidopsis micro-RNA biogenesis through Dicer-like 1 protein functions. Proc Natl Acad Sci U S A (2004) 6.61
Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning. Nat Genet (2006) 5.81
An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana. Cell (2006) 5.22
The Arabidopsis double-stranded RNA-binding protein HYL1 plays a role in microRNA-mediated gene regulation. Proc Natl Acad Sci U S A (2004) 4.95
Expression of Arabidopsis MIRNA genes. Plant Physiol (2005) 4.85
The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center. Cell (2006) 4.82
The nuclear dsRNA binding protein HYL1 is required for microRNA accumulation and plant development, but not posttranscriptional transgene silencing. Curr Biol (2004) 4.69
Dicer-1 and R3D1-L catalyze microRNA maturation in Drosophila. Genes Dev (2005) 4.06
Biochemical specialization within Arabidopsis RNA silencing pathways. Mol Cell (2005) 3.92
Cajal bodies: the first 100 years. Annu Rev Cell Dev Biol (2000) 3.84
Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets. Genome Biol (2004) 3.66
A mutation in the Arabidopsis HYL1 gene encoding a dsRNA binding protein affects responses to abscisic acid, auxin, and cytokinin. Plant Cell (2000) 3.33
Evidence for nuclear processing of plant micro RNA and short interfering RNA precursors. Plant Physiol (2003) 3.16
HEN1 recognizes 21-24 nt small RNA duplexes and deposits a methyl group onto the 2' OH of the 3' terminal nucleotide. Nucleic Acids Res (2006) 3.14
The interaction between DCL1 and HYL1 is important for efficient and precise processing of pri-miRNA in plant microRNA biogenesis. RNA (2006) 3.00
SERRATE is a novel nuclear regulator in primary microRNA processing in Arabidopsis. Plant J (2006) 2.98
SERRATE: a new player on the plant microRNA scene. EMBO Rep (2006) 2.78
Specific interactions between Dicer-like proteins and HYL1/DRB-family dsRNA-binding proteins in Arabidopsis thaliana. Plant Mol Biol (2005) 2.56
A distant coilin homologue is required for the formation of cajal bodies in Arabidopsis. Mol Biol Cell (2006) 1.51
The Arabidopsis double-stranded RNA-binding protein HYL1 plays a role in microRNA-mediated gene regulation. Proc Natl Acad Sci U S A (2004) 4.95
The RNA-binding proteins HYL1 and SE promote accurate in vitro processing of pri-miRNA by DCL1. Proc Natl Acad Sci U S A (2008) 2.40
Seeds of a perfect storm. Science (2008) 1.94
Dynamic regulation of ARGONAUTE4 within multiple nuclear bodies in Arabidopsis thaliana. PLoS Genet (2008) 1.30
Heterotrimeric G protein signaling in the Arabidopsis unfolded protein response. Proc Natl Acad Sci U S A (2007) 1.22
alpha- and gamma-Protocadherins negatively regulate PYK2. J Biol Chem (2008) 1.14
Standing up for GMOs. Science (2013) 0.96
We request a serious reconsideration of the recent paper by Seralini et al. alleging tumorigenesis in rats resulting from consumption of corn derived from crops improved through biotechnology (Séralini et al., 2012). Food Chem Toxicol (2012) 0.89
Temporal evolution of the Arabidopsis oxidative stress response. Plant Mol Biol (2005) 0.87
A collection of sequenced and mapped Ds transposon insertion sites in Arabidopsis thaliana. Plant Mol Biol (2002) 0.83
EPA's proposed biotech policy turns a deaf ear to science. FASEB J (2011) 0.75
StressDB: a locally installable web-based relational microarray database designed for small user communities. Comp Funct Genomics (2002) 0.75
Planting seeds for the future of food. J Sci Food Agric (2016) 0.75
Geneticist trades plants for politics. Nina Fedoroff interviewed by Emma Marris. Nature (2007) 0.75
Retrospective. Norton Zinder (1928-2012). Science (2012) 0.75
An interview with... Nina Fedoroff. Interview by Errol C. Friedberg. Nat Rev Mol Cell Biol (2008) 0.75
A comparison of group II introns of plastid tRNALysUUU genes encoding maturase protein. Cell Mol Biol Lett (2004) 0.75