Published in Int J Biol Sci on February 10, 2007
Genomic analyses identify distinct patterns of selection in domesticated pigs and Tibetan wild boars. Nat Genet (2013) 3.41
The porcine lung as a potential model for cystic fibrosis. Am J Physiol Lung Cell Mol Physiol (2008) 2.53
Linkage disequilibrium decay and haplotype block structure in the pig. Genetics (2008) 1.71
Advances in QTL mapping in pigs. Int J Biol Sci (2007) 1.42
The spatial repositioning of adipogenesis genes is correlated with their expression status in a porcine mesenchymal stem cell adipogenesis model system. Chromosoma (2009) 1.20
Assessing learning and memory in pigs. Anim Cogn (2011) 1.00
Dissecting structural and nucleotide genome-wide variation in inbred Iberian pigs. BMC Genomics (2013) 0.97
Whole-genome sequencing of Berkshire (European native pig) provides insights into its origin and domestication. Sci Rep (2014) 0.97
Swine genome science comes of age. Int J Biol Sci (2007) 0.87
Identification of selection signatures in livestock species. Genet Mol Biol (2014) 0.85
Genome sequencing and analysis of Mangalica, a fatty local pig of Hungary. BMC Genomics (2014) 0.82
Advanced technologies for genomic analysis in farm animals and its application for QTL mapping. Genetica (2008) 0.82
Introgression and isolation contributed to the development of Hungarian Mangalica pigs from a particular European ancient bloodline. Genet Sel Evol (2013) 0.79
Domestication does not narrow MHC diversity in Sus scrofa. Immunogenetics (2012) 0.79
The d-amphetamine-treated Göttingen miniature pig: an animal model for assessing behavioral effects of antipsychotics. Psychopharmacology (Berl) (2009) 0.78
Gene coexpression networks reveal key drivers of phenotypic divergence in porcine muscle. BMC Genomics (2015) 0.78
Microsatellite markers for identification and parentage analysis in the European wild boar (Sus scrofa). BMC Res Notes (2012) 0.77
Age-Related 1H NMR Characterization of Cerebrospinal Fluid in Newborn and Young Healthy Piglets. PLoS One (2016) 0.77
Characterization of Porcine Ventral Mesencephalic Precursor Cells following Long-Term Propagation in 3D Culture. Stem Cells Int (2012) 0.76
Genetic divergence in domesticated and non-domesticated gene regions of barley chromosomes. PLoS One (2015) 0.76
A genome scan for selection signatures in pigs. PLoS One (2015) 0.75
Evolutionary patterns of Toll-like receptor signaling pathway genes in the Suidae. BMC Evol Biol (2016) 0.75
Genome-wide SNP data unveils the globalization of domesticated pigs. Genet Sel Evol (2017) 0.75
Initial sequencing and analysis of the human genome. Nature (2001) 212.86
Initial sequencing and comparative analysis of the mouse genome. Nature (2002) 96.15
A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms. Nature (2001) 42.18
The hitch-hiking effect of a favourable gene. Genet Res (1974) 34.74
Initial sequence of the chimpanzee genome and comparison with the human genome. Nature (2005) 25.67
Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature (2005) 23.04
Detecting recent positive selection in the human genome from haplotype structure. Nature (2002) 22.00
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature (2004) 21.40
Ultraconserved elements in the human genome. Science (2004) 17.14
Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays. Science (2003) 16.80
Hitchhiking under positive Darwinian selection. Genetics (2000) 14.72
A genomic view of alternative splicing. Nat Genet (2002) 12.62
Genetic diversity and chloroquine selective sweeps in Plasmodium falciparum. Nature (2002) 12.09
Mobile elements: drivers of genome evolution. Science (2004) 11.78
Alternative splicing: increasing diversity in the proteomic world. Trends Genet (2001) 10.44
Interrogating a high-density SNP map for signatures of natural selection. Genome Res (2002) 10.33
Selfish DNA: the ultimate parasite. Nature (1980) 9.85
Scanning human gene deserts for long-range enhancers. Science (2003) 9.75
Selfish genes, the phenotype paradigm and genome evolution. Nature (1980) 9.66
Transcription regulation and animal diversity. Nature (2003) 9.22
Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios. Science (2003) 9.20
The effect of change in population size on DNA polymorphism. Genetics (1989) 9.10
A mutation creating a potential illegitimate microRNA target site in the myostatin gene affects muscularity in sheep. Nat Genet (2006) 8.37
The mutational spectrum of single base-pair substitutions in mRNA splice junctions of human genes: causes and consequences. Hum Genet (1992) 8.20
Molecular signatures of natural selection. Annu Rev Genet (2005) 7.51
Alternative splicing and genome complexity. Nat Genet (2001) 7.30
A deletion in the bovine myostatin gene causes the double-muscled phenotype in cattle. Nat Genet (1997) 7.15
Alternative splicing of pre-mRNA: developmental consequences and mechanisms of regulation. Annu Rev Genet (1998) 7.15
Worldwide phylogeography of wild boar reveals multiple centers of pig domestication. Science (2005) 6.92
Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss. Nat Genet (2003) 6.09
Haemophilia A resulting from de novo insertion of L1 sequences represents a novel mechanism for mutation in man. Nature (1988) 6.01
A distal enhancer and an ultraconserved exon are derived from a novel retroposon. Nature (2006) 5.98
Function of alternative splicing. Gene (2004) 5.95
Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps. Science (2005) 5.47
Positional candidate cloning of a QTL in dairy cattle: identification of a missense mutation in the bovine DGAT1 gene with major effect on milk yield and composition. Genome Res (2002) 5.45
A regulatory mutation in IGF2 causes a major QTL effect on muscle growth in the pig. Nature (2003) 5.41
How reliable are empirical genomic scans for selective sweeps? Genome Res (2006) 4.14
Conserved non-genic sequences - an unexpected feature of mammalian genomes. Nat Rev Genet (2005) 3.97
How prevalent is functional alternative splicing in the human genome? Trends Genet (2004) 3.81
Domestic-animal genomics: deciphering the genetics of complex traits. Nat Rev Genet (2004) 3.42
The origin of the domestic pig: independent domestication and subsequent introgression. Genetics (2000) 3.34
Mammalian phylogenomics comes of age. Trends Genet (2004) 3.31
ASD: the Alternative Splicing Database. Nucleic Acids Res (2004) 3.26
Simple sequence repeats as advantageous mutators in evolution. Trends Genet (2006) 3.12
DNA markers reveal the complexity of livestock domestication. Nat Rev Genet (2003) 3.07
A mutation in PRKAG3 associated with excess glycogen content in pig skeletal muscle. Science (2000) 3.06
Mutations in an oocyte-derived growth factor gene (BMP15) cause increased ovulation rate and infertility in a dosage-sensitive manner. Nat Genet (2000) 3.05
Alternative splicing and RNA selection pressure--evolutionary consequences for eukaryotic genomes. Nat Rev Genet (2006) 3.00
Evolution and functional classification of vertebrate gene deserts. Genome Res (2004) 2.92
Turning junk into gold: domestication of transposable elements and the creation of new genes in eukaryotes. Bioessays (2006) 2.71
Are splicing mutations the most frequent cause of hereditary disease? FEBS Lett (2005) 2.68
Comparison of human chromosome 21 conserved nongenic sequences (CNGs) with the mouse and dog genomes shows that their selective constraint is independent of their genic environment. Genome Res (2004) 2.58
Conservation of human alternative splice events in mouse. Nucleic Acids Res (2003) 2.35
Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing. BMC Genomics (2005) 2.34
Low conservation of alternative splicing patterns in the human and mouse genomes. Hum Mol Genet (2003) 2.30
Estimating the time since the fixation of a beneficial allele. Genetics (2003) 2.29
Alternative splicing of conserved exons is frequently species-specific in human and mouse. Trends Genet (2005) 2.26
Genome-wide scan for body composition in pigs reveals important role of imprinting. Proc Natl Acad Sci U S A (2000) 2.26
Our genome unveiled. Nature (2001) 1.95
Chromosome evolution in eukaryotes: a multi-kingdom perspective. Trends Genet (2005) 1.93
Identification of the single base change causing the callipyge muscle hypertrophy phenotype, the only known example of polar overdominance in mammals. Genome Res (2002) 1.91
Natural selection mapping of the warfarin-resistance gene. Proc Natl Acad Sci U S A (2000) 1.83
Hitchhiking mapping--functional genomics from the population genetics perspective. Trends Genet (2003) 1.81
Evolution of mammalian genome organization inferred from comparative gene mapping. Genome Biol (2001) 1.78
Swine Genome Sequencing Consortium (SGSC): a strategic roadmap for sequencing the pig genome. Comp Funct Genomics (2005) 1.75
Genome size and GC-percent in vertebrates as determined by flow cytometry: the triangular relationship. Cytometry (1998) 1.65
A 11.7-kb deletion triggers intersexuality and polledness in goats. Nat Genet (2001) 1.62
Mitochondrial diversity in European and Chinese pigs is consistent with population expansions that occurred prior to domestication. Proc Biol Sci (2006) 1.56
Mutation in bone morphogenetic protein receptor-IB is associated with increased ovulation rate in Booroola Mérino ewes. Proc Natl Acad Sci U S A (2001) 1.51
Comparative analysis of protein coding sequences from human, mouse and the domesticated pig. BMC Biol (2005) 1.51
A somatic cell hybrid panel for pig regional gene mapping characterized by molecular cytogenetics. Cytogenet Cell Genet (1996) 1.50
Construction of a whole-genome radiation hybrid panel for high-resolution gene mapping in pigs. Cytogenet Cell Genet (1998) 1.50
The complete mitochondrial DNA sequence of the pig (Sus scrofa). J Mol Evol (1998) 1.47
Piggy-BACing the human genome II. A high-resolution, physically anchored, comparative map of the porcine autosomes. Genomics (2005) 1.46
A first-generation porcine whole-genome radiation hybrid map. Mamm Genome (1999) 1.45
Genome-wide regulatory complexity in yeast promoters: separation of functionally conserved and neutral sequence. Genome Res (2005) 1.44
A phylogenetic study of the origin of the domestic pig estimated from the near-complete mtDNA genome. J Mol Evol (2001) 1.42
Construction of a swine BAC library: application to the characterization and mapping of porcine type C endoviral elements. Cytogenet Cell Genet (1999) 1.38
MCALIGN: stochastic alignment of noncoding DNA sequences based on an evolutionary model of sequence evolution. Genome Res (2004) 1.33
Phylogenetic relationships of Asian and European pig breeds determined by mitochondrial DNA D-loop sequence polymorphism. Anim Genet (2002) 1.27
Genetic diversity within and between European pig breeds using microsatellite markers. Anim Genet (2006) 1.26
Mitochondrial DNA sequence variation and phylogenetic relationships among Iberian pigs and other domestic and wild pig populations. Anim Genet (2003) 1.18
Genetic diversity of eleven European pig breeds. Genet Sel Evol (2004) 1.11
Mammalian genome mapping: lessons and prospects. Curr Opin Genet Dev (1991) 1.10
A large-fragment porcine genomic library resource in a BAC vector. Mamm Genome (2000) 1.09
LINE-1 elements and X chromosome inactivation: a function for "junk" DNA? Proc Natl Acad Sci U S A (2000) 1.09
Genetic variation analysis within and among Chinese indigenous swine populations using microsatellite markers. Anim Genet (2002) 1.08
Mitochondrial haplotypes of European wild boars with 2n = 36 are closely related to those of European domestic pigs with 2n = 38. Anim Genet (2006) 1.05
The phylogeny of Chinese indigenous pig breeds inferred from microsatellite markers. Anim Genet (2005) 1.02
Generation and characterization of a 12,000-rad radiation hybrid panel for fine mapping in pig. Cytogenet Genome Res (2002) 1.02
Genetic relationship amongst the major non-coding regions of mitochondrial DNAs in wild boars and several breeds of domesticated pigs. Anim Genet (2001) 1.02
Complete nucleotide sequence of pig (Sus scrofa) mitochondrial genome and dating evolutionary divergence within Artiodactyla. Gene (1999) 0.98
Construction and evaluation of a porcine bacterial artificial chromosome library. Anim Genet (2000) 0.97
Estimate of nucleotide diversity in dogs with a pool-and-sequence method. Mamm Genome (2000) 0.95
The IGF2-intron3-G3072A substitution explains a major imprinted QTL effect on backfat thickness in a Meishan x European white pig intercross. Genet Res (2004) 0.95
Evaluating evolutionary divergence with microsatellites. J Mol Evol (1998) 0.93
Genetic relationship and distribution of the Japanese wild boar (Sus scrofa leucomystax) and Ryukyu wild boar (Sus scrofa riukiuanus) analysed by mitochondrial DNA. Mol Ecol (1999) 0.89
Creation and disruption of protein features by alternative splicing -- a novel mechanism to modulate function. Genome Biol (2005) 0.89
Construction of a swine YAC library allowing an efficient recovery of unique and centromeric repeated sequences. Mamm Genome (1997) 0.89
Construction and characterization of a porcine P1-derived artificial chromosome (PAC) library covering 3.2 genome equivalents and cytogenetical assignment of six type I and type II loci. Mamm Genome (1999) 0.88
Analyses of pig genomes provide insight into porcine demography and evolution. Nature (2012) 5.58
Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps. Science (2005) 5.47
Design of a high density SNP genotyping assay in the pig using SNPs identified and characterized by next generation sequencing technology. PLoS One (2009) 5.26
Multilevel selection 1: Quantitative genetics of inheritance and response to selection. Genetics (2006) 2.97
A high-density SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate. Genome Res (2008) 2.70
Multilevel selection 2: Estimating the genetic parameters determining inheritance and response to selection. Genetics (2006) 2.31
The development and characterization of a 60K SNP chip for chicken. BMC Genomics (2011) 2.19
A high utility integrated map of the pig genome. Genome Biol (2007) 1.88
A high density recombination map of the pig reveals a correlation between sex-specific recombination and GC content. BMC Genomics (2012) 1.65
Regions of homozygosity in the porcine genome: consequence of demography and the recombination landscape. PLoS Genet (2012) 1.63
Genome-wide footprints of pig domestication and selection revealed through massive parallel sequencing of pooled DNA. PLoS One (2011) 1.60
Comparison of linkage disequilibrium and haplotype diversity on macro- and microchromosomes in chicken. BMC Genet (2009) 1.52
Pig genome sequence--analysis and publication strategy. BMC Genomics (2010) 1.47
Piggy-BACing the human genome II. A high-resolution, physically anchored, comparative map of the porcine autosomes. Genomics (2005) 1.46
Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project. Genome Biol (2015) 1.40
Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus. Genome Biol (2013) 1.39
Transcriptome profiling of the small intestinal epithelium in germfree versus conventional piglets. BMC Genomics (2007) 1.35
The CHD3 remodeler PICKLE associates with genes enriched for trimethylation of histone H3 lysine 27. Plant Physiol (2012) 1.27
Genetic improvement of traits affected by interactions among individuals: Sib selection schemes. Genetics (2007) 1.26
The CHD3 remodeler PICKLE promotes trimethylation of histone H3 lysine 27. J Biol Chem (2008) 1.22
Transgenic salmon: a final leap to the grocery shelf? Nat Biotechnol (2011) 1.21
Transgenic male mating advantage provides opportunity for Trojan gene effect in a fish. Proc Natl Acad Sci U S A (2004) 1.11
Quantification of the relative roles of niche and neutral processes in structuring gastrointestinal microbiomes. Proc Natl Acad Sci U S A (2012) 1.10
Genomics and clinical medicine: rationale for creating and effectively evaluating animal models. Exp Biol Med (Maywood) (2004) 1.09
Interface of biotechnology and ecology for environmental risk assessments of transgenic fish. Trends Biotechnol (2005) 1.08
Neuronal genes for subcutaneous fat thickness in human and pig are identified by local genomic sequencing and combined SNP association study. PLoS One (2011) 1.02
Multiple Asian pig origins revealed through genomic analyses. Mol Phylogenet Evol (2009) 0.95
Regiospecific control of protein expression in cells cultured on two-component counter gradients of extracellular matrix proteins. Langmuir (2005) 0.95
Twists and turns in the development and maintenance of the mammalian small intestine epithelium. Birth Defects Res C Embryo Today (2005) 0.92
Comparison and contrast of genes and biological pathways responding to Marek's disease virus infection using allele-specific expression and differential expression in broiler and layer chickens. BMC Genomics (2013) 0.87
Diet and age affect intestinal morphology and large bowel fermentative end-product concentrations in senior and young adult dogs. J Nutr (2005) 0.87
Imaging in real-time with FRET the redox response of tumorigenic cells to glutathione perturbations in a microscale flow. Integr Biol (Camb) (2010) 0.87
A cloned pig model for examining atherosclerosis induced by high fat, high cholesterol diets. Anim Biotechnol (2010) 0.86
BoLA class I allele diversity and polymorphism in a herd of cattle. Immunogenetics (2007) 0.86
Profiling of abundant proteins associated with dichlorodiphenyltrichloroethane resistance in Drosophila melanogaster. Proteomics (2005) 0.85
Isolation and molecular characterization of the porcine transforming growth factor beta type I receptor (TGFBR1) gene. Gene (2006) 0.85
Characterization of porcine pregnane X receptor, farnesoid X receptor and their splice variants. Exp Biol Med (Maywood) (2010) 0.84
Label-free imaging of cell attachment with photonic crystal enhanced microscopy. Analyst (2011) 0.84
Characterization of swine leukocyte antigen polymorphism by sequence-based and PCR-SSP methods in Meishan pigs. Immunogenetics (2006) 0.84
Genome-Wide Identification and Quantification of cis- and trans-Regulated Genes Responding to Marek's Disease Virus Infection via Analysis of Allele-Specific Expression. Front Genet (2012) 0.83
Association of the porcine transforming growth factor beta type I receptor (TGFBR1) gene with growth and carcass traits. Anim Biotechnol (2012) 0.83
Genome-wide analysis of genes associated with moderate and high DDT resistance in Drosophila melanogaster. Pest Manag Sci (2013) 0.83
Implications of age and diet on canine cerebral cortex transcription. Neurobiol Aging (2008) 0.82
Age and diet affect gene expression profile in canine skeletal muscle. PLoS One (2009) 0.82
Microfluidic platform for the study of intercellular communication via soluble factor-cell and cell-cell paracrine signaling. Biomicrofluidics (2014) 0.82
Tuning the non-equilibrium state of a drug-encapsulated poly(ethylene glycol) hydrogel for stem and progenitor cell mobilization. Biomaterials (2010) 0.81
Diversification of porcine MHC class II genes: evidence for selective advantage. Immunogenetics (2009) 0.80
Allerton III. Beyond livestock genomics. Anim Biotechnol (2003) 0.80
Modulation of systemic immune responses through commensal gastrointestinal microbiota. PLoS One (2013) 0.80
Experiences with a single-step genome evaluation. Poult Sci (2013) 0.80
Comparative analysis of the natriuretic peptide precursor gene cluster in vertebrates reveals loss of ANF and retention of CNP-3 in chicken. Dev Dyn (2005) 0.79
Effects of raclopride on aggression and stress in diversely selected chicken lines. Behav Brain Res (2006) 0.79
Creating porcine biomedical models through recombineering. Comp Funct Genomics (2004) 0.79
Age and diet affect gene expression profiles in canine liver tissue. PLoS One (2010) 0.78
High efficiency production of germ-line transgenic Japanese medaka (Oryzias latipes) by electroporation with direct current-shifted radio frequency pulses. Transgenic Res (2003) 0.78
Gene Profiling of Aortic Valve Interstitial Cells under Elevated Pressure Conditions: Modulation of Inflammatory Gene Networks. Int J Inflam (2011) 0.78
Nutritional genomics: implications for companion animals. J Nutr (2003) 0.78
Comparative genomics of xenobiotic metabolism: a porcine-human PXR gene comparison. Mamm Genome (2007) 0.78
Molecular characterization and analysis of the porcine betaine homocysteine methyltransferase and betaine homocysteine methyltransferase-2 genes. Gene (2010) 0.78
An integrated RH map of porcine chromosome 10. BMC Genomics (2009) 0.78
Gene expression profiles of colonic mucosa in healthy young adult and senior dogs. PLoS One (2010) 0.77
Compression-based distance (CBD): a simple, rapid, and accurate method for microbiota composition comparison. BMC Bioinformatics (2013) 0.77
Transcriptomic analysis of peritoneal cells in a mouse model of sepsis: confirmatory and novel results in early and late sepsis. BMC Genomics (2012) 0.77
Mapping and genotypic analysis of the NK-lysin gene in chicken. Genet Sel Evol (2014) 0.77
Large-scale sequencing based on full-length-enriched cDNA libraries in pigs: contribution to annotation of the pig genome draft sequence. BMC Genomics (2012) 0.77
Systems-scale analysis reveals pathways involved in cellular response to methamphetamine. PLoS One (2011) 0.77
Piggy-BACing the human genome I: constructing a porcine BAC physical map through comparative genomics. Anim Biotechnol (2008) 0.77
Adipose tissue gene expression profiles of healthy young adult and geriatric dogs. Arch Anim Nutr (2009) 0.77
Characterization of the porcine ATM gene: towards the generation of a novel non-murine animal model for Ataxia-Telangiectasia. Gene (2007) 0.77
Genome-wide identification of allele-specific expression (ASE) in response to Marek's disease virus infection using next generation sequencing. BMC Proc (2011) 0.76
Splicing variants of the porcine betaine-homocysteine S-methyltransferase gene: implications for mammalian metabolism. Gene (2013) 0.76
Methamphetamine causes anorexia in Drosophila melanogaster, exhausting metabolic reserves and contributing to mortality. J Toxicol Sci (2012) 0.76
A fast and efficient approach for genomic selection with high-density markers. G3 (Bethesda) (2012) 0.75
Harvesting the genomic promise: recombineering sequences for phenotypes. Anim Biotechnol (2003) 0.75
Mac-1-mediated uptake and killing of Bordetella bronchiseptica by porcine alveolar macrophages. J Vet Sci (2003) 0.75
Improved phytate phosphorus utilization by Japanese medaka transgenic for the Aspergillus niger phytase gene. Zebrafish (2005) 0.75
Pyramiding of insecticidal compounds for control of the cowpea bruchid (Callosobruchus maculatus F.). Pest Manag Sci (2007) 0.75