Published in Nat Protoc on January 01, 2007
Laboratory procedures to generate viral metagenomes. Nat Protoc (2009) 3.20
Broad surveys of DNA viral diversity obtained through viral metagenomics of mosquitoes. PLoS One (2011) 1.75
An integrative study of a meromictic lake ecosystem in Antarctica. ISME J (2010) 1.62
Diversity and abundance of single-stranded DNA viruses in human feces. Appl Environ Microbiol (2011) 1.27
Short-term observations of marine bacterial and viral communities: patterns, connections and resilience. ISME J (2013) 1.20
Metagenomic characterization of airborne viral DNA diversity in the near-surface atmosphere. J Virol (2012) 1.15
Microbial community structure and function on sinking particles in the North Pacific Subtropical Gyre. Front Microbiol (2015) 1.02
Label-free bacterial imaging with deep-UV-laser-induced native fluorescence. Appl Environ Microbiol (2010) 0.97
Determination of viral production in aquatic sediments using the dilution-based approach. Nat Protoc (2009) 0.95
Temporal variability and coherence of euphotic zone bacterial communities over a decade in the Southern California Bight. ISME J (2013) 0.94
Temporal dynamics and decay of putatively allochthonous and autochthonous viral genotypes in contrasting freshwater lakes. Appl Environ Microbiol (2012) 0.94
Major role of microbes in carbon fluxes during Austral winter in the Southern Drake Passage. PLoS One (2009) 0.94
Analogous nutrient limitations in unicellular diazotrophs and Prochlorococcus in the South Pacific Ocean. ISME J (2011) 0.92
Diversity of environmental single-stranded DNA phages revealed by PCR amplification of the partial major capsid protein. ISME J (2014) 0.92
Isolation and characterization of a psychropiezophilic alphaproteobacterium. Appl Environ Microbiol (2011) 0.91
Influence of a bacteriophage on the population dynamics of toxic dinoflagellates by lysis of algicidal bacteria. Appl Environ Microbiol (2011) 0.90
Temporal dynamics in the free-living bacterial community composition in the coastal North Sea. FEMS Microbiol Ecol (2012) 0.88
Viral distribution and life strategies in the Bach Dang Estuary, Vietnam. Microb Ecol (2011) 0.88
Study of changes in bacterial and viral abundance in formaldehyde-fixed water samples by epifluorescence microscopy. Environ Monit Assess (2010) 0.86
Environmental factors influencing gene transfer agent (GTA) mediated transduction in the subtropical ocean. PLoS One (2012) 0.86
Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years. ISME J (2014) 0.86
Correlation of shiga toxin gene frequency with commonly used microbial indicators of recreational water quality. Appl Environ Microbiol (2008) 0.84
Virus-bacterium coupling driven by both turbidity and hydrodynamics in an Amazonian floodplain lake. Appl Environ Microbiol (2010) 0.84
Membrane vesicles in natural environments: a major challenge in viral ecology. ISME J (2015) 0.82
Enumerating viruses in coral mucus. Appl Environ Microbiol (2012) 0.82
Potential Trace Metal Co-Limitation Controls on N2 Fixation and [Formula: see text] Uptake in Lakes with Varying Trophic Status. Front Microbiol (2013) 0.82
Seasonal and spatial variability of virioplanktonic abundance in Haihe River, China. Biomed Res Int (2013) 0.81
One step forwards for the routine use of high-throughput DNA sequencing in environmental monitoring. An efficient and standardizable method to maximize the detection of environmental bacteria. Microbiologyopen (2016) 0.80
Illuminating structural proteins in viral "dark matter" with metaproteomics. Proc Natl Acad Sci U S A (2016) 0.80
Viruses and bacteria in floodplain lakes along a major Amazon tributary respond to distance to the Amazon River. Front Microbiol (2015) 0.80
The phage-driven microbial loop in petroleum bioremediation. Microb Biotechnol (2010) 0.79
Total Virus and Bacteria Concentrations in Indoor and Outdoor Air. Environ Sci Technol Lett (2015) 0.79
Tetrachloromethane-Degrading Bacterial Enrichment Cultures and Isolates from a Contaminated Aquifer. Microorganisms (2015) 0.79
Enumerating viruses by using fluorescence and the nature of the nonviral background fraction. Appl Environ Microbiol (2012) 0.78
Optimizing protocols for extraction of bacteriophages prior to metagenomic analyses of phage communities in the human gut. Microbiome (2015) 0.78
Variables influencing extraction of nucleic acids from microbial plankton (viruses, bacteria, and protists) collected on nanoporous aluminum oxide filters. Appl Environ Microbiol (2014) 0.78
Membrane vesicles in sea water: heterogeneous DNA content and implications for viral abundance estimates. ISME J (2016) 0.78
Coral Mucus Is a Hot Spot for Viral Infections. Appl Environ Microbiol (2015) 0.78
Extracellular Vesicles of the Hyperthermophilic Archaeon "Thermococcus onnurineus" NA1T. Appl Environ Microbiol (2015) 0.78
An inexpensive, accurate, and precise wet-mount method for enumerating aquatic viruses. Appl Environ Microbiol (2015) 0.77
Full-field interferometry for counting and differentiating aquatic biotic nanoparticles: from laboratory to Tara Oceans. Biomed Opt Express (2016) 0.77
Comparative viral metagenomics of environmental samples from Korea. Genomics Inform (2013) 0.77
SYBR Green-activated sorting of Arabidopsis pollen nuclei based on different DNA/RNA content. Plant Reprod (2015) 0.76
A protocol for enumeration of aquatic viruses by epifluorescence microscopy using Anodisc™ 13 membranes. BMC Microbiol (2011) 0.76
Environmental dynamics as a structuring factor for microbial carbon utilization in a subtropical coastal lagoon. Front Microbiol (2013) 0.75
Can the Bacterial Community of a High Arctic Glacier Surface Escape Viral Control? Front Microbiol (2016) 0.75
Nanocalorimetric Characterization of Microbial Activity in Deep Subsurface Oceanic Crustal Fluids. Front Microbiol (2016) 0.75
Replicating phages in the epidermal mucosa of the eel (Anguilla anguilla). Front Microbiol (2015) 0.75
Efficient purification and concentration of viruses from a large body of high turbidity seawater. MethodsX (2014) 0.75
The Vitamin B1 and B12 Required by the Marine Dinoflagellate Lingulodinium polyedrum Can be Provided by its Associated Bacterial Community in Culture. Front Microbiol (2016) 0.75
Isolation and Characterization of a Shewanella Phage-Host System from the Gut of the Tunicate, Ciona intestinalis. Viruses (2017) 0.75
Abundance of Two Pelagibacter ubique Bacteriophage Genotypes along a Latitudinal Transect in the North and South Atlantic Oceans. Front Microbiol (2016) 0.75
Marine archaeal dynamics and interactions with the microbial community over 5 years from surface to seafloor. ISME J (2017) 0.75
Two Synechococcus genes, Two Different Effects on Cyanophage Infection. Viruses (2017) 0.75
Schrödinger's microbes: Tools for distinguishing the living from the dead in microbial ecosystems. Microbiome (2017) 0.75
Viral-Induced Mortality of Prokaryotes in a Tropical Monsoonal Estuary. Front Microbiol (2017) 0.75
Microbial biogeography: putting microorganisms on the map. Nat Rev Microbiol (2006) 14.24
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nat Biotechnol (2011) 7.53
Metagenomic analyses of an uncultured viral community from human feces. J Bacteriol (2003) 6.65
Defining seasonal marine microbial community dynamics. ISME J (2011) 4.61
Annually reoccurring bacterial communities are predictable from ocean conditions. Proc Natl Acad Sci U S A (2006) 4.24
A latitudinal diversity gradient in planktonic marine bacteria. Proc Natl Acad Sci U S A (2008) 4.00
Beyond biogeographic patterns: processes shaping the microbial landscape. Nat Rev Microbiol (2012) 3.20
Global patterns of bacterial beta-diversity in seafloor and seawater ecosystems. PLoS One (2011) 3.01
Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre. Environ Microbiol (2009) 2.93
Coupling 16S-ITS rDNA clone libraries and automated ribosomal intergenic spacer analysis to show marine microbial diversity: development and application to a time series. Environ Microbiol (2005) 2.80
Globally distributed uncultivated oceanic N2-fixing cyanobacteria lack oxygenic photosystem II. Science (2008) 2.66
SAR11 marine bacteria require exogenous reduced sulphur for growth. Nature (2008) 2.50
Marine bacterial, archaeal and protistan association networks reveal ecological linkages. ISME J (2011) 2.40
Proteorhodopsins: an array of physiological roles? Nat Rev Microbiol (2008) 2.38
Richness and diversity of bacterioplankton species along an estuarine gradient in Moreton Bay, Australia. Appl Environ Microbiol (2004) 2.18
Local similarity analysis reveals unique associations among marine bacterioplankton species and environmental factors. Bioinformatics (2006) 2.15
Unlocking the potential of metagenomics through replicated experimental design. Nat Biotechnol (2012) 2.08
Abundant SAR11 viruses in the ocean. Nature (2013) 2.05
Unicellular cyanobacterial distributions broaden the oceanic N2 fixation domain. Science (2010) 2.04
Marine viruses and global climate change. FEMS Microbiol Rev (2011) 2.03
Coral-associated bacterial assemblages: current knowledge and the potential for climate-driven impacts. Integr Comp Biol (2010) 1.91
Silicibacter pomeroyi sp. nov. and Roseovarius nubinhibens sp. nov., dimethylsulfoniopropionate-demethylating bacteria from marine environments. Int J Syst Evol Microbiol (2003) 1.85
A comparison of taxon co-occurrence patterns for macro- and microorganisms. Ecology (2007) 1.84
A systematic review of bisphosphonate osteonecrosis (BON) in cancer. Support Care Cancer (2010) 1.68
Microbial community structure in the North Pacific ocean. ISME J (2009) 1.64
Accurate genome relative abundance estimation based on shotgun metagenomic reads. PLoS One (2011) 1.62
Energy starved Candidatus Pelagibacter ubique substitutes light-mediated ATP production for endogenous carbon respiration. PLoS One (2011) 1.62
Unique glycine-activated riboswitch linked to glycine-serine auxotrophy in SAR11. Environ Microbiol (2009) 1.61
Tiered approach for identification of a human fecal pollution source at a recreational beach: case study at Avalon Bay, Catalina Island, California. Environ Sci Technol (2003) 1.57
Time- and sediment depth-related variations in bacterial diversity and community structure in subtidal sands. ISME J (2009) 1.55
Microbial indicators of aquatic ecosystem change: current applications to eutrophication studies. FEMS Microbiol Ecol (2003) 1.48
Global declines in oceanic nitrification rates as a consequence of ocean acidification. Proc Natl Acad Sci U S A (2010) 1.47
Global biogeography of SAR11 marine bacteria. Mol Syst Biol (2012) 1.42
Polyphyletic photosynthetic reaction centre genes in oligotrophic marine Gammaproteobacteria. Environ Microbiol (2007) 1.30
Population ecology of nitrifying archaea and bacteria in the Southern California Bight. Environ Microbiol (2010) 1.29
Rapid one-step quantitative reverse transcriptase PCR assay with competitive internal positive control for detection of enteroviruses in environmental samples. Appl Environ Microbiol (2006) 1.24
Multitiered approach using quantitative PCR to track sources of fecal pollution affecting Santa Monica Bay, California. Appl Environ Microbiol (2006) 1.23
Systematic review of laser and other light therapy for the management of oral mucositis in cancer patients. Support Care Cancer (2012) 1.23
Identification of candidate structured RNAs in the marine organism 'Candidatus Pelagibacter ubique'. BMC Genomics (2009) 1.21
Short-term observations of marine bacterial and viral communities: patterns, connections and resilience. ISME J (2013) 1.20
Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates. BMC Syst Biol (2011) 1.19
Discovery of urchin-associated densoviruses (family Parvoviridae) in coastal waters of the Big Island, Hawaii. J Gen Virol (2013) 1.18
Impacts of rainfall on the water quality of the Newport River Estuary (Eastern North Carolina, USA). J Water Health (2008) 1.16
Quantitative PCR for detection and enumeration of genetic markers of bovine fecal pollution. Appl Environ Microbiol (2007) 1.15
Genomics and physiology of a marine flavobacterium encoding a proteorhodopsin and a xanthorhodopsin-like protein. PLoS One (2013) 1.14
Efficient statistical significance approximation for local similarity analysis of high-throughput time series data. Bioinformatics (2012) 1.12
Global distribution and diversity of marine Verrucomicrobia. ISME J (2012) 1.11
Improved strategy for comparing microbial assemblage fingerprints. Microb Ecol (2006) 1.11
Molecular and microscopic evidence of viruses in marine copepods. Proc Natl Acad Sci U S A (2013) 1.06
Abundance and distribution of major groups of diazotrophic cyanobacteria and their potential contribution to N₂ fixation in the tropical Atlantic Ocean. Environ Microbiol (2010) 1.06
Dynamics and predictive modelling of Vibrio spp. in the Neuse River Estuary, North Carolina, USA. Environ Microbiol (2008) 1.05
Misannotations of rRNA can now generate 90% false positive protein matches in metatranscriptomic studies. Nucleic Acids Res (2011) 1.04
Diversity and biogeography of bacterial assemblages in surface sediments across the San Pedro Basin, Southern California Borderlands. Environ Microbiol (2007) 1.03
Rapid detection of enteroviruses in small volumes of natural waters by real-time quantitative reverse transcriptase PCR. Appl Environ Microbiol (2005) 1.00
Seasonality and monthly dynamics of marine myovirus communities. Environ Microbiol (2012) 0.99
Co-occurrence patterns for abundant marine archaeal and bacterial lineages in the deep chlorophyll maximum of coastal California. ISME J (2011) 0.98
Rapid QPCR-based assay for fecal Bacteroides spp. as a tool for assessing fecal contamination in recreational waters. Water Res (2009) 0.97
Using rapid indicators for Enterococcus to assess the risk of illness after exposure to urban runoff contaminated marine water. Water Res (2012) 0.97
Sediment-water exchange of Vibrio sp. and fecal indicator bacteria: implications for persistence and transport in the Neuse River Estuary, North Carolina, USA. Water Res (2007) 0.97
Transcriptional and translational regulatory responses to iron limitation in the globally distributed marine bacterium Candidatus pelagibacter ubique. PLoS One (2010) 0.96
Temporal variability and coherence of euphotic zone bacterial communities over a decade in the Southern California Bight. ISME J (2013) 0.94
Apparent loss of Vibrio vulnificus from North Carolina oysters coincides with a drought-induced increase in salinity. Appl Environ Microbiol (2012) 0.93
Analogous nutrient limitations in unicellular diazotrophs and Prochlorococcus in the South Pacific Ocean. ISME J (2011) 0.92
Characterization of lysogens in bacterioplankton assemblages of the southern California borderland. Microb Ecol (2007) 0.92
Correlation between quantitative PCR and culture-based methods for measuring Enterococcus spp. over various temporal scales at three California marine beaches. Appl Environ Microbiol (2011) 0.92
Recommendations following a multi-laboratory comparison of microbial source tracking methods. Water Res (2013) 0.91
Loading of fecal indicator bacteria in North Carolina tidal creek headwaters: hydrographic patterns and terrestrial runoff relationships. Water Res (2010) 0.90
Effect of platform, reference material, and quantification model on enumeration of Enterococcus by quantitative PCR methods. Water Res (2012) 0.89
Interlaboratory comparison of real-time PCR protocols for quantification of general fecal indicator bacteria. Environ Sci Technol (2011) 0.89
Beta diversity of marine bacteria depends on temporal scale. Ecology (2013) 0.88
Preservation of dental evidence following exposure to high temperatures. Forensic Sci Int (2010) 0.88
A dynamic programming algorithm for binning microbial community profiles. Bioinformatics (2006) 0.87
A systematic review of viral infections associated with oral involvement in cancer patients: a spotlight on Herpesviridea. Support Care Cancer (2010) 0.86
Abundance and distribution of diverse membrane-bound monooxygenase (Cu-MMO) genes within the Costa Rica oxygen minimum zone. Environ Microbiol Rep (2013) 0.85
Performance of viruses and bacteriophages for fecal source determination in a multi-laboratory, comparative study. Water Res (2013) 0.84
New thoughts on the pathobiology of regimen-related mucosal injury. Support Care Cancer (2006) 0.83
Characterization of Trichodesmium-associated viral communities in the eastern Gulf of Mexico. FEMS Microbiol Ecol (2013) 0.83
The role of the forensic odontologist in disaster victim identification: lessons for management. Forensic Sci Int (2010) 0.82
Metaproteomic survey of six aquatic habitats: discovering the identities of microbial populations active in biogeochemical cycling. Microb Ecol (2014) 0.82
Discovery of a novel circular DNA virus in the Forbes sea star, Asterias forbesi. Arch Virol (2015) 0.80
Application of empirical predictive modeling using conventional and alternative fecal indicator bacteria in eastern North Carolina waters. Water Res (2012) 0.79
Contrasts in concentrations and loads of conventional and alternative indicators of fecal contamination in coastal stormwater. Water Res (2011) 0.78