Published in PLoS One on May 09, 2011
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Streamlining and core genome conservation among highly divergent members of the SAR11 clade. MBio (2012) 1.94
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A metaproteomic assessment of winter and summer bacterioplankton from Antarctic Peninsula coastal surface waters. ISME J (2012) 1.34
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Away from darkness: a review on the effects of solar radiation on heterotrophic bacterioplankton activity. Front Microbiol (2013) 1.10
Comparable light stimulation of organic nutrient uptake by SAR11 and Prochlorococcus in the North Atlantic subtropical gyre. ISME J (2012) 1.02
Stimulation of growth by proteorhodopsin phototrophy involves regulation of central metabolic pathways in marine planktonic bacteria. Proc Natl Acad Sci U S A (2014) 1.02
Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage. ISME J (2014) 1.01
Phylogenetic differences in attached and free-living bacterial communities in a temperate coastal lagoon during summer, revealed via high-throughput 16S rRNA gene sequencing. Appl Environ Microbiol (2014) 0.99
Genomics of the proteorhodopsin-containing marine flavobacterium Dokdonia sp. strain MED134. Appl Environ Microbiol (2011) 0.98
Light-stimulated growth of proteorhodopsin-bearing sea-ice psychrophile Psychroflexus torquis is salinity dependent. ISME J (2013) 0.95
Evolution of small prokaryotic genomes. Front Microbiol (2015) 0.91
Niches of two polysaccharide-degrading Polaribacter isolates from the North Sea during a spring diatom bloom. ISME J (2014) 0.91
Diverse, rare microbial taxa responded to the Deepwater Horizon deep-sea hydrocarbon plume. ISME J (2015) 0.91
Ecophysiology of uncultivated marine euryarchaea is linked to particulate organic matter. ISME J (2015) 0.91
Trimethylamine and trimethylamine N-oxide are supplementary energy sources for a marine heterotrophic bacterium: implications for marine carbon and nitrogen cycling. ISME J (2014) 0.90
Function and regulation of Vibrio campbellii proteorhodopsin: acquired phototrophy in a classical organoheterotroph. PLoS One (2012) 0.90
Genomes and gene expression across light and productivity gradients in eastern subtropical Pacific microbial communities. ISME J (2014) 0.90
Generalist hydrocarbon-degrading bacterial communities in the oil-polluted water column of the North Sea. Microb Biotechnol (2014) 0.87
Ubiquitous dissolved inorganic carbon assimilation by marine bacteria in the Pacific Northwest coastal ocean as determined by stable isotope probing. PLoS One (2012) 0.87
Linking activity and function to ecosystem dynamics in a coastal bacterioplankton community. Front Microbiol (2014) 0.87
Proteorhodopsin light-enhanced growth linked to vitamin-B1 acquisition in marine Flavobacteria. ISME J (2015) 0.86
Modular community structure suggests metabolic plasticity during the transition to polar night in ice-covered Antarctic lakes. ISME J (2013) 0.85
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Growth rates and rRNA content of four marine bacteria in pure cultures and in the Delaware estuary. ISME J (2015) 0.84
Diversity and functional analysis of light-driven pumping rhodopsins in marine Flavobacteria. Microbiologyopen (2015) 0.80
Characterization of an Unconventional Rhodopsin from the Freshwater Actinobacterium Rhodoluna lacicola. J Bacteriol (2015) 0.80
Winter diversity and expression of proteorhodopsin genes in a polar ocean. ISME J (2015) 0.80
Rhodopsin gene expression regulated by the light dark cycle, light spectrum and light intensity in the dinoflagellate Prorocentrum. Front Microbiol (2015) 0.80
Light enhances survival of Dinoroseobacter shibae during long-term starvation. PLoS One (2013) 0.79
Recent advances and future perspectives in microbial phototrophy in antarctic sea ice. Biology (Basel) (2012) 0.78
Genetic Diversity Affects the Daily Transcriptional Oscillations of Marine Microbial Populations. PLoS One (2016) 0.77
Tuning fresh: radiation through rewiring of central metabolism in streamlined bacteria. ISME J (2016) 0.75
Global occurrence and heterogeneity of the Roseobacter-clade species Ruegeria mobilis. ISME J (2016) 0.75
Three-Dimensional Structure of the Ultra-oligotrophic Marine Bacterium Pelagibacter. Appl Environ Microbiol (2016) 0.75
Light-driven increase in carbon yield is linked to maintenance in the proteorhodopsin-containing Photobacterium angustum S14. Front Microbiol (2015) 0.75
Summer Abundance and Distribution of Proteorhodopsin Genes in the Western Arctic Ocean. Front Microbiol (2016) 0.75
Transcriptional Control in Marine Copiotrophic and Oligotrophic Bacteria with Streamlined Genomes. Appl Environ Microbiol (2016) 0.75
Biochemical Analysis of Microbial Rhodopsins. Curr Protoc Microbiol (2016) 0.75
In situ light responses of the proteorhodopsin-bearing Antarctic sea-ice bacterium, Psychroflexus torques. ISME J (2017) 0.75
Virioplankton Assemblage Structure in the Lower River and Ocean Continuum of the Amazon. mSphere (2017) 0.75
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics (2003) 82.89
Environmental genome shotgun sequencing of the Sargasso Sea. Science (2004) 45.23
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Genome streamlining in a cosmopolitan oceanic bacterium. Science (2005) 8.11
Operator sequences of the aerobactin operon of plasmid ColV-K30 binding the ferric uptake regulation (fur) repressor. J Bacteriol (1987) 7.06
SAR11 clade dominates ocean surface bacterioplankton communities. Nature (2002) 6.74
Proteorhodopsin phototrophy in the ocean. Nature (2001) 5.73
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A comparison of homologous recombination rates in bacteria and archaea. ISME J (2008) 3.29
Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea. Nature (2006) 3.27
Light stimulates growth of proteorhodopsin-containing marine Flavobacteria. Nature (2007) 3.20
Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre. Environ Microbiol (2009) 2.93
Functional specialization within the Fur family of metalloregulators. Biometals (2007) 2.85
Proteorhodopsin in the ubiquitous marine bacterium SAR11. Nature (2005) 2.59
Recognition of DNA by Fur: a reinterpretation of the Fur box consensus sequence. J Bacteriol (2002) 2.58
Proteorhodopsin genes are distributed among divergent marine bacterial taxa. Proc Natl Acad Sci U S A (2003) 2.53
Diversification and spectral tuning in marine proteorhodopsins. EMBO J (2003) 2.53
SAR11 marine bacteria require exogenous reduced sulphur for growth. Nature (2008) 2.50
Proteorhodopsins: an array of physiological roles? Nat Rev Microbiol (2008) 2.38
Transcriptomic and proteomic characterization of the Fur modulon in the metal-reducing bacterium Shewanella oneidensis. J Bacteriol (2004) 2.23
New insights into metabolic properties of marine bacteria encoding proteorhodopsins. PLoS Biol (2005) 2.23
Genome analysis of the proteorhodopsin-containing marine bacterium Polaribacter sp. MED152 (Flavobacteria). Proc Natl Acad Sci U S A (2008) 2.20
Transcriptional and proteomic analysis of a ferric uptake regulator (fur) mutant of Shewanella oneidensis: possible involvement of fur in energy metabolism, transcriptional regulation, and oxidative stress. Appl Environ Microbiol (2002) 2.14
Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea. ISME J (2008) 2.11
Binding of the fur (ferric uptake regulator) repressor of Escherichia coli to arrays of the GATAAT sequence. J Mol Biol (1998) 1.95
Proteorhodopsin photosystem gene expression enables photophosphorylation in a heterologous host. Proc Natl Acad Sci U S A (2007) 1.87
The SAR92 clade: an abundant coastal clade of culturable marine bacteria possessing proteorhodopsin. Appl Environ Microbiol (2007) 1.79
Proteorhodopsin phototrophy promotes survival of marine bacteria during starvation. PLoS Biol (2010) 1.77
Novel Proteorhodopsin variants from the Mediterranean and Red Seas. Environ Microbiol (2003) 1.67
Light-powering Escherichia coli with proteorhodopsin. Proc Natl Acad Sci U S A (2007) 1.59
Proteorhodopsin photosystem gene clusters exhibit co-evolutionary trends and shared ancestry among diverse marine microbial phyla. Environ Microbiol (2007) 1.41
The presence of the glycolysis operon in SAR11 genomes is positively correlated with ocean productivity. Environ Microbiol (2009) 1.36
Characterization of RS29, a blue-green proteorhodopsin variant from the Red Sea. Photochem Photobiol Sci (2004) 1.36
Environmental proteomics of microbial plankton in a highly productive coastal upwelling system. ISME J (2010) 1.34
Proteomic analysis of stationary phase in the marine bacterium "Candidatus Pelagibacter ubique". Appl Environ Microbiol (2008) 1.33
Light-dependent growth and proteorhodopsin expression by Flavobacteria and SAR11 in experiments with Delaware coastal waters. Environ Microbiol (2009) 1.28
High intraspecific recombination rate in a native population of Candidatus pelagibacter ubique (SAR11). Environ Microbiol (2007) 1.19
Constitutive expression of the proteorhodopsin gene by a flavobacterium strain representative of the proteorhodopsin-producing microbial community in the North Sea. Appl Environ Microbiol (2010) 1.14
Enhancement of survival and electricity production in an engineered bacterium by light-driven proton pumping. Appl Environ Microbiol (2010) 0.93
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Cultivation of the ubiquitous SAR11 marine bacterioplankton clade. Nature (2002) 7.08
SAR11 clade dominates ocean surface bacterioplankton communities. Nature (2002) 6.74
Climate change impacts on marine ecosystems. Ann Rev Mar Sci (2012) 4.90
High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates. Appl Environ Microbiol (2002) 4.86
Annually reoccurring bacterial communities are predictable from ocean conditions. Proc Natl Acad Sci U S A (2006) 4.24
A latitudinal diversity gradient in planktonic marine bacteria. Proc Natl Acad Sci U S A (2008) 4.00
Upwelling-driven nearshore hypoxia signals ecosystem and oceanographic changes in the northeast Pacific. Nature (2004) 3.21
Cultivation and growth characteristics of a diverse group of oligotrophic marine Gammaproteobacteria. Appl Environ Microbiol (2004) 2.80
Coupling 16S-ITS rDNA clone libraries and automated ribosomal intergenic spacer analysis to show marine microbial diversity: development and application to a time series. Environ Microbiol (2005) 2.80
Seasonal dynamics of SAR11 populations in the euphotic and mesopelagic zones of the northwestern Sargasso Sea. ISME J (2008) 2.57
SAR11 marine bacteria require exogenous reduced sulphur for growth. Nature (2008) 2.50
Marine bacterial, archaeal and protistan association networks reveal ecological linkages. ISME J (2011) 2.40
Proteorhodopsins: an array of physiological roles? Nat Rev Microbiol (2008) 2.38
Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean. Proc Natl Acad Sci U S A (2013) 2.27
Delayed upwelling alters nearshore coastal ocean ecosystems in the northern California current. Proc Natl Acad Sci U S A (2007) 2.20
Local similarity analysis reveals unique associations among marine bacterioplankton species and environmental factors. Bioinformatics (2006) 2.15
Multiple combination bactericidal testing of staphylococcal biofilms from implant-associated infections. Antimicrob Agents Chemother (2006) 2.05
Abundant SAR11 viruses in the ocean. Nature (2013) 2.05
Virus and prokaryote enumeration from planktonic aquatic environments by epifluorescence microscopy with SYBR Green I. Nat Protoc (2007) 2.03
Seasonality and vertical structure of microbial communities in an ocean gyre. ISME J (2009) 1.99
Streamlining and core genome conservation among highly divergent members of the SAR11 clade. MBio (2012) 1.94
Adult cystic fibrosis exacerbations and new strains of Pseudomonas aeruginosa. Am J Respir Crit Care Med (2003) 1.87
The SAR92 clade: an abundant coastal clade of culturable marine bacteria possessing proteorhodopsin. Appl Environ Microbiol (2007) 1.79
DNA phosphorothioation is widespread and quantized in bacterial genomes. Proc Natl Acad Sci U S A (2011) 1.69
One carbon metabolism in SAR11 pelagic marine bacteria. PLoS One (2011) 1.62
Fluids from aging ocean crust that support microbial life. Science (2003) 1.62
Unique glycine-activated riboswitch linked to glycine-serine auxotrophy in SAR11. Environ Microbiol (2009) 1.61
Complete genome sequence of Erythrobacter litoralis HTCC2594. J Bacteriol (2009) 1.54
Single and combination antibiotic susceptibilities of planktonic, adherent, and biofilm-grown Pseudomonas aeruginosa isolates cultured from sputa of adults with cystic fibrosis. J Clin Microbiol (2002) 1.53
Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data. Biol Direct (2007) 1.47
Phylogenomic evidence for a common ancestor of mitochondria and the SAR11 clade. Sci Rep (2011) 1.45
Environmental proteomics of microbial plankton in a highly productive coastal upwelling system. ISME J (2010) 1.34
Complete genome sequence of Robiginitalea biformata HTCC2501. J Bacteriol (2009) 1.33
Proteomic analysis of stationary phase in the marine bacterium "Candidatus Pelagibacter ubique". Appl Environ Microbiol (2008) 1.33
First investigation of the microbiology of the deepest layer of ocean crust. PLoS One (2010) 1.33
Lentisphaera araneosa gen. nov., sp. nov, a transparent exopolymer producing marine bacterium, and the description of a novel bacterial phylum, Lentisphaerae. Environ Microbiol (2004) 1.31
Polyphyletic photosynthetic reaction centre genes in oligotrophic marine Gammaproteobacteria. Environ Microbiol (2007) 1.30
Representative freshwater bacterioplankton isolated from Crater Lake, Oregon. Appl Environ Microbiol (2004) 1.28
Croceibacter atlanticus gen. nov., sp. nov., a novel marine bacterium in the family Flavobacteriaceae. Syst Appl Microbiol (2003) 1.27
Infection with transmissible strains of Pseudomonas aeruginosa and clinical outcomes in adults with cystic fibrosis. JAMA (2010) 1.26
Nutrient requirements for growth of the extreme oligotroph 'Candidatus Pelagibacter ubique' HTCC1062 on a defined medium. ISME J (2012) 1.26
Prokaryotic diversity, distribution, and insights into their role in biogeochemical cycling in marine basalts. ISME J (2008) 1.23
Response of a rocky intertidal ecosystem engineer and community dominant to climate change. Ecol Lett (2007) 1.22
Identification of candidate structured RNAs in the marine organism 'Candidatus Pelagibacter ubique'. BMC Genomics (2009) 1.21
Average genome size: a potential source of bias in comparative metagenomics. ISME J (2010) 1.21
Barnacle reproductive hotspots linked to nearshore ocean conditions. Proc Natl Acad Sci U S A (2005) 1.20
High intraspecific recombination rate in a native population of Candidatus pelagibacter ubique (SAR11). Environ Microbiol (2007) 1.19
High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences. ISME J (2013) 1.18
Parvularcula bermudensis gen. nov., sp. nov., a marine bacterium that forms a deep branch in the alpha-Proteobacteria. Int J Syst Evol Microbiol (2003) 1.15
Synergistic metabolism of a broad range of C1 compounds in the marine methylotrophic bacterium HTCC2181. Environ Microbiol (2011) 1.10
Multiple combination antibiotic susceptibility testing of nontypeable Haemophilus influenzae biofilms. Diagn Microbiol Infect Dis (2006) 1.08
Phytoplankton distribution patterns in the northwestern Sargasso Sea revealed by small subunit rRNA genes from plastids. ISME J (2011) 1.07
Metagenomics: microbial diversity through a scratched lens. Curr Opin Microbiol (2012) 1.07
Oceanicola granulosus gen. nov., sp. nov. and Oceanicola batsensis sp. nov., poly-beta-hydroxybutyrate-producing marine bacteria in the order 'Rhodobacterales'. Int J Syst Evol Microbiol (2004) 0.98
The phylogeny of endolithic microbes associated with marine basalts. Environ Microbiol (2007) 0.97
Genome sequences of Oceanicola granulosus HTCC2516(T) and Oceanicola batsensis HTCC2597(TDelta). J Bacteriol (2010) 0.96
Transcriptional and translational regulatory responses to iron limitation in the globally distributed marine bacterium Candidatus pelagibacter ubique. PLoS One (2010) 0.96
Fulvimarina pelagi gen. nov., sp. nov., a marine bacterium that forms a deep evolutionary lineage of descent in the order "Rhizobiales". Int J Syst Evol Microbiol (2003) 0.95
Beyond the genome: community-level analysis of the microbial world. Biol Philos (2012) 0.95
Complete genome sequence of Croceibacter atlanticus HTCC2559T. J Bacteriol (2010) 0.94
Assessment of flocked swabs for use in identification of streptococcal pharyngitis. J Clin Microbiol (2009) 0.93
Genome sequences of strains HTCC2148 and HTCC2080, belonging to the OM60/NOR5 clade of the Gammaproteobacteria. J Bacteriol (2010) 0.93
Maritimibacter alkaliphilus gen. nov., sp. nov., a genome-sequenced marine bacterium of the Roseobacter clade in the order Rhodobacterales. Int J Syst Evol Microbiol (2007) 0.93
Rapid PCR detection of group A Streptococcus from flocked throat swabs: a retrospective clinical study. Ann Clin Microbiol Antimicrob (2011) 0.92
Proteomic analysis of novel marine bacteria using MALDI and ESI mass spectrometry. J Biomol Tech (2004) 0.92
A retrospective analysis of biofilm antibiotic susceptibility testing: a better predictor of clinical response in cystic fibrosis exacerbations. J Cyst Fibros (2008) 0.92
High-resolution melting assay for the detection of gyrA mutations causing quinolone resistance in Salmonella enterica serovars Typhi and Paratyphi. Diagn Microbiol Infect Dis (2006) 0.91
Genome sequence of Lentisphaera araneosa HTCC2155T, the type species of the order Lentisphaerales in the phylum Lentisphaerae. J Bacteriol (2010) 0.91
Robiginitalea biformata gen. nov., sp. nov., a novel marine bacterium in the family Flavobacteriaceae with a higher G+C content. Int J Syst Evol Microbiol (2004) 0.91
Bacterial community composition determined by culture-independent and -dependent methods during propane-stimulated bioremediation in trichloroethene-contaminated groundwater. Environ Microbiol (2005) 0.89
Transcriptomic responses to ocean acidification in larval sea urchins from a naturally variable pH environment. Mol Ecol (2013) 0.88
A dynamic programming algorithm for binning microbial community profiles. Bioinformatics (2006) 0.87
Pelagibaca bermudensis gen. nov., sp. nov., a novel marine bacterium within the Roseobacter clade in the order Rhodobacterales. Int J Syst Evol Microbiol (2006) 0.87
Complete genome sequence of strain HTCC2170, a novel member of the genus Maribacter in the family Flavobacteriaceae. J Bacteriol (2010) 0.87
Genome sequence of the Marine Janibacter Sp. Strain HTCC2649. J Bacteriol (2010) 0.87
Nanolitre real-time PCR detection of bacterial, parasitic, and viral agents from patients with diarrhoea in Nunavut, Canada. Int J Circumpolar Health (2013) 0.85
Report of the 13(th) Genomic Standards Consortium Meeting, Shenzhen, China, March 4-7, 2012. Stand Genomic Sci (2012) 0.84
Genome sequence of Fulvimarina pelagi HTCC2506T, a Mn(II)-oxidizing alphaproteobacterium possessing an aerobic anoxygenic photosynthetic gene cluster and Xanthorhodopsin. J Bacteriol (2010) 0.84
Genome sequences of Pelagibaca bermudensis HTCC2601T and Maritimibacter alkaliphilus HTCC2654T, the type strains of two marine Roseobacter genera. J Bacteriol (2010) 0.83
Genome sequence of the novel marine member of the Gammaproteobacteria strain HTCC5015. J Bacteriol (2010) 0.83
Ruegeria pelagia sp. nov., isolated from the Sargasso Sea, Atlantic Ocean. Int J Syst Evol Microbiol (2007) 0.82
Staphylococcus lugdunensis: low prevalence and clinical significance in a pediatric microbiology laboratory. Pediatr Infect Dis J (2013) 0.81
Genome sequence of the oligotrophic marine Gammaproteobacterium HTCC2143, isolated from the Oregon Coast. J Bacteriol (2010) 0.80
MicroRNA-146a constrains multiple parameters of intestinal immunity and increases susceptibility to DSS colitis. Oncotarget (2015) 0.79
Direct Streptococcus pneumoniae real-time PCR serotyping from pediatric parapneumonic effusions. BMC Pediatr (2014) 0.79
Genome sequence of the marine alphaproteobacterium HTCC2150, assigned to the Roseobacter clade. J Bacteriol (2010) 0.79