|
1
|
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies.
|
Nucleic Acids Res
|
2003
|
11.03
|
|
2
|
The Medicago genome provides insight into the evolution of rhizobial symbioses.
|
Nature
|
2011
|
4.94
|
|
3
|
Full-length messenger RNA sequences greatly improve genome annotation.
|
Genome Biol
|
2002
|
4.90
|
|
4
|
Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology.
|
BMC Genomics
|
2006
|
4.54
|
|
5
|
Development and evaluation of an Arabidopsis whole genome Affymetrix probe array.
|
Plant J
|
2004
|
4.30
|
|
6
|
Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release.
|
BMC Biol
|
2005
|
4.18
|
|
7
|
Annotation of the Arabidopsis genome.
|
Plant Physiol
|
2003
|
3.06
|
|
8
|
Small cysteine-rich peptides resembling antimicrobial peptides have been under-predicted in plants.
|
Plant J
|
2007
|
2.71
|
|
9
|
Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes.
|
Proc Natl Acad Sci U S A
|
2006
|
2.61
|
|
10
|
Toward sequencing cotton (Gossypium) genomes.
|
Plant Physiol
|
2007
|
2.16
|
|
11
|
Transcript profiling coupled with spatial expression analyses reveals genes involved in distinct developmental stages of an arbuscular mycorrhizal symbiosis.
|
Plant Cell
|
2003
|
2.09
|
|
12
|
Accumulation of genome-specific transcripts, transcription factors and phytohormonal regulators during early stages of fiber cell development in allotetraploid cotton.
|
Plant J
|
2006
|
2.01
|
|
13
|
Genome-wide identification of nodule-specific transcripts in the model legume Medicago truncatula.
|
Plant Physiol
|
2002
|
1.89
|
|
14
|
An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions.
|
Nat Genet
|
2013
|
1.68
|
|
15
|
Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa.
|
Plant Biotechnol J
|
2011
|
1.66
|
|
16
|
Phosphorus stress in common bean: root transcript and metabolic responses.
|
Plant Physiol
|
2007
|
1.65
|
|
17
|
Arbuscular mycorrhizal symbiosis is accompanied by local and systemic alterations in gene expression and an increase in disease resistance in the shoots.
|
Plant J
|
2007
|
1.64
|
|
18
|
Legume transcription factors: global regulators of plant development and response to the environment.
|
Plant Physiol
|
2007
|
1.64
|
|
19
|
A comprehensive resource of drought- and salinity- responsive ESTs for gene discovery and marker development in chickpea (Cicer arietinum L.).
|
BMC Genomics
|
2009
|
1.61
|
|
20
|
SSWAP: A Simple Semantic Web Architecture and Protocol for semantic web services.
|
BMC Bioinformatics
|
2009
|
1.49
|
|
21
|
Novel SSR markers from BAC-end sequences, DArT arrays and a comprehensive genetic map with 1,291 marker loci for chickpea (Cicer arietinum L.).
|
PLoS One
|
2011
|
1.48
|
|
22
|
The complete chloroplast genome sequence of Gossypium hirsutum: organization and phylogenetic relationships to other angiosperms.
|
BMC Genomics
|
2006
|
1.47
|
|
23
|
Development of Arabidopsis whole-genome microarrays and their application to the discovery of binding sites for the TGA2 transcription factor in salicylic acid-treated plants.
|
Plant J
|
2006
|
1.47
|
|
24
|
A unique set of 11,008 onion expressed sequence tags reveals expressed sequence and genomic differences between the monocot orders Asparagales and Poales.
|
Plant Cell
|
2003
|
1.46
|
|
25
|
Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea (Cajanus spp.).
|
BMC Plant Biol
|
2011
|
1.45
|
|
26
|
Analysis of the cDNAs of hypothetical genes on Arabidopsis chromosome 2 reveals numerous transcript variants.
|
Plant Physiol
|
2005
|
1.44
|
|
27
|
Highly syntenic regions in the genomes of soybean, Medicago truncatula, and Arabidopsis thaliana.
|
BMC Plant Biol
|
2005
|
1.43
|
|
28
|
Sequencing and analysis of the gene-rich space of cowpea.
|
BMC Genomics
|
2008
|
1.36
|
|
29
|
Insights into the Musa genome: syntenic relationships to rice and between Musa species.
|
BMC Genomics
|
2008
|
1.30
|
|
30
|
The Soybean Genome Database (SoyGD): a browser for display of duplicated, polyploid, regions and sequence tagged sites on the integrated physical and genetic maps of Glycine max.
|
Nucleic Acids Res
|
2006
|
1.28
|
|
31
|
Cloning and sequencing of cDNAs for hypothetical genes from chromosome 2 of Arabidopsis.
|
Plant Physiol
|
2002
|
1.27
|
|
32
|
A community resource for high-throughput quantitative RT-PCR analysis of transcription factor gene expression in Medicago truncatula.
|
Plant Methods
|
2008
|
1.27
|
|
33
|
A BAC end view of the Musa acuminata genome.
|
BMC Plant Biol
|
2007
|
1.20
|
|
34
|
A newly-developed community microarray resource for transcriptome profiling in Brassica species enables the confirmation of Brassica-specific expressed sequences.
|
BMC Plant Biol
|
2009
|
1.20
|
|
35
|
Whole genome shotgun sequencing of Brassica oleracea and its application to gene discovery and annotation in Arabidopsis.
|
Genome Res
|
2005
|
1.19
|
|
36
|
Complete plastid genome sequence of Daucus carota: implications for biotechnology and phylogeny of angiosperms.
|
BMC Genomics
|
2006
|
1.17
|
|
37
|
Gene expression profiling of M. truncatula transcription factors identifies putative regulators of grain legume seed filling.
|
Plant Mol Biol
|
2008
|
1.15
|
|
38
|
Spotted cotton oligonucleotide microarrays for gene expression analysis.
|
BMC Genomics
|
2007
|
1.12
|
|
39
|
A first survey of the rye (Secale cereale) genome composition through BAC end sequencing of the short arm of chromosome 1R.
|
BMC Plant Biol
|
2008
|
1.11
|
|
40
|
Genome-wide SNP discovery in tetraploid alfalfa using 454 sequencing and high resolution melting analysis.
|
BMC Genomics
|
2011
|
1.07
|
|
41
|
Analysis of indole-3-butyric acid-induced adventitious root formation on Arabidopsis stem segments.
|
J Exp Bot
|
2005
|
1.06
|
|
42
|
Comparative analysis of 87,000 expressed sequence tags from the fumonisin-producing fungus Fusarium verticillioides.
|
Fungal Genet Biol
|
2005
|
1.06
|
|
43
|
Identification, validation and high-throughput genotyping of transcribed gene SNPs in cassava.
|
Theor Appl Genet
|
2011
|
1.04
|
|
44
|
Complexity of genome evolution by segmental rearrangement in Brassica rapa revealed by sequence-level analysis.
|
BMC Genomics
|
2009
|
1.02
|
|
45
|
Genetic mapping of expressed sequences in onion and in silico comparisons with rice show scant colinearity.
|
Mol Genet Genomics
|
2005
|
1.00
|
|
46
|
Gene expression analyses of Arabidopsis chromosome 2 using a genomic DNA amplicon microarray.
|
Genome Res
|
2003
|
0.99
|
|
47
|
Phylogenomics and the dynamic genome evolution of the genus Streptococcus.
|
Genome Biol Evol
|
2014
|
0.99
|
|
48
|
Experimental validation of novel genes predicted in the un-annotated regions of the Arabidopsis genome.
|
BMC Genomics
|
2007
|
0.91
|
|
49
|
The receptor like kinase at Rhg1-a/Rfs2 caused pleiotropic resistance to sudden death syndrome and soybean cyst nematode as a transgene by altering signaling responses.
|
BMC Genomics
|
2012
|
0.91
|
|
50
|
Simultaneous high-throughput recombinational cloning of open reading frames in closed and open configurations.
|
Plant Biotechnol J
|
2006
|
0.90
|
|
51
|
Comparative sequence and genetic analyses of asparagus BACs reveal no microsynteny with onion or rice.
|
Theor Appl Genet
|
2006
|
0.89
|
|
52
|
Comparative genomic analyses in Asparagus.
|
Genome
|
2005
|
0.89
|
|
53
|
Analysis of tall fescue ESTs representing different abiotic stresses, tissue types and developmental stages.
|
BMC Plant Biol
|
2008
|
0.87
|
|
54
|
Genomic analysis of 16 Colorado human NL63 coronaviruses identifies a new genotype, high sequence diversity in the N-terminal domain of the spike gene and evidence of recombination.
|
J Gen Virol
|
2012
|
0.86
|
|
55
|
Construction, characterization, and preliminary BAC-end sequencing analysis of a bacterial artificial chromosome library of white clover (Trifolium repens L.).
|
Genome
|
2007
|
0.84
|
|
56
|
Characterization of a recombinant canine coronavirus with a distinct receptor-binding (S1) domain.
|
Virology
|
2012
|
0.83
|
|
57
|
Pilot sequencing of onion genomic DNA reveals fragments of transposable elements, low gene densities, and significant gene enrichment after methyl filtration.
|
Mol Genet Genomics
|
2008
|
0.82
|
|
58
|
Isolation, propagation, genome analysis and epidemiology of HKU1 betacoronaviruses.
|
J Gen Virol
|
2014
|
0.81
|
|
59
|
Identification and characterization of the defensin-like gene family of grapevine.
|
Mol Plant Microbe Interact
|
2012
|
0.80
|
|
60
|
High throughput generation of promoter reporter (GFP) transgenic lines of low expressing genes in Arabidopsis and analysis of their expression patterns.
|
Plant Methods
|
2010
|
0.79
|