Published in Bioinformatics on June 28, 2007
Exploring the sequence determinants of amyloid structure using position-specific scoring matrices. Nat Methods (2010) 2.74
Amyloidogenic determinants are usually not buried. BMC Struct Biol (2009) 1.31
Prediction of amyloid fibril-forming segments based on a support vector machine. BMC Bioinformatics (2009) 1.16
A consensus method for the prediction of 'aggregation-prone' peptides in globular proteins. PLoS One (2013) 1.08
Frustration in the energy landscapes of multidomain protein misfolding. Proc Natl Acad Sci U S A (2013) 1.06
PASTA 2.0: an improved server for protein aggregation prediction. Nucleic Acids Res (2014) 1.04
Aggregation propensity of the human proteome. PLoS Comput Biol (2008) 1.00
Amyloid-Forming Properties of Human Apolipoproteins: Sequence Analyses and Structural Insights. Adv Exp Med Biol (2015) 0.98
Generating extracellular amyloid aggregates using E. coli cells. Genes Dev (2012) 0.98
Amyloidogenic regions and interaction surfaces overlap in globular proteins related to conformational diseases. PLoS Comput Biol (2009) 0.94
Exploiting heterogeneous features to improve in silico prediction of peptide status - amyloidogenic or non-amyloidogenic. BMC Bioinformatics (2011) 0.93
Using simple artificial intelligence methods for predicting amyloidogenesis in antibodies. BMC Bioinformatics (2010) 0.90
Amylin uncovered: a review on the polypeptide responsible for type II diabetes. Biomed Res Int (2013) 0.89
Machine learning methods can replace 3D profile method in classification of amyloidogenic hexapeptides. BMC Bioinformatics (2013) 0.88
MetAmyl: a METa-predictor for AMYLoid proteins. PLoS One (2013) 0.84
FISH Amyloid - a new method for finding amyloidogenic segments in proteins based on site specific co-occurrence of aminoacids. BMC Bioinformatics (2014) 0.83
Changes in protein structure and distribution observed at pre-clinical stages of scrapie pathogenesis. Biochim Biophys Acta (2008) 0.83
Motif mining: an assessment and perspective for amyloid fibril prediction tool. Bioinformation (2012) 0.83
Fibril-forming motifs are essential and sufficient for the fibrillization of human Tau. PLoS One (2012) 0.80
Cooperativity among short amyloid stretches in long amyloidogenic sequences. PLoS One (2012) 0.80
On the amyloid datasets used for training PAFIG--how (not) to extend the experimental dataset of hexapeptides. BMC Bioinformatics (2013) 0.80
Optimal molecular structures of prion AGAAAAGA amyloid fibrils formatted by simulated annealing. J Mol Model (2010) 0.78
Sequence complexity of amyloidogenic regions in intrinsically disordered human proteins. PLoS One (2014) 0.77
Carnosine's effect on amyloid fibril formation and induced cytotoxicity of lysozyme. PLoS One (2013) 0.76
Hot spots in apolipoprotein A-II misfolding and amyloidosis in mice and men. FEBS Lett (2014) 0.76
The C-terminal amyloidogenic peptide contributes to self-assembly of Avibirnavirus viral protease. Sci Rep (2015) 0.75
Computational approaches to understanding protein aggregation in neurodegeneration. J Mol Cell Biol (2014) 0.75
Factors affecting the physical stability (aggregation) of peptide therapeutics. Interface Focus (2017) 0.75
Further development and validation of empirical scoring functions for structure-based binding affinity prediction. J Comput Aided Mol Des (2002) 5.65
Whole-genome and whole-exome sequencing of bladder cancer identifies frequent alterations in genes involved in sister chromatid cohesion and segregation. Nat Genet (2013) 3.87
Nongenetic method for purifying stem cell-derived cardiomyocytes. Nat Methods (2009) 2.64
Sox2 cooperates with inflammation-mediated Stat3 activation in the malignant transformation of foregut basal progenitor cells. Cell Stem Cell (2013) 2.23
Unexpected role of interferon-γ in regulating neuronal connectivity and social behaviour. Nature (2016) 2.21
Robustness and modular design of the Drosophila segment polarity network. Mol Syst Biol (2006) 2.06
BMP receptor signaling is required for postnatal maintenance of articular cartilage. PLoS Biol (2004) 2.05
SDIR1 is a RING finger E3 ligase that positively regulates stress-responsive abscisic acid signaling in Arabidopsis. Plant Cell (2007) 2.02
MicroRNA 23b regulates autophagy associated with radioresistance of pancreatic cancer cells. Gastroenterology (2013) 2.00
Enrichment of lung microbiome with supraglottic taxa is associated with increased pulmonary inflammation. Microbiome (2013) 1.98
Highly specific gene silencing by artificial miRNAs in rice. PLoS One (2008) 1.85
Thymosin alpha1- and ulinastatin-based immunomodulatory strategy for sepsis arising from intra-abdominal infection due to carbapenem-resistant bacteria. J Infect Dis (2008) 1.78
Simultaneous determination of catechins, caffeine and gallic acids in green, Oolong, black and pu-erh teas using HPLC with a photodiode array detector. Talanta (2002) 1.78
ALK1 signaling regulates early postnatal lymphatic vessel development. Blood (2009) 1.76
Finding multiple target optimal intervention in disease-related molecular network. Mol Syst Biol (2008) 1.70
Adenovirus-mediated small-interference RNA for in vivo silencing of angiotensin AT1a receptors in mouse brain. Hypertension (2005) 1.60
Biosynthesis, purification, and substrate specificity of severe acute respiratory syndrome coronavirus 3C-like proteinase. J Biol Chem (2003) 1.54
Obesity-related glomerulopathy: body mass index and proteinuria. Clin J Am Soc Nephrol (2010) 1.54
A proteome chip approach reveals new DNA damage recognition activities in Escherichia coli. Nat Methods (2007) 1.54
Retroperitoneal laparoscopic anatrophic nephrolithotomy for large staghorn calculi. Int J Urol (2010) 1.53
Role of splanchnic hemodynamics in liver regeneration after living donor liver transplantation. Liver Transpl (2009) 1.53
Expression of PTEN and mTOR in sacral chordoma and association with poor prognosis. Med Oncol (2014) 1.50
Computation of octanol-water partition coefficients by guiding an additive model with knowledge. J Chem Inf Model (2007) 1.49
Integrative genetic analysis of transcription modules: towards filling the gap between genetic loci and inherited traits. Hum Mol Genet (2005) 1.46
Microfluidic chip for low-flow push-pull perfusion sampling in vivo with on-line analysis of amino acids. Anal Chem (2005) 1.45
In vitro pharmacologic testing using human induced pluripotent stem cell-derived cardiomyocytes. Biochem Biophys Res Commun (2009) 1.44
Enhanced anti-tumor efficacy by co-delivery of doxorubicin and paclitaxel with amphiphilic methoxy PEG-PLGA copolymer nanoparticles. Biomaterials (2011) 1.36
Structure-based method for analyzing protein-protein interfaces. J Mol Model (2003) 1.35
The Reference Genome of the Halophytic Plant Eutrema salsugineum. Front Plant Sci (2013) 1.34
M phase phosphorylation of the epigenetic regulator UHRF1 regulates its physical association with the deubiquitylase USP7 and stability. Proc Natl Acad Sci U S A (2012) 1.32
Nonnatural protein-protein interaction-pair design by key residues grafting. Proc Natl Acad Sci U S A (2007) 1.30
Potential of mean force for protein-protein interaction studies. Proteins (2002) 1.24
Mineral formation in joints caused by complete or joint-specific loss of ANK function. J Bone Miner Res (2006) 1.20
Rapid screening of anabolic steroids in urine by reactive desorption electrospray ionization. Anal Chem (2007) 1.19
BSCTV C2 attenuates the degradation of SAMDC1 to suppress DNA methylation-mediated gene silencing in Arabidopsis. Plant Cell (2011) 1.18
E-cadherin-coated plates maintain pluripotent ES cells without colony formation. PLoS One (2006) 1.17
G-CSF promotes the proliferation of developing cardiomyocytes in vivo and in derivation from ESCs and iPSCs. Cell Stem Cell (2010) 1.16
Online mass spectrometric analysis of proteins/peptides following electrolytic cleavage of disulfide bonds. J Proteome Res (2011) 1.15
Predicting outcomes after traumatic brain injury: the development and validation of prognostic models based on admission characteristics. J Trauma Acute Care Surg (2012) 1.15
Dynamic simulations on the arachidonic acid metabolic network. PLoS Comput Biol (2007) 1.14
DNA binding mechanism revealed by high resolution crystal structure of Arabidopsis thaliana WRKY1 protein. Nucleic Acids Res (2007) 1.14
Knockout of the AtCESA2 gene affects microtubule orientation and causes abnormal cell expansion in Arabidopsis. Plant Physiol (2006) 1.13
The Notch1-Dll4 signaling pathway regulates mouse postnatal lymphatic development. Blood (2011) 1.13
RKP, a RING finger E3 ligase induced by BSCTV C4 protein, affects geminivirus infection by regulation of the plant cell cycle. Plant J (2008) 1.12
The serum miR-21 level serves as a predictor for the chemosensitivity of advanced pancreatic cancer, and miR-21 expression confers chemoresistance by targeting FasL. Mol Oncol (2012) 1.11
CH...O hydrogen bonds at protein-protein interfaces. J Biol Chem (2002) 1.10
Structures of human N-Acetylglucosamine kinase in two complexes with N-Acetylglucosamine and with ADP/glucose: insights into substrate specificity and regulation. J Mol Biol (2006) 1.09
Upregulation of ionotropic glutamate receptor subunits within specific mesocorticolimbic regions during chronic nicotine self-administration. Neuropsychopharmacology (2006) 1.09
Utility of neut-X, neut-Y and neut-Z parameters for rapidly assessing sepsis in tumor patients. Clin Chim Acta (2013) 1.08
3C-like proteinase from SARS coronavirus catalyzes substrate hydrolysis by a general base mechanism. Biochemistry (2004) 1.08
Discovery of multitarget inhibitors by combining molecular docking with common pharmacophore matching. J Med Chem (2008) 1.08
Dynamic expression of imprinted genes associates with maternally controlled nutrient allocation during maize endosperm development. Plant Cell (2013) 1.07
Melatonin and its potential biological functions in the fruits of sweet cherry. J Pineal Res (2013) 1.07
Nitrogen-doped graphene foams as metal-free counter electrodes in high-performance dye-sensitized solar cells. Angew Chem Int Ed Engl (2012) 1.07
Quality assessment of protein structure models. Curr Protein Pept Sci (2009) 1.07
Ticlopidine-, clopidogrel-, and prasugrel-associated thrombotic thrombocytopenic purpura: a 20-year review from the Southern Network on Adverse Reactions (SONAR). Semin Thromb Hemost (2012) 1.06
Polymicrobial infection with major periodontal pathogens induced periodontal disease and aortic atherosclerosis in hyperlipidemic ApoE(null) mice. PLoS One (2013) 1.06
Effect of transcription peptide inhibitors on HIV-1 replication. Virology (2008) 1.06
Downregulation of gas5 increases pancreatic cancer cell proliferation by regulating CDK6. Cell Tissue Res (2013) 1.06
Metastatic tumor evolution and organoid modeling implicate TGFBR2 as a cancer driver in diffuse gastric cancer. Genome Biol (2014) 1.05
Molecular dynamics simulations on the oligomer-formation process of the GNNQQNY peptide from yeast prion protein Sup35. Biophys J (2007) 1.05
Ocular pharmacokinetics of bevacizumab in vitrectomized eyes with silicone oil tamponade. Invest Ophthalmol Vis Sci (2012) 1.04
Splice variant of the SND1 transcription factor is a dominant negative of SND1 members and their regulation in Populus trichocarpa. Proc Natl Acad Sci U S A (2012) 1.04
Combining gene expression QTL mapping and phenotypic spectrum analysis to uncover gene regulatory relationships. Mamm Genome (2006) 1.04
Electrochemistry-assisted top-down characterization of disulfide-containing proteins. Anal Chem (2012) 1.04
Isatin compounds as noncovalent SARS coronavirus 3C-like protease inhibitors. J Med Chem (2006) 1.04
Direct analysis of liquid samples by desorption electrospray ionization-mass spectrometry (DESI-MS). J Am Soc Mass Spectrom (2008) 1.04
Formation of amyloid fibrils from fully reduced hen egg white lysozyme. Protein Sci (2004) 1.03
Development of insect-resistant transgenic rice with Cry1C*-free endosperm. Pest Manag Sci (2009) 1.03
[Research report of experimental database establishment of digitized virtual Chinese No.1 female]. Di Yi Jun Yi Da Xue Xue Bao (2003) 1.02
Suppression of SARS-CoV entry by peptides corresponding to heptad regions on spike glycoprotein. Biochem Biophys Res Commun (2004) 1.02
Coupling of liquid chromatography with mass spectrometry by desorption electrospray ionization (DESI). Chem Commun (Camb) (2011) 1.02
D-dimer as a predictor of progressive hemorrhagic injury in patients with traumatic brain injury: analysis of 194 cases. Neurosurg Rev (2010) 1.02
Water mass interaction in the confluence zone of the Daning River and the Yangtze River--a driving force for algal growth in the Three Gorges Reservoir. Environ Sci Pollut Res Int (2012) 1.01
Prediction of potential drug targets based on simple sequence properties. BMC Bioinformatics (2007) 1.01
The substrate specificity of SARS coronavirus 3C-like proteinase. Biochem Biophys Res Commun (2005) 1.01
Process-based network decomposition reveals backbone motif structure. Proc Natl Acad Sci U S A (2010) 1.01
Discovering potent small molecule inhibitors of cyclophilin A using de novo drug design approach. J Med Chem (2009) 1.01
Sodium tanshinone IIA sulfonate depresses angiotensin II-induced cardiomyocyte hypertrophy through MEK/ERK pathway. Exp Mol Med (2007) 1.00
Sulfate radical anion as a new reagent for fast photochemical oxidation of proteins. Anal Chem (2010) 1.00
The N-terminal octapeptide acts as a dimerization inhibitor of SARS coronavirus 3C-like proteinase. Biochem Biophys Res Commun (2005) 1.00
Interactive effects of nitrogen and phosphorus on soil microbial communities in a tropical forest. PLoS One (2013) 0.99
In vivo pharmacokinetic features, toxicity profile, and chemosensitizing activity of alpha-cyano-beta-hydroxy-beta- methyl-N-(2,5-dibromophenyl)propenamide (LFM-A13), a novel antileukemic agent targeting Bruton's tyrosine kinase. Clin Cancer Res (2002) 0.99
Dual role of Ski in pancreatic cancer cells: tumor-promoting versus metastasis-suppressive function. Carcinogenesis (2009) 0.98
A repeated lie becomes a truth? The effect of intentional control and training on deception. Front Psychol (2012) 0.98
Clinical characterization of comatose patients with cervical spine injury and traumatic brain injury. J Trauma (2009) 0.98
High-performance liquid chromatographic method for simultaneous determination of sophoridine and matrine in rat plasma. Biomed Chromatogr (2004) 0.98
Identification of candidate genes of QTLs for seed weight in Brassica napus through comparative mapping among Arabidopsis and Brassica species. BMC Genet (2012) 0.97
Validation of the Oxford classification of IgA nephropathy for pediatric patients from China. BMC Nephrol (2012) 0.97
Yolk-shell structure of polyaniline-coated sulfur for lithium-sulfur batteries. J Am Chem Soc (2013) 0.96
Ski acts as therapeutic target of qingyihuaji formula in the treatment of SW1990 pancreatic cancer. Integr Cancer Ther (2010) 0.96
Effect of desensitising toothpastes on dentinal tubule occlusion: a dentine permeability measurement and SEM in vitro study. J Dent (2010) 0.96
Engineering a uranyl-specific binding protein from NikR. Angew Chem Int Ed Engl (2009) 0.96
Online coupling of electrochemical reactions with liquid sample desorption electrospray ionization-mass spectrometry. Anal Chem (2009) 0.96
LigBuilder 2: a practical de novo drug design approach. J Chem Inf Model (2011) 0.96
Rapid trace detection of triacetone triperoxide (TATP) by complexation reactions during desorption electrospray ionization. Chem Commun (Camb) (2006) 0.95
PARP-1 Val762Ala polymorphism, CagA+ H. pylori infection and risk for gastric cancer in Han Chinese population. Mol Biol Rep (2008) 0.95
Only one protomer is active in the dimer of SARS 3C-like proteinase. J Biol Chem (2006) 0.95