Published in Biochemistry on July 07, 2007
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Fabrication of Ag@SiO(2)@Y(2)O(3):Er nanostructures for bioimaging: tuning of the upconversion fluorescence with silver nanoparticles. J Am Chem Soc (2010) 1.35
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Controlled spacing of cationic gold nanoparticles by nanocrown RNA. J Am Chem Soc (2005) 1.09
Reagentless, electrochemical approach for the specific detection of double- and single-stranded DNA binding proteins. Anal Chem (2009) 1.08
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Simultaneous DNA binding and bending by EcoRV endonuclease observed by real-time fluorescence. Biochemistry (2003) 1.06
The mechanism of target base attack in DNA cytosine carbon 5 methylation. Biochemistry (2004) 1.06
Detection of sequence-specific protein-DNA interactions via surface enhanced resonance Raman scattering. J Am Chem Soc (2007) 1.01
Statistical coevolution analysis and molecular dynamics: identification of amino acid pairs essential for catalysis. Proc Natl Acad Sci U S A (2005) 1.01
The early expressed HIV-1 genes regulate DNMT1 expression. Epigenetics (2008) 1.00
Mapping local pH in live cells using encapsulated fluorescent SERS nanotags. Small (2010) 1.00
Oligomerization of DNMT3A controls the mechanism of de novo DNA methylation. J Biol Chem (2011) 0.99
The role of high affinity non-specific DNA binding by Lrp in transcriptional regulation and DNA organization. J Mol Biol (2007) 0.98
Formation of m2G6 in Methanocaldococcus jannaschii tRNA catalyzed by the novel methyltransferase Trm14. Nucleic Acids Res (2011) 0.96
Identification of a second DNA binding site in human DNA methyltransferase 3A by substrate inhibition and domain deletion. Arch Biochem Biophys (2010) 0.96
The role of Arg165 towards base flipping, base stabilization and catalysis in M.HhaI. J Mol Biol (2006) 0.95
Cell-targeted self-assembled DNA nanostructures. J Am Chem Soc (2009) 0.95
A portable albumin binder from a DNA-encoded chemical library. Angew Chem Int Ed Engl (2008) 0.95
Emodin inhibits the growth of hepatoma cells: finding the common anti-cancer pathway using Huh7, Hep3B, and HepG2 cells. Biochem Biophys Res Commun (2009) 0.94
New strategy for the extension of the serum half-life of antibody fragments. Bioconjug Chem (2009) 0.93
GATC flanking sequences regulate Dam activity: evidence for how Dam specificity may influence pap expression. J Mol Biol (2005) 0.93
RNA modulation of the human DNA methyltransferase 3A. Nucleic Acids Res (2012) 0.93
Chemically patterned microspheres for controlled nanoparticle assembly in the construction of SERS hot spots. J Am Chem Soc (2007) 0.92
Selective inhibitors of bacterial DNA adenine methyltransferases. J Biomol Screen (2006) 0.92
Competitive Lrp and Dam assembly at the pap regulatory region: implications for mechanisms of epigenetic regulation. J Mol Biol (2008) 0.92
Tracking transcription factor complexes on DNA using total internal reflectance fluorescence protein binding microarrays. Nucleic Acids Res (2009) 0.91
Facile synthesis of naphthoquinone spiroketals by diastereoselective oxidative [3 + 2] cycloaddition. Org Lett (2007) 0.91
A heterogeneous PNA-based SERS method for DNA detection. J Am Chem Soc (2007) 0.90
Transcription factor beacons for the quantitative detection of DNA binding activity. J Am Chem Soc (2011) 0.90
Specific and sensitive detection of nucleic acids and RNases using gold nanoparticle-RNA-fluorescent dye conjugates. Chem Commun (Camb) (2007) 0.90
Simultaneous DNA binding, bending, and base flipping: evidence for a novel M.EcoRI methyltransferase-DNA complex. J Biol Chem (2004) 0.89
Enzyme-directed positioning of nanoparticles on large DNA templates. Bioconjug Chem (2007) 0.89
Long-range structural and dynamical changes induced by cofactor binding in DNA methyltransferase M.HhaI. Biochemistry (2007) 0.89
Conformational transitions as determinants of specificity for the DNA methyltransferase EcoRI. J Biol Chem (2006) 0.88
Mechanism of allosteric regulation of Dnmt1's processivity. Biochemistry (2005) 0.87
Functional analysis of BamHI DNA cytosine-N4 methyltransferase. J Mol Biol (2003) 0.85
AdoMet-dependent methyl-transfer: Glu119 is essential for DNA C5-cytosine methyltransferase M.HhaI. J Mol Biol (2007) 0.85
Modular plasmonic nanocarriers for efficient and targeted delivery of cancer-therapeutic siRNA. Nano Lett (2014) 0.84
Isolation of potent and specific trypsin inhibitors from a DNA-encoded chemical library. Bioconjug Chem (2010) 0.84
Single- and two-photon properties of a dye-derivatized Roussin's red salt ester (Fe2(mu-RS)2(NO)4) with a large TPA cross section. Inorg Chem (2007) 0.84
Enzymatic manipulation of DNA-nanomaterial constructs. J Am Chem Soc (2002) 0.84
Determinants of sequence-specific DNA methylation: target recognition and catalysis are coupled in M.HhaI. Biochemistry (2006) 0.84
Escherichia coli DNA adenine methyltransferase: intrasite processivity and substrate-induced dimerization and activation. Biochemistry (2009) 0.84
Robust SERS enhancement factor statistics using rotational correlation spectroscopy. Nano Lett (2012) 0.84
Coupling sequence-specific recognition to DNA modification. J Biol Chem (2009) 0.83
Modulation of Escherichia coli DNA methyltransferase activity by biologically derived GATC-flanking sequences. J Biol Chem (2008) 0.83
Determinants of precatalytic conformational transitions in the DNA cytosine methyltransferase M.HhaI. Biochemistry (2011) 0.82
A novel interaction between interferon-inducible protein p56 and ribosomal protein L15 in gastric cancer cells. DNA Cell Biol (2011) 0.81
STAT1:DNA sequence-dependent binding modulation by phosphorylation, protein:protein interactions and small-molecule inhibition. Nucleic Acids Res (2012) 0.81
Molecular scale architecture: engineered three- and four-way junctions. Bioconjug Chem (2007) 0.81
Coumarins hinged directly on benzimidazoles and their ribofuranosides to inhibit hepatitis C virus. Eur J Med Chem (2013) 0.81
History of deliberate self-harm and its association with mood fluctuation. J Affect Disord (2004) 0.80
Differential stabilization of reaction intermediates: specificity checkpoints for M.EcoRI revealed by transient fluorescence and fluorescence lifetime studies. Nucleic Acids Res (2008) 0.80
Distal structural elements coordinate a conserved base flipping network. Biochemistry (2013) 0.79
Engineered extrahelical base destabilization enhances sequence discrimination of DNA methyltransferase M.HhaI. J Mol Biol (2006) 0.79
A potent cell-active allosteric inhibitor of murine DNA cytosine C5 methyltransferase. J Biol Chem (2002) 0.79
Site-directed spin labeling electron paramagnetic resonance study of the ORF1 protein from a mouse L1 retrotransposon. Protein Sci (2011) 0.79
DNA methylation modulates Salmonella enterica serovar Typhimurium virulence in Caenorhabditis elegans. FEMS Microbiol Lett (2005) 0.79
A new strategy for detection and development of tractable telomerase inhibitors. J Med Chem (2012) 0.79
Bacteriophage T4Dam (DNA-(adenine-N6)-methyltransferase): evidence for two distinct stages of methylation under single turnover conditions. J Biol Chem (2003) 0.78
Escherichia coli DNA adenine methyltransferase: the structural basis of processive catalysis and indirect read-out. J Biol Chem (2009) 0.78
Targeted intracellular delivery of proteins with spatial and temporal control. Mol Pharm (2014) 0.78
DNA (cytosine-N4-)- and -(adenine-N6-)-methyltransferases have different kinetic mechanisms but the same reaction route. A comparison of M.BamHI and T4 Dam. J Biol Chem (2003) 0.77
The recognition pathway for the DNA cytosine methyltransferase M.HhaI. Biochemistry (2009) 0.77
Synthesis, bifunctionalization, and remarkable adsorption performance of benzene-bridged periodic mesoporous organosilicas functionalized with high loadings of carboxylic acids. Chemistry (2013) 0.77
Self-assembly of DNA arrays into multilayer stacks. Langmuir (2009) 0.77
Murine DNA cytosine C(5)-methyltransferase: in vitro studies of de novo methylation spreading. Biochem Biophys Res Commun (2003) 0.77
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Molecular drivers of base flipping during sequence-specific DNA methylation. Chembiochem (2012) 0.76
Enzyme-promoted base flipping controls DNA methylation fidelity. Biochemistry (2013) 0.76
Distinct facilitated diffusion mechanisms by E. coli Type II restriction endonucleases. Biochemistry (2014) 0.76
Gold nanoparticle decoration of DNA on silicon. Langmuir (2005) 0.76
Location and conformation of amyloid β(25-35) peptide and its sequence-shuffled peptides within membranes: implications for aggregation and toxicity in PC12 cells. ChemMedChem (2014) 0.75
Synthesis of hierarchical micro/mesoporous structures via solid-aqueous interface growth: zeolitic imidazolate framework-8 on siliceous mesocellular foams for enhanced pervaporation of water/ethanol mixtures. ACS Appl Mater Interfaces (2014) 0.75