Published in Genome Res on July 10, 2007
Whole-genome sequencing of multiple Arabidopsis thaliana populations. Nat Genet (2011) 6.59
Robust demographic inference from genomic and SNP data. PLoS Genet (2013) 2.48
Population genomic and genome-wide association studies of agroclimatic traits in sorghum. Proc Natl Acad Sci U S A (2012) 2.40
Identification of genomic regions associated with phenotypic variation between dog breeds using selection mapping. PLoS Genet (2011) 2.24
Population genomic analysis of strain variation in Leptospirillum group II bacteria involved in acid mine drainage formation. PLoS Biol (2008) 1.80
Death of PRDM9 coincides with stabilization of the recombination landscape in the dog genome. Genome Res (2011) 1.62
Genomics of divergence along a continuum of parapatric population differentiation. PLoS Genet (2015) 1.57
Estimating meiotic gene conversion rates from population genetic data. Genetics (2007) 1.42
Stable recombination hotspots in birds. Science (2015) 1.36
Arabidopsis meiotic crossover hot spots overlap with H2A.Z nucleosomes at gene promoters. Nat Genet (2013) 1.29
Genome-wide fine-scale recombination rate variation in Drosophila melanogaster. PLoS Genet (2012) 1.28
Conservation of recombination hotspots in yeast. Proc Natl Acad Sci U S A (2010) 1.21
Chromosome-wide linkage disequilibrium caused by an inversion polymorphism in the white-throated sparrow (Zonotrichia albicollis). Heredity (Edinb) (2010) 1.14
Transancestral mapping of the MHC region in systemic lupus erythematosus identifies new independent and interacting loci at MSH5, HLA-DPB1 and HLA-G. Ann Rheum Dis (2012) 1.12
Multilocus sequence analysis of the marine bacterial genus Tenacibaculum suggests parallel evolution of fish pathogenicity and endemic colonization of aquaculture systems. Appl Environ Microbiol (2014) 1.02
Fine-scale population recombination rates, hotspots, and correlates of recombination in the Medicago truncatula genome. Genome Biol Evol (2012) 0.99
Critical assessment of coalescent simulators in modeling recombination hotspots in genomic sequences. BMC Bioinformatics (2014) 0.99
Fine-scale maps of recombination rates and hotspots in the mouse genome. Genetics (2012) 0.99
Efficient inference of recombination hot regions in bacterial genomes. Mol Biol Evol (2014) 0.99
Population genomic inference of recombination rates and hotspots. Proc Natl Acad Sci U S A (2009) 0.97
Contrasting methods of quantifying fine structure of human recombination. Annu Rev Genomics Hum Genet (2010) 0.95
Detecting sequence polymorphisms associated with meiotic recombination hotspots in the human genome. Genome Biol (2010) 0.92
Insertion and deletion processes in recent human history. PLoS One (2010) 0.91
A new method to reconstruct recombination events at a genomic scale. PLoS Comput Biol (2010) 0.90
Genetic crossovers are predicted accurately by the computed human recombination map. PLoS Genet (2010) 0.90
Trans-ancestral studies fine map the SLE-susceptibility locus TNFSF4. PLoS Genet (2013) 0.90
Construction of Ultradense Linkage Maps with Lep-MAP2: Stickleback F2 Recombinant Crosses as an Example. Genome Biol Evol (2015) 0.89
Strong signature of natural selection within an FHIT intron implicated in prostate cancer risk. PLoS One (2008) 0.87
Sexuality generates diversity in the aflatoxin gene cluster: evidence on a global scale. PLoS Pathog (2013) 0.86
Inferring genome-wide recombination landscapes from advanced intercross lines: application to yeast crosses. PLoS One (2013) 0.85
MLST-based inference of genetic diversity and population structure of clinical Klebsiella pneumoniae, China. Sci Rep (2015) 0.83
Sympatric speciation revealed by genome-wide divergence in the blind mole rat Spalax. Proc Natl Acad Sci U S A (2015) 0.83
Genomic signatures of distributive conjugal transfer among mycobacteria. Genome Biol Evol (2014) 0.83
The 8p23 inversion polymorphism determines local recombination heterogeneity across human populations. Genome Biol Evol (2014) 0.81
Transcriptome sequencing of two wild barley (Hordeum spontaneum L.) ecotypes differentially adapted to drought stress reveals ecotype-specific transcripts. BMC Genomics (2014) 0.80
Similarity in recombination rate estimates highly correlates with genetic differentiation in humans. PLoS One (2011) 0.80
LDsplit: screening for cis-regulatory motifs stimulating meiotic recombination hotspots by analysis of DNA sequence polymorphisms. BMC Bioinformatics (2014) 0.80
Strong artificial selection in domestic mammals did not result in an increased recombination rate. Mol Biol Evol (2014) 0.80
Extreme recombination frequencies shape genome variation and evolution in the honeybee, Apis mellifera. PLoS Genet (2015) 0.79
Recombination Rate Heterogeneity within Arabidopsis Disease Resistance Genes. PLoS Genet (2016) 0.79
Molecular Evolution of PvMSP3α Block II in Plasmodium vivax from Diverse Geographic Origins. PLoS One (2015) 0.78
The population genomics of rhesus macaques (Macaca mulatta) based on whole-genome sequences. Genome Res (2016) 0.77
Recent and historical recombination in the admixed Norwegian Red cattle breed. BMC Genomics (2011) 0.77
Epigenetic functions enriched in transcription factors binding to mouse recombination hotspots. Proteome Sci (2012) 0.77
Genetic diversity and population structure of Lactobacillus delbrueckii subspecies bulgaricus isolated from naturally fermented dairy foods. Sci Rep (2016) 0.77
ARG-walker: inference of individual specific strengths of meiotic recombination hotspots by population genomics analysis. BMC Genomics (2015) 0.77
Contrasting Genomic Diversity in Two Closely Related Postharvest Pathogens: Penicillium digitatum and Penicillium expansum. Genome Biol Evol (2015) 0.76
Comparative Genomics of an Emerging Amphibian Virus. G3 (Bethesda) (2015) 0.76
Multilocus sequence analysis reveals high genetic diversity in clinical isolates of Burkholderia cepacia complex from India. Sci Rep (2016) 0.75
Functional Impact and Evolution of a Novel Human Polymorphic Inversion That Disrupts a Gene and Creates a Fusion Transcript. PLoS Genet (2015) 0.75
Two-Locus Likelihoods Under Variable Population Size and Fine-Scale Recombination Rate Estimation. Genetics (2016) 0.75
Genetic diversity and natural selection footprints of the glycine amidinotransferase gene in various human populations. Sci Rep (2016) 0.75
Finding trans-regulatory genes and protein complexes modulating meiotic recombination hotspots of human, mouse and yeast. BMC Syst Biol (2014) 0.75
New Software for the Fast Estimation of Population Recombination Rates (FastEPRR) in the Genomic Era. G3 (Bethesda) (2016) 0.75
Molecular Population Genetics. Genetics (2017) 0.75
On the Recombination Rate Estimation in the Presence of Population Substructure. PLoS One (2015) 0.75
Background selection as null hypothesis in population genomics: insights and challenges from Drosophila studies. Philos Trans R Soc Lond B Biol Sci (2017) 0.75
The impact of recombination on human mutation load and disease. Philos Trans R Soc Lond B Biol Sci (2017) 0.75
Population genetic structure and adaptation of malaria parasites on the edge of endemic distribution. Mol Ecol (2017) 0.75
On the number of segregating sites in genetical models without recombination. Theor Popul Biol (1975) 60.96
A high-resolution recombination map of the human genome. Nat Genet (2002) 28.66
A fine-scale map of recombination rates and hotspots across the human genome. Science (2005) 26.82
Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data. Genetics (2003) 17.73
The fine-scale structure of recombination rate variation in the human genome. Science (2004) 17.05
Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex. Nat Genet (2001) 15.53
Two-locus sampling distributions and their application. Genetics (2001) 7.42
A coalescent-based method for detecting and estimating recombination from gene sequences. Genetics (2002) 7.41
Estimating recombination rates from population genetic data. Genetics (2001) 5.95
A comparison of estimators of the population recombination rate. Mol Biol Evol (2000) 4.84
The influence of recombination on human genetic diversity. PLoS Genet (2006) 4.04
Where the crossovers are: recombination distributions in mammals. Nat Rev Genet (2004) 3.82
Human recombination hot spots hidden in regions of strong marker association. Nat Genet (2005) 3.33
The distribution and causes of meiotic recombination in the human genome. Biochem Soc Trans (2006) 2.73
SequenceLDhot: detecting recombination hotspots. Bioinformatics (2006) 2.04
Meiotic recombination hot spots and human DNA diversity. Philos Trans R Soc Lond B Biol Sci (2004) 1.57
Hot and cold spots of recombination in the human genome: the reason we should find them and how this can be achieved. Am J Hum Genet (2003) 1.42
A comparison of three estimators of the population-scaled recombination rate: accuracy and robustness. Genetics (2005) 1.27
Strong correlation between meiotic crossovers and haplotype structure in a 2.5-Mb region on the long arm of chromosome 21. Genome Res (2005) 1.20
Consistency of estimators of the population-scaled recombination rate. Theor Popul Biol (2003) 1.19
A new method for detecting human recombination hotspots and its applications to the HapMap ENCODE data. Am J Hum Genet (2006) 1.04
A new multipoint method for genome-wide association studies by imputation of genotypes. Nat Genet (2007) 52.68
Integrating common and rare genetic variation in diverse human populations. Nature (2010) 32.30
A fine-scale map of recombination rates and hotspots across the human genome. Science (2005) 26.82
A high-resolution HLA and SNP haplotype map for disease association studies in the extended human MHC. Nat Genet (2006) 15.63
Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis. Nature (2011) 13.23
Mapping copy number variation by population-scale genome sequencing. Nature (2011) 12.55
Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls. Nature (2010) 12.27
A common sequence motif associated with recombination hot spots and genome instability in humans. Nat Genet (2008) 8.64
Drive against hotspot motifs in primates implicates the PRDM9 gene in meiotic recombination. Science (2009) 7.35
De novo assembly and genotyping of variants using colored de Bruijn graphs. Nat Genet (2012) 5.61
Differential confounding of rare and common variants in spatially structured populations. Nat Genet (2012) 5.28
A statistical method for predicting classical HLA alleles from SNP data. Am J Hum Genet (2008) 4.65
Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis. Nat Genet (2013) 4.62
The influence of recombination on human genetic diversity. PLoS Genet (2006) 4.04
Human genome sequence variation and the influence of gene history, mutation and recombination. Nat Genet (2002) 3.24
A fine-scale chimpanzee genetic map from population sequencing. Science (2012) 2.83
HLA*IMP--an integrated framework for imputing classical HLA alleles from SNP genotypes. Bioinformatics (2011) 2.21
The origin, evolution, and functional impact of short insertion-deletion variants identified in 179 human genomes. Genome Res (2013) 1.83
Recombination and population structure in Salmonella enterica. PLoS Genet (2011) 1.61
Mutations in AP2S1 cause familial hypocalciuric hypercalcemia type 3. Nat Genet (2012) 1.53
A structured ancestral population for the evolution of modern humans. Curr Opin Genet Dev (2004) 1.48
Multi-population classical HLA type imputation. PLoS Comput Biol (2013) 1.43
Estimating selection coefficients in spatially structured populations from time series data of allele frequencies. Genetics (2013) 1.29
Arabidopsis meiotic crossover hot spots overlap with H2A.Z nucleosomes at gene promoters. Nat Genet (2013) 1.29
Whole-exome sequencing studies of nonhereditary (sporadic) parathyroid adenomas. J Clin Endocrinol Metab (2012) 1.12
Screening for recently selected alleles by analysis of human haplotype similarity. Am J Hum Genet (2005) 1.10
Psoriasis patients are enriched for genetic variants that protect against HIV-1 disease. PLoS Genet (2012) 1.10
High-throughput microbial population genomics using the Cortex variation assembler. Bioinformatics (2012) 1.04
PRDM9 marks the spot. Nat Genet (2010) 0.98
Genomewide association studies and common disease--realizing clinical utility. N Engl J Med (2012) 0.95
Hypervariable antigen genes in malaria have ancient roots. BMC Evol Biol (2013) 0.90
Estimating recombination rates from genetic variation in humans. Methods Mol Biol (2012) 0.81
Experiments with the site frequency spectrum. Bull Math Biol (2010) 0.81
Integrating genealogical and dynamical modelling to infer escape and reversion rates in HIV epitopes. Proc Biol Sci (2013) 0.80
Reply to: "FaST-LMM-Select for addressing confounding from spatial structure and rare variants". Nat Genet (2013) 0.80
The comings and goings of a Y polymorphism. Nat Genet (2003) 0.77
Corrigendum: Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis. Nat Commun (2016) 0.75