Published in Anal Bioanal Chem on August 01, 2007
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The functional network of the Arabidopsis plastoglobule proteome based on quantitative proteomics and genome-wide coexpression analysis. Plant Physiol (2012) 1.23
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Quantitative ESI-TOF analysis of macromolecular assembly kinetics. Anal Chem (2008) 1.02
Soil metaproteomics - Comparative evaluation of protein extraction protocols. Soil Biol Biochem (2012) 1.02
Improved identification of wheat gluten proteins through alkylation of cysteine residues and peptide-based mass spectrometry. Sci Rep (2013) 1.01
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PeptideDepot: flexible relational database for visual analysis of quantitative proteomic data and integration of existing protein information. Proteomics (2009) 0.99
Measuring the dynamics of E. coli ribosome biogenesis using pulse-labeling and quantitative mass spectrometry. Mol Biosyst (2012) 0.99
Analysis of a membrane-enriched proteome from postmortem human brain tissue in Alzheimer's disease. Proteomics Clin Appl (2012) 0.98
Mitochondrial proteomics on human fibroblasts for identification of metabolic imbalance and cellular stress. Proteome Sci (2009) 0.98
Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature (2002) 45.19
Proteome survey reveals modularity of the yeast cell machinery. Nature (2006) 20.77
Tankyrase inhibition stabilizes axin and antagonizes Wnt signalling. Nature (2009) 9.15
Computational prediction of proteotypic peptides for quantitative proteomics. Nat Biotechnol (2006) 7.56
A physical and functional map of the human TNF-alpha/NF-kappa B signal transduction pathway. Nat Cell Biol (2004) 7.23
Quantitative chemical proteomics reveals mechanisms of action of clinical ABL kinase inhibitors. Nat Biotechnol (2007) 6.56
Chemoproteomics profiling of HDAC inhibitors reveals selective targeting of HDAC complexes. Nat Biotechnol (2011) 4.83
90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors. Mol Cell (2002) 4.78
Scoring proteomes with proteotypic peptide probes. Nat Rev Mol Cell Biol (2005) 4.63
Phospho.ELM: a database of experimentally verified phosphorylation sites in eukaryotic proteins. BMC Bioinformatics (2004) 4.44
Human Proteinpedia enables sharing of human protein data. Nat Biotechnol (2008) 4.21
ERCC1/XPF removes the 3' overhang from uncapped telomeres and represses formation of telomeric DNA-containing double minute chromosomes. Mol Cell (2003) 3.01
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Robust and sensitive iTRAQ quantification on an LTQ Orbitrap mass spectrometer. Mol Cell Proteomics (2008) 2.51
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A proteome-wide approach identifies sumoylated substrate proteins in yeast. J Biol Chem (2004) 2.31
Class III phosphatidylinositol 4-kinase alpha and beta are novel host factor regulators of hepatitis C virus replication. J Virol (2009) 2.26
RNF146 is a poly(ADP-ribose)-directed E3 ligase that regulates axin degradation and Wnt signalling. Nat Cell Biol (2011) 2.25
Requirement of ATM-dependent monoubiquitylation of histone H2B for timely repair of DNA double-strand breaks. Mol Cell (2011) 2.16
Enterococcus faecalis metalloprotease compromises epithelial barrier and contributes to intestinal inflammation. Gastroenterology (2011) 1.96
A large synthetic peptide and phosphopeptide reference library for mass spectrometry-based proteomics. Nat Biotechnol (2013) 1.93
Confident phosphorylation site localization using the Mascot Delta Score. Mol Cell Proteomics (2010) 1.90
Bartonella adhesin a mediates a proangiogenic host cell response. J Exp Med (2004) 1.84
A public-private partnership to unlock the untargeted kinome. Nat Chem Biol (2013) 1.83
Profiling core proteomes of human cell lines by one-dimensional PAGE and liquid chromatography-tandem mass spectrometry. Mol Cell Proteomics (2003) 1.82
Global proteome analysis of the NCI-60 cell line panel. Cell Rep (2013) 1.77
Discovery of O-GlcNAc-6-phosphate modified proteins in large-scale phosphoproteomics data. Mol Cell Proteomics (2012) 1.71
Bone overgrowth-associated mutations in the LRP4 gene impair sclerostin facilitator function. J Biol Chem (2011) 1.63
A transmembrane tight junction protein selectively expressed on endothelial cells and platelets. J Biol Chem (2002) 1.45
Targeted data acquisition for improved reproducibility and robustness of proteomic mass spectrometry assays. J Am Soc Mass Spectrom (2010) 1.41
Tyrosine phosphorylation mapping of the epidermal growth factor receptor signaling pathway. J Biol Chem (2001) 1.37
Transgenic mouse proteomics identifies new 14-3-3-associated proteins involved in cytoskeletal rearrangements and cell signaling. Mol Cell Proteomics (2006) 1.32
Natural products reveal cancer cell dependence on oxysterol-binding proteins. Nat Chem Biol (2011) 1.31
High-resolution enabled TMT 8-plexing. Anal Chem (2012) 1.29
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Integrated functional genomics approach for the design of patient-individual antitumor vaccines. Cancer Res (2002) 1.28
Affinity purification-mass spectrometry. Powerful tools for the characterization of protein complexes. Eur J Biochem (2003) 1.19
Multiple cyclophilins involved in different cellular pathways mediate HCV replication. Virology (2009) 1.17
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Phosphotyrosine mediated protein interactions of the discoidin domain receptor 1. J Proteomics (2011) 1.11
Systematic identification of the HSP90 candidate regulated proteome. Mol Cell Proteomics (2012) 1.11
Measuring and managing ratio compression for accurate iTRAQ/TMT quantification. J Proteome Res (2013) 1.10
DMSO enhances electrospray response, boosting sensitivity of proteomic experiments. Nat Methods (2013) 1.09
Expression of the proteasome activator PA28 rescues the presentation of a cytotoxic T lymphocyte epitope on melanoma cells. Cancer Res (2002) 1.06
Mass spectrometry-based proteomics in preclinical drug discovery. Chem Biol (2012) 1.04
Delayed fragmentation and optimized isolation width settings for improvement of protein identification and accuracy of isobaric mass tag quantification on Orbitrap-type mass spectrometers. Anal Chem (2011) 1.03
Femtomol sensitivity post-digest (18)O labeling for relative quantification of differential protein complex composition. Rapid Commun Mass Spectrom (2004) 1.03
Proteome wide purification and identification of O-GlcNAc-modified proteins using click chemistry and mass spectrometry. J Proteome Res (2013) 1.02
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SCFFbxo9 and CK2 direct the cellular response to growth factor withdrawal via Tel2/Tti1 degradation and promote survival in multiple myeloma. Nat Cell Biol (2013) 0.98
Discovery of O-GlcNAc-modified proteins in published large-scale proteome data. Mol Cell Proteomics (2012) 0.97
Comprehensive identification of proteins from MALDI imaging. Mol Cell Proteomics (2013) 0.95
Carbonyl-reactive tandem mass tags for the proteome-wide quantification of N-linked glycans. Anal Chem (2012) 0.95
Quantitative chemical proteomics reveals new potential drug targets in head and neck cancer. Mol Cell Proteomics (2011) 0.95
Arf1p provides an unexpected link between COPI vesicles and mRNA in Saccharomyces cerevisiae. Mol Biol Cell (2004) 0.94
Clinical response to chemotherapy in oesophageal adenocarcinoma patients is linked to defects in mitochondria. J Pathol (2013) 0.92
Oxidative stress modulates theophylline effects on steroid responsiveness. Biochem Biophys Res Commun (2008) 0.91
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A simple and effective cleavable linker for chemical proteomics applications. Mol Cell Proteomics (2012) 0.87
Comparing immobilized kinase inhibitors and covalent ATP probes for proteomic profiling of kinase expression and drug selectivity. J Proteome Res (2013) 0.86
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Ultra-high intra-spectrum mass accuracy enables unambiguous identification of fragment reporter ions in isobaric multiplexed quantitative proteomics. Proteomics (2012) 0.77
New affinity probe targeting VEGF receptors for kinase inhibitor selectivity profiling by chemical proteomics. J Proteome Res (2014) 0.77
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Comprehensive proteome analysis in Cenococcum geophilum Fr. as a tool to discover drought-related proteins. J Proteomics (2012) 0.76
ML3 is a NEDD8- and ubiquitin-modified protein. Plant Physiol (2013) 0.76
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Phosphoproteome Profiling Reveals Molecular Mechanisms of Growth-Factor-Mediated Kinase Inhibitor Resistance in EGFR-Overexpressing Cancer Cells. J Proteome Res (2016) 0.75
Affinity purification of proteins binding to kinase inhibitors immobilized on self-assembling monolayers. Methods Mol Biol (2012) 0.75
Phosphoramidates as novel activity-based probes for serine proteases. Chembiochem (2014) 0.75
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