Published in Eur J Biochem on February 01, 2003
Proteomics: a pragmatic perspective. Nat Biotechnol (2010) 2.81
A PP2A phosphatase high density interaction network identifies a novel striatin-interacting phosphatase and kinase complex linked to the cerebral cavernous malformation 3 (CCM3) protein. Mol Cell Proteomics (2008) 2.56
Systems biology in immunology: a computational modeling perspective. Annu Rev Immunol (2011) 2.15
Modifying the DPClus algorithm for identifying protein complexes based on new topological structures. BMC Bioinformatics (2008) 1.81
Protein-protein interactions more conserved within species than across species. PLoS Comput Biol (2006) 1.61
Advances in protein complex analysis using mass spectrometry. J Physiol (2004) 1.51
A microtubule interactome: complexes with roles in cell cycle and mitosis. PLoS Biol (2008) 1.50
Efficient identification of tubby-binding proteins by an improved system of T7 phage display. J Mol Recognit (2009) 1.23
Computational and informatics strategies for identification of specific protein interaction partners in affinity purification mass spectrometry experiments. Proteomics (2012) 1.21
Protein interactions, post-translational modifications and topologies in human cells. Mol Cell Proteomics (2013) 1.20
Proteomics: challenges, techniques and possibilities to overcome biological sample complexity. Hum Genomics Proteomics (2009) 1.07
Probing the protein interaction network of Pseudomonas aeruginosa cells by chemical cross-linking mass spectrometry. Structure (2015) 1.03
Novel multiprotein complexes identified in the hyperthermophilic archaeon Pyrococcus furiosus by non-denaturing fractionation of the native proteome. Mol Cell Proteomics (2008) 0.98
Parallel genetic and proteomic screens identify Msps as a CLASP-Abl pathway interactor in Drosophila. Genetics (2010) 0.94
Cross-linking of a DOPA-containing peptide ligand into its G protein-coupled receptor. Biochemistry (2009) 0.86
A dual platform for selective analyte enrichment and ionization in mass spectrometry using aptamer-conjugated graphene oxide. J Am Chem Soc (2010) 0.85
Modular broad-host-range expression vectors for single-protein and protein complex purification. Appl Environ Microbiol (2004) 0.84
Co-expression among constituents of a motif in the protein-protein interaction network. J Bioinform Comput Biol (2009) 0.84
Identification of residue-to-residue contact between a peptide ligand and its G protein-coupled receptor using periodate-mediated dihydroxyphenylalanine cross-linking and mass spectrometry. J Biol Chem (2010) 0.84
Combining genomic and proteomic approaches for epigenetics research. Epigenomics (2013) 0.83
A proteomics view of the molecular mechanisms and biomarkers of glaucomatous neurodegeneration. Prog Retin Eye Res (2013) 0.83
A density-based clustering approach for identifying overlapping protein complexes with functional preferences. BMC Bioinformatics (2015) 0.81
Inferring protein-protein interaction complexes from immunoprecipitation data. BMC Res Notes (2013) 0.79
The biochemical and mass spectrometric profiling of the dystrophin complexome from skeletal muscle. Comput Struct Biotechnol J (2015) 0.78
The role of targeted chemical proteomics in pharmacology. Br J Pharmacol (2012) 0.76
Proteomics-Based Analysis of Protein Complexes in Pluripotent Stem Cells and Cancer Biology. Int J Mol Sci (2016) 0.75
A three-way approach for protein function classification. PLoS One (2017) 0.75
Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature (2002) 45.19
Proteome survey reveals modularity of the yeast cell machinery. Nature (2006) 20.77
Computational prediction of proteotypic peptides for quantitative proteomics. Nat Biotechnol (2006) 7.56
A physical and functional map of the human TNF-alpha/NF-kappa B signal transduction pathway. Nat Cell Biol (2004) 7.23
Quantitative mass spectrometry in proteomics: a critical review. Anal Bioanal Chem (2007) 6.80
Quantitative chemical proteomics reveals mechanisms of action of clinical ABL kinase inhibitors. Nat Biotechnol (2007) 6.56
90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors. Mol Cell (2002) 4.78
Phospho.ELM: a database of experimentally verified phosphorylation sites in eukaryotic proteins. BMC Bioinformatics (2004) 4.44
Human Proteinpedia enables sharing of human protein data. Nat Biotechnol (2008) 4.21
ERCC1/XPF removes the 3' overhang from uncapped telomeres and represses formation of telomeric DNA-containing double minute chromosomes. Mol Cell (2003) 3.01
Proteomics: a pragmatic perspective. Nat Biotechnol (2010) 2.81
Robust and sensitive iTRAQ quantification on an LTQ Orbitrap mass spectrometer. Mol Cell Proteomics (2008) 2.51
Quantitative mass spectrometry in proteomics: critical review update from 2007 to the present. Anal Bioanal Chem (2012) 2.42
A proteome-wide approach identifies sumoylated substrate proteins in yeast. J Biol Chem (2004) 2.31
Requirement of ATM-dependent monoubiquitylation of histone H2B for timely repair of DNA double-strand breaks. Mol Cell (2011) 2.16
Enterococcus faecalis metalloprotease compromises epithelial barrier and contributes to intestinal inflammation. Gastroenterology (2011) 1.96
A large synthetic peptide and phosphopeptide reference library for mass spectrometry-based proteomics. Nat Biotechnol (2013) 1.93
Confident phosphorylation site localization using the Mascot Delta Score. Mol Cell Proteomics (2010) 1.90
A public-private partnership to unlock the untargeted kinome. Nat Chem Biol (2013) 1.83
Profiling core proteomes of human cell lines by one-dimensional PAGE and liquid chromatography-tandem mass spectrometry. Mol Cell Proteomics (2003) 1.82
Global proteome analysis of the NCI-60 cell line panel. Cell Rep (2013) 1.77
Discovery of O-GlcNAc-6-phosphate modified proteins in large-scale phosphoproteomics data. Mol Cell Proteomics (2012) 1.71
A transmembrane tight junction protein selectively expressed on endothelial cells and platelets. J Biol Chem (2002) 1.45
Tyrosine phosphorylation mapping of the epidermal growth factor receptor signaling pathway. J Biol Chem (2001) 1.37
Transgenic mouse proteomics identifies new 14-3-3-associated proteins involved in cytoskeletal rearrangements and cell signaling. Mol Cell Proteomics (2006) 1.32
Lactocepin secreted by Lactobacillus exerts anti-inflammatory effects by selectively degrading proinflammatory chemokines. Cell Host Microbe (2012) 1.28
Phosphotyrosine mediated protein interactions of the discoidin domain receptor 1. J Proteomics (2011) 1.11
Systematic identification of the HSP90 candidate regulated proteome. Mol Cell Proteomics (2012) 1.11
Measuring and managing ratio compression for accurate iTRAQ/TMT quantification. J Proteome Res (2013) 1.10
DMSO enhances electrospray response, boosting sensitivity of proteomic experiments. Nat Methods (2013) 1.09
Mass spectrometry-based proteomics in preclinical drug discovery. Chem Biol (2012) 1.04
Femtomol sensitivity post-digest (18)O labeling for relative quantification of differential protein complex composition. Rapid Commun Mass Spectrom (2004) 1.03
Proteome wide purification and identification of O-GlcNAc-modified proteins using click chemistry and mass spectrometry. J Proteome Res (2013) 1.02
A multivariate approach to the integration of multi-omics datasets. BMC Bioinformatics (2014) 1.01
SCFFbxo9 and CK2 direct the cellular response to growth factor withdrawal via Tel2/Tti1 degradation and promote survival in multiple myeloma. Nat Cell Biol (2013) 0.98
Discovery of O-GlcNAc-modified proteins in published large-scale proteome data. Mol Cell Proteomics (2012) 0.97
Carbonyl-reactive tandem mass tags for the proteome-wide quantification of N-linked glycans. Anal Chem (2012) 0.95
Quantitative chemical proteomics reveals new potential drug targets in head and neck cancer. Mol Cell Proteomics (2011) 0.95
Comprehensive identification of proteins from MALDI imaging. Mol Cell Proteomics (2013) 0.95
Clinical response to chemotherapy in oesophageal adenocarcinoma patients is linked to defects in mitochondria. J Pathol (2013) 0.92
De novo discovery of phenotypic intratumour heterogeneity using imaging mass spectrometry. J Pathol (2014) 0.91
Oxidative stress modulates theophylline effects on steroid responsiveness. Biochem Biophys Res Commun (2008) 0.91
A novel two-stage tandem mass spectrometry approach and scoring scheme for the identification of O-GlcNAc modified peptides. J Am Soc Mass Spectrom (2011) 0.88
A simple and effective cleavable linker for chemical proteomics applications. Mol Cell Proteomics (2012) 0.87
Comparing immobilized kinase inhibitors and covalent ATP probes for proteomic profiling of kinase expression and drug selectivity. J Proteome Res (2013) 0.86
Co-immunoprecipitation-based identification of putative BAX INHIBITOR-1-interacting proteins involved in cell death regulation and plant-powdery mildew interactions. Mol Plant Pathol (2013) 0.85
Characterization of a high field Orbitrap mass spectrometer for proteome analysis. Proteomics (2013) 0.84
An improved two-step calibration method for matrix-assisted laser desorption/ionization time-of-flight mass spectra for proteomics. Rapid Commun Mass Spectrom (2002) 0.83
Phosphorylation site localization in peptides by MALDI MS/MS and the Mascot Delta Score. Anal Bioanal Chem (2011) 0.83
Quantitative mass spectrometry in proteomics. Anal Bioanal Chem (2012) 0.81
Optimized chemical proteomics assay for kinase inhibitor profiling. J Proteome Res (2015) 0.81
Software tools for MS-based quantitative proteomics: a brief overview. Methods Mol Biol (2012) 0.81
Quantitative proteome profiling of human myoma and myometrium tissue reveals kinase expression signatures with potential for therapeutic intervention. Proteomics (2014) 0.79
Characterization of a chemical affinity probe targeting Akt kinases. J Proteome Res (2013) 0.77
Ultra-high intra-spectrum mass accuracy enables unambiguous identification of fragment reporter ions in isobaric multiplexed quantitative proteomics. Proteomics (2012) 0.77
Dimension reduction techniques for the integrative analysis of multi-omics data. Brief Bioinform (2016) 0.77
New affinity probe targeting VEGF receptors for kinase inhibitor selectivity profiling by chemical proteomics. J Proteome Res (2014) 0.77
MScDB: a mass spectrometry-centric protein sequence database for proteomics. J Proteome Res (2013) 0.77
ML3 is a NEDD8- and ubiquitin-modified protein. Plant Physiol (2013) 0.76
Comprehensive proteome analysis in Cenococcum geophilum Fr. as a tool to discover drought-related proteins. J Proteomics (2012) 0.76
Affinity purification of proteins binding to kinase inhibitors immobilized on self-assembling monolayers. Methods Mol Biol (2012) 0.75
PAS-cal: A repetitive peptide sequence calibration standard for MALDI mass spectrometry. Proteomics (2014) 0.75
Phosphoproteome Profiling Reveals Molecular Mechanisms of Growth-Factor-Mediated Kinase Inhibitor Resistance in EGFR-Overexpressing Cancer Cells. J Proteome Res (2016) 0.75
Investigating RET RTK signaling pathways using an IAP-based activity-profiling approach. J Proteome Res (2014) 0.75
Phosphoramidates as novel activity-based probes for serine proteases. Chembiochem (2014) 0.75