PubRank

Kerstin Lindblad-Toh

Author PubWeight™ 479.33‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Initial sequencing and comparative analysis of the mouse genome. Nature 2002 96.15
2 Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 2007 75.09
3 Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol 2011 53.86
4 Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals. Nature 2005 31.60
5 Genomic maps and comparative analysis of histone modifications in human and mouse. Cell 2005 18.96
6 Evolution of genes and genomes on the Drosophila phylogeny. Nature 2007 18.01
7 Whole-genome sequence assembly for mammalian genomes: Arachne 2. Genome Res 2003 12.30
8 Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature 2004 11.03
9 Distinguishing protein-coding and noncoding genes in the human genome. Proc Natl Acad Sci U S A 2007 8.00
10 Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences. Nature 2007 7.91
11 Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome. Genome Res 2007 7.05
12 Identification and classification of conserved RNA secondary structures in the human genome. PLoS Comput Biol 2006 6.73
13 The mosaic structure of variation in the laboratory mouse genome. Nature 2002 6.54
14 28-way vertebrate alignment and conservation track in the UCSC Genome Browser. Genome Res 2007 6.42
15 Efficient mapping of mendelian traits in dogs through genome-wide association. Nat Genet 2007 5.99
16 Whole-genome resequencing reveals loci under selection during chicken domestication. Nature 2010 5.48
17 Lineage-specific biology revealed by a finished genome assembly of the mouse. PLoS Biol 2009 5.45
18 The genomic basis of adaptive evolution in threespine sticklebacks. Nature 2012 5.20
19 Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites. Proc Natl Acad Sci U S A 2007 4.91
20 Initial sequence and comparative analysis of the cat genome. Genome Res 2007 4.67
21 An initial strategy for the systematic identification of functional elements in the human genome by low-redundancy comparative sequencing. Proc Natl Acad Sci U S A 2005 4.38
22 Sequencing the nuclear genome of the extinct woolly mammoth. Nature 2008 4.31
23 The genomic signature of dog domestication reveals adaptation to a starch-rich diet. Nature 2013 3.61
24 The genome of the green anole lizard and a comparative analysis with birds and mammals. Nature 2011 3.32
25 The African coelacanth genome provides insights into tetrapod evolution. Nature 2013 2.78
26 Genome-wide synteny through highly sensitive sequence alignment: Satsuma. Bioinformatics 2010 2.56
27 Duplication of FGF3, FGF4, FGF19 and ORAOV1 causes hair ridge and predisposition to dermoid sinus in Ridgeback dogs. Nat Genet 2007 2.33
28 Identification of genomic regions associated with phenotypic variation between dog breeds using selection mapping. PLoS Genet 2011 2.24
29 A cis-acting regulatory mutation causes premature hair graying and susceptibility to melanoma in the horse. Nat Genet 2008 2.13
30 Leader of the pack: gene mapping in dogs and other model organisms. Nat Rev Genet 2008 2.12
31 Three periods of regulatory innovation during vertebrate evolution. Science 2011 2.09
32 The dog as a cancer model. Nat Biotechnol 2006 2.08
33 A mutation in hairless dogs implicates FOXI3 in ectodermal development. Science 2008 2.06
34 Rethinking dog domestication by integrating genetics, archeology, and biogeography. Proc Natl Acad Sci U S A 2012 1.78
35 Genome-wide association analysis reveals a SOD1 mutation in canine degenerative myelopathy that resembles amyotrophic lateral sclerosis. Proc Natl Acad Sci U S A 2009 1.72
36 Genome-wide analysis in German shepherd dogs reveals association of a locus on CFA 27 with atopic dermatitis. PLoS Genet 2013 1.69
37 Mutation discovery in mice by whole exome sequencing. Genome Biol 2011 1.69
38 A missense mutation in the SERPINH1 gene in Dachshunds with osteogenesis imperfecta. PLoS Genet 2009 1.68
39 A high density SNP array for the domestic horse and extant Perissodactyla: utility for association mapping, genetic diversity, and phylogeny studies. PLoS Genet 2012 1.66
40 Death of PRDM9 coincides with stabilization of the recombination landscape in the dog genome. Genome Res 2011 1.62
41 ZBED6, a novel transcription factor derived from a domesticated DNA transposon regulates IGF2 expression and muscle growth. PLoS Biol 2009 1.61
42 Mutations causing medullary cystic kidney disease type 1 lie in a large VNTR in MUC1 missed by massively parallel sequencing. Nat Genet 2013 1.52
43 Genome-wide association mapping identifies multiple loci for a canine SLE-related disease complex. Nat Genet 2010 1.49
44 A novel unstable duplication upstream of HAS2 predisposes to a breed-defining skin phenotype and a periodic fever syndrome in Chinese Shar-Pei dogs. PLoS Genet 2011 1.45
45 Genome-wide association identifies a deletion in the 3' untranslated region of striatin in a canine model of arrhythmogenic right ventricular cardiomyopathy. Hum Genet 2010 1.43
46 A deletion in nephronophthisis 4 (NPHP4) is associated with recessive cone-rod dystrophy in standard wire-haired dachshund. Genome Res 2008 1.42
47 The dog and rat olfactory receptor repertoires. Genome Biol 2005 1.37
48 Origins of shared genetic variation in African cichlids. Mol Biol Evol 2012 1.35
49 Distinct B-cell and T-cell lymphoproliferative disease prevalence among dog breeds indicates heritable risk. Cancer Res 2005 1.33
50 Facilitating genome navigation: survey sequencing and dense radiation-hybrid gene mapping. Nat Rev Genet 2005 1.33
51 Localization of canine brachycephaly using an across breed mapping approach. PLoS One 2010 1.33
52 Assisted assembly: how to improve a de novo genome assembly by using related species. Genome Biol 2009 1.28
53 Performance of microarray and liquid based capture methods for target enrichment for massively parallel sequencing and SNP discovery. PLoS One 2011 1.21
54 Molecular subtypes of osteosarcoma identified by reducing tumor heterogeneity through an interspecies comparative approach. Bone 2011 1.21
55 A truncating mutation in ATP13A2 is responsible for adult-onset neuronal ceroid lipofuscinosis in Tibetan terriers. Neurobiol Dis 2011 1.19
56 Construction of a 2-Mb resolution BAC microarray for CGH analysis of canine tumors. Genome Res 2005 1.16
57 Comparative genomics as a tool to understand evolution and disease. Genome Res 2013 1.16
58 Mammary tumor development in dogs is associated with BRCA1 and BRCA2. Cancer Res 2009 1.15
59 LUPA: a European initiative taking advantage of the canine genome architecture for unravelling complex disorders in both human and dogs. Vet J 2011 1.15
60 LGI2 truncation causes a remitting focal epilepsy in dogs. PLoS Genet 2011 1.14
61 A unique T cell receptor discovered in marsupials. Proc Natl Acad Sci U S A 2007 1.14
62 Identification of the bovine Arachnomelia mutation by massively parallel sequencing implicates sulfite oxidase (SUOX) in bone development. PLoS Genet 2010 1.13
63 Genome-wide analyses implicate 33 loci in heritable dog osteosarcoma, including regulatory variants near CDKN2A/B. Genome Biol 2013 1.12
64 Refining tumor-associated aneuploidy through 'genomic recoding' of recurrent DNA copy number aberrations in 150 canine non-Hodgkin lymphomas. Leuk Lymphoma 2011 1.09
65 Patterns of molecular genetic variation among cat breeds. Genomics 2007 1.07
66 Novel origins of copy number variation in the dog genome. Genome Biol 2012 1.06
67 Candidate genes and functional noncoding variants identified in a canine model of obsessive-compulsive disorder. Genome Biol 2014 1.04
68 Assessing DNA sequence variations in human ESTs in a phylogenetic context using high-density oligonucleotide arrays. Genomics 2002 1.03
69 A frameshift mutation in golden retriever dogs with progressive retinal atrophy endorses SLC4A3 as a candidate gene for human retinal degenerations. PLoS One 2011 1.03
70 Fine-mapping and mutation analysis of TRPM1: a candidate gene for leopard complex (LP) spotting and congenital stationary night blindness in horses. Brief Funct Genomics 2010 1.00
71 A deletion in the N-myc downstream regulated gene 1 (NDRG1) gene in Greyhounds with polyneuropathy. PLoS One 2010 0.98
72 Genome sequencing: three's company. Nature 2004 0.98
73 Genome reannotation of the lizard Anolis carolinensis based on 14 adult and embryonic deep transcriptomes. BMC Genomics 2013 0.97
74 Comparative physical maps derived from BAC end sequences of tilapia (Oreochromis niloticus). BMC Genomics 2010 0.97
75 A cytogenetically characterized, genome-anchored 10-Mb BAC set and CGH array for the domestic dog. J Hered 2007 0.97
76 High resolution mapping and positional cloning of ENU-induced mutations in the Rw region of mouse chromosome 5. BMC Genet 2010 0.95
77 ZBED6: The birth of a new transcription factor in the common ancestor of placental mammals. Transcription 2010 0.94
78 Two loci on chromosome 5 are associated with serum IgE levels in Labrador retrievers. PLoS One 2012 0.92
79 Heart development in fibronectin-null mice is governed by a genetic modifier on chromosome four. Mech Dev 2007 0.90
80 Identification of repetitive elements in the genome of Oreochromis niloticus: tilapia repeat masker. Mar Biotechnol (NY) 2009 0.89
81 Copy number expansion of the STX17 duplication in melanoma tissue from Grey horses. BMC Genomics 2012 0.87
82 Comparison of buccal and blood-derived canine DNA, either native or whole genome amplified, for array-based genome-wide association studies. BMC Res Notes 2011 0.87
83 A splice site mutation in a gene encoding for PDK4, a mitochondrial protein, is associated with the development of dilated cardiomyopathy in the Doberman pinscher. Hum Genet 2012 0.86
84 Amylase activity is associated with AMY2B copy numbers in dog: implications for dog domestication, diet and diabetes. Anim Genet 2014 0.85
85 Genome-wide copy number variant discovery in dogs using the CanineHD genotyping array. BMC Genomics 2014 0.84
86 DLA class II alleles are associated with risk for canine symmetrical lupoid onychodystrophy [corrected](SLO). PLoS One 2010 0.83
87 Analysis of a set of Australian northern brown bandicoot expressed sequence tags with comparison to the genome sequence of the South American grey short tailed opossum. BMC Genomics 2007 0.83
88 Thorough investigation of a canine autoinflammatory disease (AID) confirms one main risk locus and suggests a modifier locus for amyloidosis. PLoS One 2013 0.83
89 Unsupervised genome-wide recognition of local relationship patterns. BMC Genomics 2013 0.83
90 Exploiting nucleotide composition to engineer promoters. PLoS One 2011 0.82
91 Genomic profiling reveals extensive heterogeneity in somatic DNA copy number aberrations of canine hemangiosarcoma. Chromosome Res 2014 0.82
92 Corrigendum: The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Nat Genet 2016 0.78
93 IgA deficiency in wolves. Dev Comp Immunol 2013 0.76
94 Correction: Genome-Wide Analysis in German Shepherd Dogs Reveals Association of a Locus on CFA 27 with Atopic Dermatitis. PLoS Genet 2015 0.75
95 Correction: Genome-Wide Analyses Suggest Mechanisms Involving Early B-Cell Development in Canine IgA Deficiency. PLoS One 2015 0.75
96 The ESR1 gene is associated with risk for canine mammary tumours. BMC Vet Res 2013 0.75
97 Microarray-based cytogenetic profiling reveals recurrent and subtype-associated genomic copy number aberrations in feline sarcomas. Chromosome Res 2009 0.75
98 Inheritance, mode of inheritance, and candidate genes for primary hyperparathyroidism in Keeshonden. J Vet Intern Med 2007 0.75
99 Repeat expansion detection (RED) and the RED cloning strategy. Methods Mol Biol 2003 0.75