Published in PLoS Genet on January 12, 2012
Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse. Nature (2013) 3.45
Worldwide patterns of ancestry, divergence, and admixture in domesticated cattle. PLoS Genet (2014) 1.72
Four loci explain 83% of size variation in the horse. PLoS One (2012) 1.40
Prehistoric genomes reveal the genetic foundation and cost of horse domestication. Proc Natl Acad Sci U S A (2014) 1.40
Development and validation of a high density SNP genotyping array for Atlantic salmon (Salmo salar). BMC Genomics (2014) 1.32
Genome-wide analysis reveals selection for important traits in domestic horse breeds. PLoS Genet (2013) 1.26
Genetic diversity in the modern horse illustrated from genome-wide SNP data. PLoS One (2013) 1.18
Evolutionary Genomics and Conservation of the Endangered Przewalski's Horse. Curr Biol (2015) 1.14
Mitochondrial phylogenomics of modern and ancient equids. PLoS One (2013) 1.12
Development of the catfish 250K SNP array for genome-wide association studies. BMC Res Notes (2014) 1.10
Genomic signatures reveal new evidences for selection of important traits in domestic cattle. Mol Biol Evol (2014) 1.07
Speciation with gene flow in equids despite extensive chromosomal plasticity. Proc Natl Acad Sci U S A (2014) 1.06
Vitis phylogenomics: hybridization intensities from a SNP array outperform genotype calls. PLoS One (2013) 1.01
Extent of linkage disequilibrium in the domestic cat, Felis silvestris catus, and its breeds. PLoS One (2013) 1.01
Mutation discovery for Mendelian traits in non-laboratory animals: a review of achievements up to 2012. Anim Genet (2013) 1.00
Identification of copy number variants in horses. Genome Res (2012) 0.97
Development and evaluation of the first high-throughput SNP array for common carp (Cyprinus carpio). BMC Genomics (2014) 0.97
The utility of low-density genotyping for imputation in the Thoroughbred horse. Genet Sel Evol (2014) 0.90
Construction of a high-density, high-resolution genetic map and its integration with BAC-based physical map in channel catfish. DNA Res (2014) 0.88
Identification of genetic variation on the horse y chromosome and the tracing of male founder lineages in modern breeds. PLoS One (2013) 0.88
Phylogenomic evidence for ancient hybridization in the genomes of living cats (Felidae). Genome Res (2015) 0.88
The Evolutionary Origin and Genetic Makeup of Domestic Horses. Genetics (2016) 0.87
Copy number variation in the horse genome. PLoS Genet (2014) 0.86
Two recessive mutations in FGF5 are associated with the long-hair phenotype in donkeys. Genet Sel Evol (2014) 0.86
Characterizing neutral genomic diversity and selection signatures in indigenous populations of Moroccan goats (Capra hircus) using WGS data. Front Genet (2015) 0.81
Applied equine genetics. Equine Vet J (2014) 0.80
Genome-wide SNP validation and mantle tissue transcriptome analysis in the silver-lipped pearl oyster, Pinctada maxima. Mar Biotechnol (NY) (2013) 0.80
Risk of false positive genetic associations in complex traits with underlying population structure: a case study. Vet J (2014) 0.79
A chromosomal region on ECA13 is associated with maxillary prognathism in horses. PLoS One (2014) 0.79
Genome-wide association study implicates testis-sperm specific FKBP6 as a susceptibility locus for impaired acrosome reaction in stallions. PLoS Genet (2012) 0.79
Natural killer cell receptor genes in the family Equidae: not only Ly49. PLoS One (2013) 0.78
The American Quarter Horse: population structure and relationship to the thoroughbred. J Hered (2013) 0.78
Local and global patterns of admixture and population structure in Iranian native cattle. BMC Genet (2016) 0.77
Genetic Susceptibility to Rhodococcus equi. J Vet Intern Med (2015) 0.77
Detection of two equine trisomies using SNP-CGH. Mamm Genome (2013) 0.76
A genome wide study of genetic adaptation to high altitude in feral Andean Horses of the páramo. BMC Evol Biol (2013) 0.76
Discovery of Gene Sources for Economic Traits in Hanwoo by Whole-genome Resequencing. Asian-Australas J Anim Sci (2016) 0.75
Identification and validation of risk loci for osteochondrosis in standardbreds. BMC Genomics (2016) 0.75
Population Variation Reveals Independent Selection toward Small Body Size in Chinese Debao Pony. Genome Biol Evol (2015) 0.75
Genome wide linkage disequilibrium and genetic structure in Sicilian dairy sheep breeds. BMC Genet (2014) 0.75
Genetic structure and gene flows within horses: a genealogical study at the french population scale. PLoS One (2013) 0.75
Genomic analysis identified a potential novel molecular mechanism for high-altitude adaptation in sheep at the Himalayas. Sci Rep (2016) 0.75
Heritability of Recurrent Exertional Rhabdomyolysis in Standardbred and Thoroughbred Racehorses Derived From SNP Genotyping Data. J Hered (2016) 0.75
Impact of Parental Bos taurus and Bos indicus Origins on Copy Number Variation in Traditional Chinese Cattle Breeds. Genome Biol Evol (2015) 0.75
TRPM2 SNP genotype previously associated with susceptibility to Rhodococcus equi pneumonia in Quarter Horse foals displays differential gene expression identified using RNA-Seq. BMC Genomics (2016) 0.75
De Novo Assembly of the Donkey White Blood Cell Transcriptome and a Comparative Analysis of Phenotype-Associated Genes between Donkeys and Horses. PLoS One (2015) 0.75
Construction and evaluation of a high-density SNP array for the Pacific oyster (Crassostrea gigas). PLoS One (2017) 0.75
Genomic structure of the horse major histocompatibility complex class II region resolved using PacBio long-read sequencing technology. Sci Rep (2017) 0.75
Developing a 670k genotyping array to tag ~2M SNPs across 24 horse breeds. BMC Genomics (2017) 0.75
Identification of key contributors in complex population structures. PLoS One (2017) 0.75
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Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature (2005) 23.04
Linkage disequilibrium in the human genome. Nature (2001) 17.24
Linkage disequilibrium in humans: models and data. Am J Hum Genet (2001) 14.97
Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds. Science (2009) 7.64
Development and characterization of a high density SNP genotyping assay for cattle. PLoS One (2009) 7.06
Efficient mapping of mendelian traits in dogs through genome-wide association. Nat Genet (2007) 5.99
BeadArray technology: enabling an accurate, cost-effective approach to high-throughput genotyping. Biotechniques (2002) 5.98
Design of a high density SNP genotyping assay in the pig using SNPs identified and characterized by next generation sequencing technology. PLoS One (2009) 5.26
Genome sequence, comparative analysis, and population genetics of the domestic horse. Science (2009) 4.41
A genome wide survey of SNP variation reveals the genetic structure of sheep breeds. PLoS One (2009) 2.22
A cis-acting regulatory mutation causes premature hair graying and susceptibility to melanoma in the horse. Nat Genet (2008) 2.13
Coat color variation at the beginning of horse domestication. Science (2009) 1.97
A missense mutation in the gene for melanocyte-stimulating hormone receptor (MC1R) is associated with the chestnut coat color in horses. Mamm Genome (1996) 1.87
Mutations in the agouti (ASIP), the extension (MC1R), and the brown (TYRP1) loci and their association to coat color phenotypes in horses (Equus caballus). Mamm Genome (2001) 1.73
A missense mutation in PMEL17 is associated with the Silver coat color in the horse. BMC Genet (2006) 1.58
Endothelin receptor B polymorphism associated with lethal white foal syndrome in horses. Mamm Genome (1998) 1.45
A mutation in the MATP gene causes the cream coat colour in the horse. Genet Sel Evol (2003) 1.39
Microsatellite diversity, pedigree relatedness and the contributions of founder lineages to thoroughbred horses. Anim Genet (2001) 1.31
A missense mutation in the endothelin-B receptor gene is associated with Lethal White Foal Syndrome: an equine version of Hirschsprung disease. Mamm Genome (1998) 1.29
Whole-genome SNP association in the horse: identification of a deletion in myosin Va responsible for Lavender Foal Syndrome. PLoS Genet (2010) 1.27
A genome-wide SNP-association study confirms a sequence variant (g.66493737C>T) in the equine myostatin (MSTN) gene as the most powerful predictor of optimum racing distance for Thoroughbred racehorses. BMC Genomics (2010) 1.27
Mitochondrial DNA evolution in the genus Equus. Mol Biol Evol (1986) 1.04
Microsatellite variation in Japanese and Asian horses and their phylogenetic relationship using a European horse outgroup. J Hered (2003) 1.04
Phylogenetic relationships within the genus Equus and the evolution of alpha and theta globin genes. J Mol Evol (1998) 1.04
Identification of the myostatin locus (MSTN) as having a major effect on optimum racing distance in the Thoroughbred horse in the USA. Anim Genet (2010) 1.03
Phylogenetics of Perissodactyla and tests of the molecular clock. J Mol Evol (2000) 0.99
Genetic variation in Przewalski's horses, with special focus on the last wild caught mare, 231 Orlitza III. Cytogenet Genome Res (2003) 0.96
Missense mutation in exon 2 of SLC36A1 responsible for champagne dilution in horses. PLoS Genet (2008) 0.95
Exon skipping in the KIT gene causes a Sabino spotting pattern in horses. Mamm Genome (2005) 0.94
Genome-wide association analysis of osteochondrosis of the tibiotarsal joint in Norwegian Standardbred trotters. Anim Genet (2010) 0.92
Genetic relationship between Mongolian and Norwegian horses? Anim Genet (2003) 0.88
Genetics of swayback in American Saddlebred horses. Anim Genet (2010) 0.86
A PCR-RFLP for KIT associated with tobiano spotting pattern in horses. Anim Genet (2002) 0.81
Initial sequencing and comparative analysis of the mouse genome. Nature (2002) 96.15
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature (2007) 75.09
Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol (2011) 53.86
Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals. Nature (2005) 31.60
Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature (2005) 23.04
Genomic maps and comparative analysis of histone modifications in human and mouse. Cell (2005) 18.96
Evolution of genes and genomes on the Drosophila phylogeny. Nature (2007) 18.01
The sequence and de novo assembly of the giant panda genome. Nature (2009) 15.76
Efficient control of population structure in model organism association mapping. Genetics (2008) 12.32
Whole-genome sequence assembly for mammalian genomes: Arachne 2. Genome Res (2003) 12.30
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature (2004) 11.03
Impacts of the Cretaceous Terrestrial Revolution and KPg extinction on mammal diversification. Science (2011) 8.23
Distinguishing protein-coding and noncoding genes in the human genome. Proc Natl Acad Sci U S A (2007) 8.00
Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences. Nature (2007) 7.91
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome. Genome Res (2007) 7.05
The DNA sequence of the human X chromosome. Nature (2005) 6.97
A sequence-based variation map of 8.27 million SNPs in inbred mouse strains. Nature (2007) 6.77
Identification and classification of conserved RNA secondary structures in the human genome. PLoS Comput Biol (2006) 6.73
The mosaic structure of variation in the laboratory mouse genome. Nature (2002) 6.54
28-way vertebrate alignment and conservation track in the UCSC Genome Browser. Genome Res (2007) 6.42
Efficient mapping of mendelian traits in dogs through genome-wide association. Nat Genet (2007) 5.99
Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis. Nature (2006) 5.52
Whole-genome resequencing reveals loci under selection during chicken domestication. Nature (2010) 5.48
Lineage-specific biology revealed by a finished genome assembly of the mouse. PLoS Biol (2009) 5.45
The genomic basis of adaptive evolution in threespine sticklebacks. Nature (2012) 5.20
Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites. Proc Natl Acad Sci U S A (2007) 4.91
Initial sequence and comparative analysis of the cat genome. Genome Res (2007) 4.67
An initial strategy for the systematic identification of functional elements in the human genome by low-redundancy comparative sequencing. Proc Natl Acad Sci U S A (2005) 4.38
Sequencing the nuclear genome of the extinct woolly mammoth. Nature (2008) 4.31
Insights into hominid evolution from the gorilla genome sequence. Nature (2012) 4.12
Comparative and demographic analysis of orang-utan genomes. Nature (2011) 3.83
African pastoralism: genetic imprints of origins and migrations. Science (2002) 3.66
The genomic signature of dog domestication reveals adaptation to a starch-rich diet. Nature (2013) 3.61
Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse. Nature (2013) 3.45
The genome of the green anole lizard and a comparative analysis with birds and mammals. Nature (2011) 3.32
Great ape genetic diversity and population history. Nature (2013) 2.95
The African coelacanth genome provides insights into tetrapod evolution. Nature (2013) 2.78
Genome-wide synteny through highly sensitive sequence alignment: Satsuma. Bioinformatics (2010) 2.56
A genome scan for positive selection in thoroughbred horses. PLoS One (2009) 2.42
Duplication of FGF3, FGF4, FGF19 and ORAOV1 causes hair ridge and predisposition to dermoid sinus in Ridgeback dogs. Nat Genet (2007) 2.33
Identification of genomic regions associated with phenotypic variation between dog breeds using selection mapping. PLoS Genet (2011) 2.24
A cis-acting regulatory mutation causes premature hair graying and susceptibility to melanoma in the horse. Nat Genet (2008) 2.13
Leader of the pack: gene mapping in dogs and other model organisms. Nat Rev Genet (2008) 2.12
Three periods of regulatory innovation during vertebrate evolution. Science (2011) 2.09
The dog as a cancer model. Nat Biotechnol (2006) 2.08
Comparative biology of mammalian telomeres: hypotheses on ancestral states and the roles of telomeres in longevity determination. Aging Cell (2011) 2.07
A mutation in hairless dogs implicates FOXI3 in ectodermal development. Science (2008) 2.06
Segmental phylogenetic relationships of inbred mouse strains revealed by fine-scale analysis of sequence variation across 4.6 mb of mouse genome. Genome Res (2004) 1.93
Comparative analysis of gene-expression patterns in human and African great ape cultured fibroblasts. Genome Res (2003) 1.92
Rethinking dog domestication by integrating genetics, archeology, and biogeography. Proc Natl Acad Sci U S A (2012) 1.78
Mutations in DMRT3 affect locomotion in horses and spinal circuit function in mice. Nature (2012) 1.72
Genome-wide association analysis reveals a SOD1 mutation in canine degenerative myelopathy that resembles amyotrophic lateral sclerosis. Proc Natl Acad Sci U S A (2009) 1.72
Fine mapping in 94 inbred mouse strains using a high-density haplotype resource. Genetics (2010) 1.71
Genome-wide analysis in German shepherd dogs reveals association of a locus on CFA 27 with atopic dermatitis. PLoS Genet (2013) 1.69
Mutation discovery in mice by whole exome sequencing. Genome Biol (2011) 1.69
A missense mutation in the SERPINH1 gene in Dachshunds with osteogenesis imperfecta. PLoS Genet (2009) 1.68
MTM1 mutation associated with X-linked myotubular myopathy in Labrador Retrievers. Proc Natl Acad Sci U S A (2010) 1.64
The value of avian genomics to the conservation of wildlife. BMC Genomics (2009) 1.63
Death of PRDM9 coincides with stabilization of the recombination landscape in the dog genome. Genome Res (2011) 1.62
ZBED6, a novel transcription factor derived from a domesticated DNA transposon regulates IGF2 expression and muscle growth. PLoS Biol (2009) 1.61
A massively parallel sequencing approach uncovers ancient origins and high genetic variability of endangered Przewalski's horses. Genome Biol Evol (2011) 1.60
A missense mutation in PMEL17 is associated with the Silver coat color in the horse. BMC Genet (2006) 1.58
Cytotoxic T-lymphocyte associated antigen 4 gene polymorphisms and autoimmune thyroid disease: a meta-analysis. J Clin Endocrinol Metab (2007) 1.57
Mitochondrial genomes from modern horses reveal the major haplogroups that underwent domestication. Proc Natl Acad Sci U S A (2012) 1.55
Molecular decay of the tooth gene Enamelin (ENAM) mirrors the loss of enamel in the fossil record of placental mammals. PLoS Genet (2009) 1.52
Macroevolutionary dynamics and historical biogeography of primate diversification inferred from a species supermatrix. PLoS One (2012) 1.52
Mutations causing medullary cystic kidney disease type 1 lie in a large VNTR in MUC1 missed by massively parallel sequencing. Nat Genet (2013) 1.52
Accelerated maturation of primate testis by xenografting into mice. Biol Reprod (2004) 1.51
Genome-wide association mapping identifies multiple loci for a canine SLE-related disease complex. Nat Genet (2010) 1.49
Alu insertion loci and platyrrhine primate phylogeny. Mol Phylogenet Evol (2005) 1.49
Validation of a urine test and characterization of the putative genetic mutation for hyperuricosuria in Bulldogs and Black Russian Terriers. Am J Vet Res (2010) 1.48
A novel unstable duplication upstream of HAS2 predisposes to a breed-defining skin phenotype and a periodic fever syndrome in Chinese Shar-Pei dogs. PLoS Genet (2011) 1.45
Candidate genes for physical performance in the horse. Vet J (2010) 1.44
Analysis of sequence variability of the bovine prion protein gene (PRNP) in German cattle breeds. Neurogenetics (2004) 1.43
Genome-wide association identifies a deletion in the 3' untranslated region of striatin in a canine model of arrhythmogenic right ventricular cardiomyopathy. Hum Genet (2010) 1.43
A deletion in nephronophthisis 4 (NPHP4) is associated with recessive cone-rod dystrophy in standard wire-haired dachshund. Genome Res (2008) 1.42
Bovine prion protein gene (PRNP) promoter polymorphisms modulate PRNP expression and may be responsible for differences in bovine spongiform encephalopathy susceptibility. J Biol Chem (2005) 1.40
A mutation in the MATP gene causes the cream coat colour in the horse. Genet Sel Evol (2003) 1.39
A genome-wide association study reveals loci influencing height and other conformation traits in horses. PLoS One (2012) 1.39
Tissue sampling methods and standards for vertebrate genomics. Gigascience (2012) 1.39
The dog and rat olfactory receptor repertoires. Genome Biol (2005) 1.37
Refugial origins of reindeer (Rangifer tarandus L.) inferred from mitochondrial DNA sequences. Evolution (2003) 1.36
Origins of shared genetic variation in African cichlids. Mol Biol Evol (2012) 1.35
Evolutionary movement of centromeres in horse, donkey, and zebra. Genomics (2006) 1.34
Distinct B-cell and T-cell lymphoproliferative disease prevalence among dog breeds indicates heritable risk. Cancer Res (2005) 1.33
Copy number variation analysis in the great apes reveals species-specific patterns of structural variation. Genome Res (2011) 1.33
Facilitating genome navigation: survey sequencing and dense radiation-hybrid gene mapping. Nat Rev Genet (2005) 1.33
Localization of canine brachycephaly using an across breed mapping approach. PLoS One (2010) 1.33