Published in Nucleic Acids Res on October 04, 2007
Do all modifications benefit all tRNAs? FEBS Lett (2010) 1.46
Editing and methylation at a single site by functionally interdependent activities. Nature (2017) 1.38
Protein synthesis. Rqc2p and 60S ribosomal subunits mediate mRNA-independent elongation of nascent chains. Science (2015) 1.21
Inosine modifications in human tRNAs are incorporated at the precursor tRNA level. Nucleic Acids Res (2015) 0.91
Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem (1987) 281.19
Compilation of tRNA sequences and sequences of tRNA genes. Nucleic Acids Res (2005) 5.28
Direct analysis of aminoacylation levels of tRNAs in vivo. Application to studying recognition of Escherichia coli initiator tRNA mutants by glutaminyl-tRNA synthetase. J Biol Chem (1991) 5.02
A double-stranded RNA unwinding activity introduces structural alterations by means of adenosine to inosine conversions in mammalian cells and Xenopus eggs. Proc Natl Acad Sci U S A (1989) 3.23
Decoding the genome: a modified view. Nucleic Acids Res (2004) 2.90
An adenosine deaminase that generates inosine at the wobble position of tRNAs. Science (1999) 2.32
MODOMICS: a database of RNA modification pathways. Nucleic Acids Res (2006) 1.95
Spatial and temporal control of RNA stability. Proc Natl Acad Sci U S A (2001) 1.78
Modulation of RNA editing by functional nucleolar sequestration of ADAR2. Proc Natl Acad Sci U S A (2003) 1.73
Editing of a tRNA anticodon in marsupial mitochondria changes its codon recognition. Nucleic Acids Res (1993) 1.70
Stabilization of the anticodon stem-loop of tRNALys,3 by an A+-C base-pair and by pseudouridine. J Mol Biol (1999) 1.70
Structure of a purine-purine wobble base pair in the decoding center of the ribosome. Nat Struct Mol Biol (2004) 1.66
C to U editing and modifications during the maturation of the mitochondrial tRNA(Asp) in marsupials. Nucleic Acids Res (1995) 1.65
Endonucleolytic processing of CCA-less tRNA precursors by RNase Z in Bacillus subtilis. EMBO J (2003) 1.62
The final cut. The importance of tRNA 3'-processing. EMBO Rep (2001) 1.59
Mechanism for expanding the decoding capacity of transfer RNAs by modification of uridines. Nat Struct Mol Biol (2007) 1.58
CRM1 mediates the export of ADAR1 through a nuclear export signal within the Z-DNA binding domain. Mol Cell Biol (2001) 1.56
C to U editing of the anticodon of imported mitochondrial tRNA(Trp) allows decoding of the UGA stop codon in Leishmania tarentolae. EMBO J (1999) 1.55
Mechanisms of RNA localization and translational regulation. Curr Opin Genet Dev (2000) 1.54
Enzymatic conversion of adenosine to inosine and to N1-methylinosine in transfer RNAs: a review. Biochimie (1996) 1.51
Hypermodified nucleosides in the anticodon of tRNALys stabilize a canonical U-turn structure. Biochemistry (2000) 1.51
A primordial RNA modification enzyme: the case of tRNA (m1A) methyltransferase. Nucleic Acids Res (2004) 1.44
tadA, an essential tRNA-specific adenosine deaminase from Escherichia coli. EMBO J (2002) 1.38
Cloning and characterization of tRNA (m1A58) methyltransferase (TrmI) from Thermus thermophilus HB27, a protein required for cell growth at extreme temperatures. Nucleic Acids Res (2003) 1.35
RNA editing changes the identity of a mitochondrial tRNA in marsupials. EMBO J (1996) 1.28
Multiple protein domains determine the cell type-specific nuclear distribution of the catalytic subunit required for apolipoprotein B mRNA editing. Proc Natl Acad Sci U S A (1997) 1.28
RNA localization mechanisms in oocytes. J Cell Sci (2005) 1.27
5' end maturation and RNA editing have to precede tRNA 3' processing in plant mitochondria. Proc Natl Acad Sci U S A (1998) 1.21
In vitro characterization of a tRNA editing activity in the mitochondria of Spizellomyces punctatus, a Chytridiomycete fungus. J Biol Chem (2004) 1.18
An adenosine-to-inosine tRNA-editing enzyme that can perform C-to-U deamination of DNA. Proc Natl Acad Sci U S A (2007) 1.10
Induction of cytidine to uridine editing on cytoplasmic apolipoprotein B mRNA by overexpressing APOBEC-1. J Biol Chem (2000) 1.08
A novel nuclear localization signal in the auxiliary domain of apobec-1 complementation factor regulates nucleocytoplasmic import and shuttling. J Biol Chem (2003) 1.07
End processing precedes mitochondrial importation and editing of tRNAs in Leishmania tarentolae. J Biol Chem (2000) 1.04
C to U editing stimulates A to I editing in the anticodon loop of a cytoplasmic threonyl tRNA in Trypanosoma brucei. J Biol Chem (2005) 1.03
Repair of tRNAs in metazoan mitochondria. Nucleic Acids Res (2000) 1.00
3'-processing of yeast tRNATrp precedes 5'-processing. RNA (2003) 0.96
Temperature-dependent biosynthesis of 2-thioribothymidine of Thermus thermophilus tRNA. J Biol Chem (2005) 0.96
Purification of nuclei from a flagellate protozoan, Trypanosoma brucei. Anal Biochem (1982) 0.95
APOBEC-1 and AID are nucleo-cytoplasmic trafficking proteins but APOBEC3G cannot traffic. Biochem Biophys Res Commun (2006) 0.94
Microtubules, motors, and mRNA localization mechanisms: watching fluorescent messages move. Cell (2001) 0.90
Intracellular trafficking determinants in APOBEC-1, the catalytic subunit for cytidine to uridine editing of apolipoprotein B mRNA. Exp Cell Res (2001) 0.90
Role of editing in plant mitochondrial transfer RNAs. Gene (2002) 0.89
Metabolic regulation of apoB mRNA editing is associated with phosphorylation of APOBEC-1 complementation factor. Nucleic Acids Res (2006) 0.89
An RNA complex of the HIV-1 A-loop and tRNA(Lys,3) is stabilized by nucleoside modifications. J Am Chem Soc (2002) 0.85
A mammalian microRNA expression atlas based on small RNA library sequencing. Cell (2007) 34.03
MicroRNA-155 is a negative regulator of activation-induced cytidine deaminase. Immunity (2008) 4.59
AID mediates hypermutation by deaminating single stranded DNA. J Exp Med (2003) 3.24
Regulation of AID expression in the immune response. J Exp Med (2007) 2.35
A role for activation-induced cytidine deaminase in the host response against a transforming retrovirus. Immunity (2006) 2.27
Molecular markers in patients with chronic wounds to guide surgical debridement. Mol Med (2007) 2.06
Transcriptome-wide sequencing reveals numerous APOBEC1 mRNA-editing targets in transcript 3' UTRs. Nat Struct Mol Biol (2011) 2.04
Immunoglobulin somatic hypermutation. Annu Rev Genet (2007) 1.87
A coming-of-age story: activation-induced cytidine deaminase turns 10. Nat Immunol (2009) 1.68
Do all modifications benefit all tRNAs? FEBS Lett (2010) 1.46
A yeast-endonuclease-generated DNA break induces antigenic switching in Trypanosoma brucei. Nature (2009) 1.44
Novel genomic effects of glucocorticoids in epidermal keratinocytes: inhibition of apoptosis, interferon-gamma pathway, and wound healing along with promotion of terminal differentiation. J Biol Chem (2006) 1.43
Saccharomyces cerevisiae imports the cytosolic pathway for Gln-tRNA synthesis into the mitochondrion. Genes Dev (2005) 1.40
MicroRNAs of the immune system: roles in inflammation and cancer. Ann N Y Acad Sci (2010) 1.37
Transfer RNA modifications: nature's combinatorial chemistry playground. Wiley Interdiscip Rev RNA (2012) 1.37
Cortisol synthesis in epidermis is induced by IL-1 and tissue injury. J Biol Chem (2011) 1.36
Mammalian mitochondria have the innate ability to import tRNAs by a mechanism distinct from protein import. Proc Natl Acad Sci U S A (2008) 1.32
Switch recombination and somatic hypermutation are controlled by the heavy chain 3' enhancer region. J Exp Med (2009) 1.29
Cytidine deaminases: AIDing DNA demethylation? Genes Dev (2010) 1.28
A role for autophagic protein beclin 1 early in lymphocyte development. J Immunol (2011) 1.18
The transcription elongation complex directs activation-induced cytidine deaminase-mediated DNA deamination. Mol Cell Biol (2006) 1.15
V(D)J recombination and the evolution of the adaptive immune system. PLoS Biol (2003) 1.14
An adenosine-to-inosine tRNA-editing enzyme that can perform C-to-U deamination of DNA. Proc Natl Acad Sci U S A (2007) 1.10
Beyond SHM and CSR: AID and related cytidine deaminases in the host response to viral infection. Adv Immunol (2007) 1.09
Deregulation of keratinocyte differentiation and activation: a hallmark of venous ulcers. J Cell Mol Med (2008) 1.08
Viral induction of AID is independent of the interferon and the Toll-like receptor signaling pathways but requires NF-kappaB. J Exp Med (2007) 1.06
CRE recombinase-based positive-negative selection systems for genetic manipulation in Trypanosoma brucei. Mol Biochem Parasitol (2007) 1.05
C to U editing stimulates A to I editing in the anticodon loop of a cytoplasmic threonyl tRNA in Trypanosoma brucei. J Biol Chem (2005) 1.03
Shhh! Silencing by microRNA-155. Philos Trans R Soc Lond B Biol Sci (2009) 1.02
MicroRNA control of lymphocyte differentiation and function. Curr Opin Immunol (2011) 0.99
Telomere length affects the frequency and mechanism of antigenic variation in Trypanosoma brucei. PLoS Pathog (2012) 0.98
Structural and mechanistic basis for enhanced translational efficiency by 2-thiouridine at the tRNA anticodon wobble position. J Mol Biol (2013) 0.98
A comprehensive analysis of the effects of the deaminase AID on the transcriptome and methylome of activated B cells. Nat Immunol (2013) 0.97
Thiolation controls cytoplasmic tRNA stability and acts as a negative determinant for tRNA editing in mitochondria. J Biol Chem (2009) 0.97
Mitochondrial tRNA import in Trypanosoma brucei is independent of thiolation and the Rieske protein. RNA (2009) 0.95
Diverse functions for DNA and RNA editing in the immune system. RNA Biol (2010) 0.95
Differential localization of nuclear-encoded tRNAs between the cytosol and mitochondrion in Leishmania tarentolae. RNA (2002) 0.94
The Fe/S cluster assembly protein Isd11 is essential for tRNA thiolation in Trypanosoma brucei. J Biol Chem (2010) 0.94
Small ncRNA transcriptome analysis from kinetoplast mitochondria of Leishmania tarentolae. Nucleic Acids Res (2007) 0.92
Leishmania tarentolae: purification and characterization of tubulin and its suitability for antileishmanial drug screening. Exp Parasitol (2006) 0.91
Farnesyl pyrophosphate inhibits epithelialization and wound healing through the glucocorticoid receptor. J Biol Chem (2009) 0.90
RBP38, a novel RNA-binding protein from trypanosomatid mitochondria, modulates RNA stability. Eukaryot Cell (2003) 0.90
Solubility-based genetic screen identifies RING finger protein 126 as an E3 ligase for activation-induced cytidine deaminase. Proc Natl Acad Sci U S A (2012) 0.90
Keratin dressings speed epithelialization of deep partial-thickness wounds. Wound Repair Regen (2012) 0.89
Pathogenic mechanism of a human mitochondrial tRNAPhe mutation associated with myoclonic epilepsy with ragged red fibers syndrome. Proc Natl Acad Sci U S A (2007) 0.89
Futile import of tRNAs and proteins into the mitochondrion of Trypanosoma brucei evansi. Mol Biochem Parasitol (2010) 0.88
The divergent eukaryote Trichomonas vaginalis has an m7G cap methyltransferase capable of a single N2 methylation. Nucleic Acids Res (2008) 0.88
Intergenic and external transcribed spacers of ribosomal RNA genes in lizard-infecting Leishmania: molecular structure and phylogenetic relationship to mammal-infecting Leishmania in the subgenus Leishmania (Leishmania). Mem Inst Oswaldo Cruz (2002) 0.87
Mesenchymal stem cell therapy and delivery systems in nonhealing wounds. Adv Skin Wound Care (2011) 0.86
Unusual noncanonical intron editing is important for tRNA splicing in Trypanosoma brucei. Mol Cell (2013) 0.86
The T. brucei TRM5 methyltransferase plays an essential role in mitochondrial protein synthesis and function. RNA (2013) 0.84
The role of stem cells in the treatment of diabetic foot ulcers. Diabetes Res Clin Pract (2011) 0.83
Identifying mRNA editing deaminase targets by RNA-Seq. Methods Mol Biol (2011) 0.83
A single zinc ion is sufficient for an active Trypanosoma brucei tRNA editing deaminase. J Biol Chem (2011) 0.83
Determinants of tRNA editing and modification: avoiding conundrums, affecting function. Semin Cell Dev Biol (2011) 0.83
Analysis of tRNA editing in native and synthetic substrates. Methods Mol Biol (2011) 0.82
The regulation of somatic hypermutation. Curr Opin Immunol (2004) 0.80
Increased number of Langerhans cells in the epidermis of diabetic foot ulcers correlates with healing outcome. Immunol Res (2013) 0.79
Rosiglitazone modulates the behaviors of diabetic host-derived fibroblasts in a carboxymethyllysine-modified collagen model. Wound Repair Regen (2012) 0.78
Glucocorticoid receptor localizes to adherens junctions at the plasma membrane of keratinocytes. PLoS One (2013) 0.78
Quality assessment of tissue specimens for studies of diabetic foot ulcers. Exp Dermatol (2013) 0.78
Long noncoding RNAs: implications for antigen receptor diversification. Adv Immunol (2009) 0.78
Using T. brucei as a biological epitope-display platform to elicit specific antibody responses. J Immunol Methods (2010) 0.78
In vitro and in vivo activities of novel cyclic lipopeptides against staphylococcal biofilms. Protein Pept Lett (2014) 0.77
The C-terminal end of the Trypanosoma brucei editing deaminase plays a critical role in tRNA binding. RNA (2011) 0.77
Cloning, characterization and preliminary crystallographic analysis of Leishmania hypoxanthine-guanine phosphoribosyltransferase. Biochim Biophys Acta (2002) 0.77
Effects of Trypanosoma brucei tryptophanyl-tRNA synthetases silencing by RNA interference. Mem Inst Oswaldo Cruz (2007) 0.77
Keratinocytes produce IL-6 in response to desmoglein 1 cleavage by Staphylococcus aureus exfoliative toxin A. Immunol Res (2013) 0.76
Cutting, dicing, healing and sealing: the molecular surgery of tRNA. Wiley Interdiscip Rev RNA (2015) 0.76
Biology and Biomarkers for Wound Healing. Plast Reconstr Surg (2016) 0.76
You break it, you fix it: functions for AID downstream of deamination. Nat Immunol (2013) 0.75
Post-transcriptional RNA modification methods. Methods (2016) 0.75
Low frequency of NRAS and KRAS2 gene mutations in childhood myelodysplastic syndromes. Cancer Genet Cytogenet (2004) 0.75
A multidisciplinary team approach to hydroxyurea-associated chronic wound with squamous cell carcinoma. Int Wound J (2011) 0.75
107 Modifications modulate anticodon loop dynamics and codon recognition in E. coli tRNA(Arg1,2). J Biomol Struct Dyn (2015) 0.75
A modified digestion-circularization PCR (DC-PCR) approach to detect hypermutation-associated DNA double-strand breaks. Ann N Y Acad Sci (2003) 0.75
OXOPAP assay: for selective amplification of aminoacylated tRNAs from total cellular fractions. Methods (2008) 0.75