Published in ISME J on August 09, 2007
Comparative metagenomics of bathypelagic plankton and bottom sediment from the Sea of Marmara. ISME J (2010) 1.49
Phylum Verrucomicrobia representatives share a compartmentalized cell plan with members of bacterial phylum Planctomycetes. BMC Microbiol (2009) 1.46
Toward molecular trait-based ecology through integration of biogeochemical, geographical and metagenomic data. Mol Syst Biol (2011) 1.45
The metagenome of the marine anammox bacterium 'Candidatus Scalindua profunda' illustrates the versatility of this globally important nitrogen cycle bacterium. Environ Microbiol (2012) 1.44
Going deeper: metagenome of a hadopelagic microbial community. PLoS One (2011) 1.23
Influence of nutrients and currents on the genomic composition of microbes across an upwelling mosaic. ISME J (2012) 1.20
Chromatin organization and radio resistance in the bacterium Gemmata obscuriglobus. J Bacteriol (2008) 1.05
Bacterial diversity in relation to secondary production and succession on surfaces of the kelp Laminaria hyperborea. ISME J (2012) 1.04
Temporal variability of coastal Planctomycetes clades at Kabeltonne station, North Sea. Appl Environ Microbiol (2011) 0.99
Planctomycetes dominate biofilms on surfaces of the kelp Laminaria hyperborea. BMC Microbiol (2010) 0.98
Transcriptional response of the model planctomycete Rhodopirellula baltica SH1(T) to changing environmental conditions. BMC Genomics (2009) 0.96
Genome sequencing of a single cell of the widely distributed marine subsurface Dehalococcoidia, phylum Chloroflexi. ISME J (2013) 0.91
Contrasting extracellular enzyme activities of particle-associated bacteria from distinct provinces of the North Atlantic Ocean. Front Microbiol (2012) 0.86
Bringing Planctomycetes into pure culture. Front Microbiol (2012) 0.85
Life cycle analysis of the model organism Rhodopirellula baltica SH 1(T) by transcriptome studies. Microb Biotechnol (2010) 0.84
A Brief Review: The Z-curve Theory and its Application in Genome Analysis. Curr Genomics (2014) 0.83
Proteins of Unknown Biochemical Function: A Persistent Problem and a Roadmap to Help Overcome It. Plant Physiol (2015) 0.82
Comparing and Evaluating Metagenome Assembly Tools from a Microbiologist's Perspective - Not Only Size Matters! PLoS One (2017) 0.82
Determination of the diversity of Rhodopirellula isolates from European seas by multilocus sequence analysis. Appl Environ Microbiol (2009) 0.81
Recognition of Protein-coding Genes Based on Z-curve Algorithms. Curr Genomics (2014) 0.78
Bacterial Diversity in Submarine Groundwater along the Coasts of the Yellow Sea. Front Microbiol (2016) 0.77
Biochemical Characterization of a Family 15 Carbohydrate Esterase from a Bacterial Marine Arctic Metagenome. PLoS One (2016) 0.77
Effects of ecological engineered oxygenation on the bacterial community structure in an anoxic fjord in western Sweden. ISME J (2014) 0.76
Genomic and Transcriptomic Resolution of Organic Matter Utilization Among Deep-Sea Bacteria in Guaymas Basin Hydrothermal Plumes. Front Microbiol (2016) 0.76
Patterns of bacterial diversity in the marine planktonic particulate matter continuum. ISME J (2017) 0.75
Bacterial diversity in the surface sediments of the hypoxic zone near the Changjiang Estuary and in the East China Sea. Microbiologyopen (2016) 0.75
Effects of actinomycete secondary metabolites on sediment microbial communities. Appl Environ Microbiol (2016) 0.75
Distinct Bacterial Communities in Surficial Seafloor Sediments Following the 2010 Deepwater Horizon Blowout. Front Microbiol (2016) 0.75
Planctomycetes in lakes: poor or strong competitors for phosphorus? Appl Environ Microbiol (2013) 0.75
Diverse Bacterial Groups Contribute to the Alkane Degradation Potential of Chronically Polluted Subantarctic Coastal Sediments. Microb Ecol (2015) 0.75
Ubiquity and quantitative significance of bacterioplankton lineages inhabiting the oxygenated hypolimnion of deep freshwater lakes. ISME J (2017) 0.75
The All-Species Living Tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains. Syst Appl Microbiol (2008) 8.21
Microbial community gene expression in ocean surface waters. Proc Natl Acad Sci U S A (2008) 6.50
The microbial engines that drive Earth's biogeochemical cycles. Science (2008) 6.22
Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria. Appl Environ Microbiol (2002) 5.90
Genomic islands and the ecology and evolution of Prochlorococcus. Science (2006) 5.07
Symbiosis insights through metagenomic analysis of a microbial consortium. Nature (2006) 5.04
Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota. Nature (2012) 4.42
Massive nitrogen loss from the Benguela upwelling system through anaerobic ammonium oxidation. Proc Natl Acad Sci U S A (2005) 4.15
Application of tetranucleotide frequencies for the assignment of genomic fragments. Environ Microbiol (2004) 4.12
Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom. Science (2012) 4.11
Whole genome analysis of the marine Bacteroidetes'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter. Environ Microbiol (2006) 3.79
Diversity and structure of bacterial communities in Arctic versus Antarctic pack ice. Appl Environ Microbiol (2003) 3.50
Diversity and distribution of methanotrophic archaea at cold seeps. Appl Environ Microbiol (2005) 3.45
A cryptic sulfur cycle in oxygen-minimum-zone waters off the Chilean coast. Science (2010) 3.29
Revising the nitrogen cycle in the Peruvian oxygen minimum zone. Proc Natl Acad Sci U S A (2009) 3.11
Megx.net--database resources for marine ecological genomics. Nucleic Acids Res (2006) 3.09
Linking crenarchaeal and bacterial nitrification to anammox in the Black Sea. Proc Natl Acad Sci U S A (2007) 2.82
Insights into the genome of large sulfur bacteria revealed by analysis of single filaments. PLoS Biol (2007) 2.69
Release LTPs104 of the All-Species Living Tree. Syst Appl Microbiol (2011) 2.46
Microbial reefs in the Black Sea fueled by anaerobic oxidation of methane. Science (2002) 2.45
Detoxification of sulphidic African shelf waters by blooming chemolithotrophs. Nature (2008) 2.37
Salinibacter ruber gen. nov., sp. nov., a novel, extremely halophilic member of the Bacteria from saltern crystallizer ponds. Int J Syst Evol Microbiol (2002) 2.29
A single-cell view on the ecophysiology of anaerobic phototrophic bacteria. Proc Natl Acad Sci U S A (2008) 2.23
In situ accessibility of small-subunit rRNA of members of the domains Bacteria, Archaea, and Eucarya to Cy3-labeled oligonucleotide probes. Appl Environ Microbiol (2003) 2.15
A conspicuous nickel protein in microbial mats that oxidize methane anaerobically. Nature (2003) 2.10
Widespread known and novel phosphonate utilization pathways in marine bacteria revealed by functional screening and metagenomic analyses. Environ Microbiol (2009) 2.09
An improved protocol for quantification of freshwater Actinobacteria by fluorescence in situ hybridization. Appl Environ Microbiol (2003) 2.09
Novel microbial communities of the Haakon Mosby mud volcano and their role as a methane sink. Nature (2006) 2.06
High rate of uptake of organic nitrogen compounds by Prochlorococcus cyanobacteria as a key to their dominance in oligotrophic oceanic waters. Appl Environ Microbiol (2003) 2.03
Comparison of fluorescently labeled oligonucleotide and polynucleotide probes for the detection of pelagic marine bacteria and archaea. Appl Environ Microbiol (2002) 1.96
Actinobacterial 16S rRNA genes from freshwater habitats cluster in four distinct lineages. Environ Microbiol (2004) 1.94
Comparative sequence analysis and oligonucleotide probe design based on 23S rRNA genes of Alphaproteobacteria from North Sea bacterioplankton. Syst Appl Microbiol (2004) 1.91
Hydrogen is an energy source for hydrothermal vent symbioses. Nature (2011) 1.86
Assessing diversity and biogeography of aerobic anoxygenic phototrophic bacteria in surface waters of the Atlantic and Pacific Oceans using the Global Ocean Sampling expedition metagenomes. Environ Microbiol (2007) 1.80
Latitudinal distribution of prokaryotic picoplankton populations in the Atlantic Ocean. Environ Microbiol (2009) 1.76
Optimization strategies for DNA microarray-based detection of bacteria with 16S rRNA-targeting oligonucleotide probes. Appl Environ Microbiol (2003) 1.70
Novel Proteorhodopsin variants from the Mediterranean and Red Seas. Environ Microbiol (2003) 1.67
Comparative analysis of magnetosome gene clusters in magnetotactic bacteria provides further evidence for horizontal gene transfer. Environ Microbiol (2009) 1.66
Update of the All-Species Living Tree Project based on 16S and 23S rRNA sequence analyses. Syst Appl Microbiol (2010) 1.58
Diversity and abundance of aerobic and anaerobic methane oxidizers at the Haakon Mosby Mud Volcano, Barents Sea. Appl Environ Microbiol (2007) 1.58
Metagenome and mRNA expression analyses of anaerobic methanotrophic archaea of the ANME-1 group. Environ Microbiol (2009) 1.53
Characterization of a marine gammaproteobacterium capable of aerobic anoxygenic photosynthesis. Proc Natl Acad Sci U S A (2007) 1.51
Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse and widespread in marine sediments. ISME J (2012) 1.51
Identification of DNA-synthesizing bacterial cells in coastal North Sea plankton. Appl Environ Microbiol (2002) 1.48
Meeting Report: BioSharing at ISMB 2010. Stand Genomic Sci (2010) 1.47
Flow sorting of marine bacterioplankton after fluorescence in situ hybridization. Appl Environ Microbiol (2004) 1.45
Thermophilic anaerobic oxidation of methane by marine microbial consortia. ISME J (2011) 1.44
Molecular diversity among marine picophytoplankton as revealed by psbA analyses. Environ Microbiol (2003) 1.43
Toward cloning of the magnetotactic metagenome: identification of magnetosome island gene clusters in uncultivated magnetotactic bacteria from different aquatic sediments. Appl Environ Microbiol (2009) 1.42
A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones. Environ Microbiol (2008) 1.42
Automated enumeration of groups of marine picoplankton after fluorescence in situ hybridization. Appl Environ Microbiol (2003) 1.42
Microheterogeneity in 16S ribosomal DNA-defined bacterial populations from a stratified planktonic environment is related to temporal changes and to ecological adaptations. Appl Environ Microbiol (2002) 1.42
Potential interactions of particle-associated anammox bacteria with bacterial and archaeal partners in the Namibian upwelling system. Appl Environ Microbiol (2007) 1.36
An improved fluorescence in situ hybridization protocol for the identification of bacteria and archaea in marine sediments. FEMS Microbiol Ecol (2004) 1.35
Genome and physiology of a model Epsilonproteobacterium responsible for sulfide detoxification in marine oxygen depletion zones. Proc Natl Acad Sci U S A (2011) 1.35
Conservation of proteobacterial magnetosome genes and structures in an uncultivated member of the deep-branching Nitrospira phylum. Proc Natl Acad Sci U S A (2010) 1.34
Simultaneous fluorescence in situ hybridization of mRNA and rRNA in environmental bacteria. Appl Environ Microbiol (2004) 1.33
Are readily culturable bacteria in coastal North Sea waters suppressed by selective grazing mortality? Appl Environ Microbiol (2003) 1.31
A single-cell sequencing approach to the classification of large, vacuolated sulfur bacteria. Syst Appl Microbiol (2011) 1.30
Diversity and vertical distribution of cultured and uncultured Deltaproteobacteria in an intertidal mud flat of the Wadden Sea. Environ Microbiol (2005) 1.29
JCoast - a biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes. BMC Bioinformatics (2008) 1.28
Genomic content of uncultured Bacteroidetes from contrasting oceanic provinces in the North Atlantic Ocean. Environ Microbiol (2011) 1.28
Light-induced transcriptional responses associated with proteorhodopsin-enhanced growth in a marine flavobacterium. ISME J (2011) 1.27
Distinct flavobacterial communities in contrasting water masses of the north Atlantic Ocean. ISME J (2010) 1.24
Identification of the dominant sulfate-reducing bacterial partner of anaerobic methanotrophs of the ANME-2 clade. Environ Microbiol (2010) 1.24
Genomewide association study for onset age in Parkinson disease. BMC Med Genet (2009) 1.24
The genome of the alga-associated marine flavobacterium Formosa agariphila KMM 3901T reveals a broad potential for degradation of algal polysaccharides. Appl Environ Microbiol (2013) 1.22
Molecular and morphological characterization of the association between bacterial endosymbionts and the marine nematode Astomonema sp. from the Bahamas. Environ Microbiol (2007) 1.22
High local and global diversity of Flavobacteria in marine plankton. Environ Microbiol (2007) 1.20
Is the in situ accessibility of the 16S rRNA of Escherichia coli for Cy3-labeled oligonucleotide probes predicted by a three-dimensional structure model of the 30S ribosomal subunit? Appl Environ Microbiol (2003) 1.20
In situ distribution and activity of nitrifying bacteria in freshwater sediment. Environ Microbiol (2003) 1.19
Fate of heterotrophic microbes in pelagic habitats: focus on populations. Microbiol Mol Biol Rev (2005) 1.18
Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains. ISME J (2010) 1.17
Distribution and in situ abundance of sulfate-reducing bacteria in diverse marine hydrocarbon seep sediments. Environ Microbiol (2012) 1.16
Novel groups of Gammaproteobacteria catalyse sulfur oxidation and carbon fixation in a coastal, intertidal sediment. Environ Microbiol (2010) 1.16
The founding charter of the Genomic Observatories Network. Gigascience (2014) 1.16
Histones in crenarchaea. J Bacteriol (2005) 1.15
Metaproteomics of a gutless marine worm and its symbiotic microbial community reveal unusual pathways for carbon and energy use. Proc Natl Acad Sci U S A (2012) 1.14
Phylogeny of 16S rRNA, ribulose 1,5-bisphosphate carboxylase/oxygenase, and adenosine 5'-phosphosulfate reductase genes from gamma- and alphaproteobacterial symbionts in gutless marine worms (oligochaeta) from Bermuda and the Bahamas. Appl Environ Microbiol (2006) 1.14
Complete genome sequence of Marinobacter adhaerens type strain (HP15), a diatom-interacting marine microorganism. Stand Genomic Sci (2010) 1.14
Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide. Environ Microbiol (2009) 1.14
Roseobacter clade bacteria are abundant in coastal sediments and encode a novel combination of sulfur oxidation genes. ISME J (2012) 1.13
Substrate incorporation patterns of bacterioplankton populations in stratified and mixed waters of a humic lake. Environ Microbiol (2009) 1.13
Quantification of dissimilatory (bi)sulphite reductase gene expression in Desulfobacterium autotrophicum using real-time RT-PCR. Environ Microbiol (2003) 1.13
Biogeography and phylogeny of the NOR5/OM60 clade of Gammaproteobacteria. Syst Appl Microbiol (2009) 1.10
Insights into the genomes of archaea mediating the anaerobic oxidation of methane. Environ Microbiol (2005) 1.10
Ecogenomics and genome landscapes of marine Pseudoalteromonas phage H105/1. ISME J (2010) 1.09
Coexistence of bacterial sulfide oxidizers, sulfate reducers, and spirochetes in a gutless worm (Oligochaeta) from the Peru margin. Appl Environ Microbiol (2005) 1.09
Microbial community structure of sandy intertidal sediments in the North Sea, Sylt-Rømø Basin, Wadden Sea. Syst Appl Microbiol (2006) 1.08
Single-cell and population level viral infection dynamics revealed by phageFISH, a method to visualize intracellular and free viruses. Environ Microbiol (2013) 1.08
Unveiling microbial life in the new deep-sea hypersaline Lake Thetis. Part II: a metagenomic study. Environ Microbiol (2011) 1.08
In situ accessibility of Saccharomyces cerevisiae 26S rRNA to Cy3-labeled oligonucleotide probes comprising the D1 and D2 domains. Appl Environ Microbiol (2003) 1.07
Isolation of small-subunit rRNA for stable isotopic characterization. Environ Microbiol (2002) 1.07
Clustered genes related to sulfate respiration in uncultured prokaryotes support the theory of their concomitant horizontal transfer. J Bacteriol (2005) 1.05